Seed development (WP2279)

Arabidopsis thaliana

This Arabidopsis seed development pathway network in GPML format was projected using the reference rice seed development network [[Pathway:WP2199]] and the Arabidopsis to rice gene homology data sets. The green colored nodes (genes) represent where the Inparanoid-based gene homology was positively predicted based on the cutoffs used. The tool used for making the projection was [http://jaiswallab.cgrb.oregonstate.edu/software/PGS Pathway GeneSWAPPER]. Method is described in the publication [http://www.thericejournal.com/content/6/1/14/ Hanumappa et al. (2013)]. This method creates a new projection, but preserves the interactions between nodes.

Authors

Mamatha Hanumappa , Kristina Hanspers , Pankaj Jaiswal , Martina Summer-Kutmon , Eric Weitz , and Lars Willighagen

Activity

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Organisms

Arabidopsis thaliana

Communities

Annotations

Cell Type Ontology

obsolete plant cell

Pathway Ontology

regulatory pathway signaling pathway

Participants

Label Type Compact URI Comment
AT4G19720 GeneProduct tair.locus:AT4G19720 Projected from TAIR, homologous to LOC_Os11g27400 (GlyH).
Chitinase
AT4G19750 GeneProduct tair.locus:AT4G19750 Projected from TAIR, homologous to LOC_Os11g27400 (GlyH).
Chitinase
CYP76C6 GeneProduct tair.locus:AT1G33720 Projected from TAIR, homologous to LOC_Os10g08474 (CYP450 ).
AP2 transcription factor
AT2G14710 GeneProduct tair.locus:AT2G14710 Projected from TAIR, homologous to LOC_Os07g35050 (OsFBX237).
Cdc2-related protein kinase
ATNAS2 GeneProduct tair.locus:AT5G56080 Projected from TAIR, homologous to LOC_Os03g19427 (NAS1).
NA synthase gene 1
AT3G49190 GeneProduct tair.locus:AT3G49190 Projected from TAIR, homologous to LOC_Os05g48260 (RIR 1b).
AT4G19760 GeneProduct tair.locus:AT4G19760 Projected from TAIR, homologous to LOC_Os11g27400 (GlyH).
Chitinase
CYP76C4 GeneProduct tair.locus:AT2G45550 Projected from TAIR, homologous to LOC_Os10g08474 (CYP450 ).
AP2 transcription factor
CYP76C1 GeneProduct tair.locus:AT2G45560 Projected from TAIR, homologous to LOC_Os10g08474 (CYP450 ).
AP2 transcription factor
AT3G16580 GeneProduct tair.locus:AT3G16580 Projected from TAIR, homologous to LOC_Os07g35050 (OsFBX237).
Cdc2-related protein kinase
NAS1 GeneProduct tair.locus:AT5G04950 Projected from TAIR, homologous to LOC_Os03g19427 (NAS1).
NA synthase gene 1
RACK1C_AT GeneProduct tair.locus:AT3G18130 Projected from TAIR, homologous to LOC_Os01g49290 (RACK1A).
Also called GPB-LR/ RWD
AT1G03670 GeneProduct tair.locus:AT1G03670 Projected from TAIR, homologous to LOC_Os09g17329 (Ankyrin-like protein).
Iron transporter
AtHsp90.4 GeneProduct tair.locus:AT5G56000 Projected from TAIR, homologous to LOC_Os09g30418 (HSP90).
Also called HSP81-2
AT4G19800 GeneProduct tair.locus:AT4G19800 Projected from TAIR, homologous to LOC_Os11g27400 (GlyH).
Chitinase
AT3G49210 GeneProduct tair.locus:AT3G49210 Projected from TAIR, homologous to LOC_Os05g48260 (RIR 1b).
BHLH038 GeneProduct tair.locus:AT3G56970 Projected from TAIR, homologous to LOC_Os01g72370 (IRO2).
basic/helix-loop-helix 56
CYCB1;5 GeneProduct tair.locus:AT1G34460 Projected from TAIR, homologous to LOC_Os01g59120 (CycB1;1).
Seed Shattering
PGL34 GeneProduct tair.locus:AT3G58010 Projected from TAIR, homologous to LOC_Os12g13170 (ZIP-1a).
AT4G03460 GeneProduct tair.locus:AT4G03460 Projected from TAIR, homologous to LOC_Os09g17329 (Ankyrin-like protein).
Iron transporter
TEM1 GeneProduct tair.locus:AT1G25560 Projected from TAIR, homologous to LOC_Os01g49830 (RAV1-like).
CSN5B GeneProduct tair.locus:AT1G71230 Projected from TAIR, homologous to LOC_Os04g56070 (CSN5).
MYB65 GeneProduct tair.locus:AT3G11440 Projected from TAIR, homologous to LOC_Os01g59660 (GAMYB).
regulates GA induction of Amy2A
ATHB12 GeneProduct tair.locus:AT3G61890 Projected from TAIR, homologous to LOC_Os04g45810 (HOX 22).
In Cooper et al. 2003 protein sequence provided matches HOX 22, however it was named HOX6 (AF145730)
AT2G18110 GeneProduct tair.locus:AT2G18110 Projected from TAIR, homologous to LOC_Os07g42300 (EF-1-d1).
EF-1B beta 1, EF-1-beta
ARD1 GeneProduct tair.locus:AT4G14716 Projected from TAIR, homologous to LOC_Os10g28350 (SIP2).
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 Ethylene induced
AT1G48860 GeneProduct tair.locus:AT1G48860 Projected from TAIR, homologous to LOC_Os06g04280 ( EPSPS1).
5-Enolpyruvylshikimate-3-phosphate synthase 1
AT5G48250 GeneProduct tair.locus:AT5G48250 Projected from TAIR, homologous to LOC_Os02g49230 (CCT/B-box zinc finger ).
ATIREG1 GeneProduct tair.locus:AT2G38460 Projected from TAIR, homologous to LOC_Os06g36450 (ferroportin1).
HSP81-3 GeneProduct tair.locus:AT5G56010 Projected from TAIR, homologous to LOC_Os09g30418 (HSP90).
Also called HSP81-2
NAC053 GeneProduct tair.locus:AT3G10500 Projected from TAIR, homologous to LOC_Os02g57650 (NAC2).
AT3G49200 GeneProduct tair.locus:AT3G49200 Projected from TAIR, homologous to LOC_Os05g48260 (RIR 1b).
DAD2 GeneProduct tair.locus:AT2G35520 Projected from TAIR, homologous to LOC_Os04g32550 (DAD1).
Defender against cell death 1
AtcwINV4 GeneProduct tair.locus:AT2G36190 Projected from TAIR, homologous to LOC_Os04g33720 (CIN3).
SUS1 GeneProduct tair.locus:AT5G20830 Projected from TAIR, homologous to LOC_Os06g09450 (SUS2).
Sucrose synthase 2
AtcwINV4 GeneProduct tair.locus:AT2G36190 Projected from TAIR, homologous to LOC_Os04g33740 (CIN2).
CML23 GeneProduct tair.locus:AT1G66400 Projected from TAIR, homologous to LOC_Os05g13580 (CML18).
AT1G09640 GeneProduct tair.locus:AT1G09640 Projected from TAIR, homologous to LOC_Os02g12800 (EF-1-g).
eEF-1G
AT3G54030 GeneProduct tair.locus:AT3G54030 Projected from TAIR, homologous to LOC_Os03g61010 (TPR-PK).
Putative protein kinase
CRU2 GeneProduct tair.locus:AT1G03880 Projected from TAIR, homologous to LOC_Os10g26060 (GluA-2).
AT1G62660 GeneProduct tair.locus:AT1G62660 Projected from TAIR, homologous to LOC_Os02g01590 (Vin 2).
CRU2 GeneProduct tair.locus:AT1G03880 Projected from TAIR, homologous to LOC_Os02g15090 (GluC).
CRU2 GeneProduct tair.locus:AT1G03880 Projected from TAIR, homologous to LOC_Os02g15169 (GluB-1A).
UniProt ID: P14323
APUM11 GeneProduct tair.locus:AT4G08840 Projected from TAIR, homologous to LOC_Os12g31000 (Pumilio ).
Leucine rich repeat
EIL1 GeneProduct tair.locus:AT2G27050 Projected from TAIR, homologous to LOC_Os03g20780 (EIL1).
UGT74F1 GeneProduct tair.locus:AT2G43820 Projected from TAIR, homologous to LOC_Os04g12960 (UDP-glucosyl transferase).
AGL14 GeneProduct tair.locus:AT4G11880 Projected from TAIR, homologous to LOC_Os10g39130 (MADS 56).
MPK2 GeneProduct tair.locus:AT1G59580 Projected from TAIR, homologous to LOC_Os02g05480 (MAPK2).
UniProt:MAPK2, BIMK1, MAP3, MAPK5, MPK3, MSRMK2
AT1G21440 GeneProduct tair.locus:AT1G21440 Projected from TAIR, homologous to LOC_Os12g08760 (OsCCP
CYP76C3 GeneProduct tair.locus:AT2G45580 Projected from TAIR, homologous to LOC_Os10g08474 (CYP450 ).
AP2 transcription factor
AT1G63170 GeneProduct tair.locus:AT1G63170 Projected from TAIR, homologous to LOC_Os04g48050 (Ring ZF).
PGL34 GeneProduct tair.locus:AT3G58010 Projected from TAIR, homologous to LOC_Os04g57020 (LOC_Os04g57020).
bZIP16 GeneProduct tair.locus:AT2G35530 Projected from TAIR, homologous to LOC_Os12g13170 (ZIP-1a).
AT4G19820 GeneProduct tair.locus:AT4G19820 Projected from TAIR, homologous to LOC_Os11g27400 (GlyH).
Chitinase
PAKRP1 GeneProduct tair.locus:AT4G14150 Projected from TAIR, homologous to LOC_Os04g28260 (Phragmoplast kinase).
AT1G48630 GeneProduct tair.locus:AT1G48630 Projected from TAIR, homologous to LOC_Os01g49290 (RACK1A).
Also called GPB-LR/ RWD
CKX2 GeneProduct tair.locus:AT2G19500 Projected from TAIR, homologous to LOC_Os01g10110 (CKX2/ Gn1a).
Cytokinin oxidase/dehydrogenase 2
CRU2 GeneProduct tair.locus:AT1G03880 Projected from TAIR, homologous to LOC_Os01g55690 (GluA-1).
ADL6 GeneProduct tair.locus:AT1G10290 Projected from TAIR, homologous to LOC_Os06g13820 (Dynamin).
ATAPRL6 GeneProduct tair.locus:AT4G08930 Projected from TAIR, homologous to LOC_Os02g51850 (APRL3).
Disulfide Isomerase
ARD1 GeneProduct tair.locus:AT4G14716 Projected from TAIR, homologous to LOC_Os03g06620 (ARD2).
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2; Also called IDI1 and SIP2A
AT5G47480 GeneProduct tair.locus:AT5G47480 Projected from TAIR, homologous to LOC_Os06g01650 (FERTILLIN).
NAS4 GeneProduct tair.locus:AT1G56430 Projected from TAIR, homologous to LOC_Os03g19427 (NAS1).
NA synthase gene 1
CYCB1;3 GeneProduct tair.locus:AT3G11520 Projected from TAIR, homologous to LOC_Os01g59120 (CycB1;1).
Seed Shattering
AT3G55060 GeneProduct tair.locus:AT3G55060 Projected from TAIR, homologous to LOC_Os03g20580 (Centromere protein).
CRU2 GeneProduct tair.locus:AT1G03880 Projected from TAIR, homologous to LOC_Os02g16830 (GLUB4).
AT2G30460 GeneProduct tair.locus:AT2G30460 Projected from TAIR, homologous to LOC_Os05g07670 (GPT-A).
Assigned as GPT-A by Nemeth D and Hanumappa M (10/21/2010)
AT3G06620 GeneProduct tair.locus:AT3G06620 Projected from TAIR, homologous to LOC_Os12g37570 (LOC_Os12g37570).
Protein Kinase-UniProt ID
AT2G18110 GeneProduct tair.locus:AT2G18110 Projected from TAIR, homologous to LOC_Os03g29260 ( EF-1-d2).
Elongation factor 1 beta 2
SUS1 GeneProduct tair.locus:AT5G20830 Projected from TAIR, homologous to LOC_Os03g28330 (SUS1).
Sucrose synthase 1
UBC1 GeneProduct tair.locus:AT1G14400 Projected from TAIR, homologous to LOC_Os03g57790 (RAD6).
transcripts of both OsRad6 and OsSgt1 were found to be strongly expressed in the proliferating tissues such SAM
AT4G32000 GeneProduct tair.locus:AT4G32000 Projected from TAIR, homologous to LOC_Os02g08530 (LOC_Os02g08530).
Protein Kinase-UniProt ID
PCNA1 GeneProduct tair.locus:AT1G07370 Projected from TAIR, homologous to LOC_Os02g56130 (PCNA).
Proliferating cell nuclear antigen expressed strongly in the shoot apical meristem
AT4G10390 GeneProduct tair.locus:AT4G10390 Projected from TAIR, homologous to LOC_Os02g43290 (Ser/thr PK).
SEN2 GeneProduct tair.locus:AT5G60230 Projected from TAIR, homologous to LOC_Os11g38930 (TRNA endonuclease).
catalytic C-terminal domain containing protein
SUS1 GeneProduct tair.locus:AT5G20830 Projected from TAIR, homologous to LOC_Os07g42490 (SUS3).
Sucrose synthase 3
ASP1 GeneProduct tair.locus:AT2G37550 Projected from TAIR, homologous to LOC_Os03g17020 (ADP ribosylation GTPase).
BZO2H1 GeneProduct tair.locus:AT4G02640 Projected from TAIR, homologous to LOC_Os03g58250 (REB ).
Symbol assigned by Nemeth D and Hanumappa M (08/19/2010)
PP2A-2 GeneProduct tair.locus:AT1G10430 Projected from TAIR, homologous to LOC_Os02g12580 (PP2A-3).
AT2G24420 GeneProduct tair.locus:AT2G24420 Projected from TAIR, homologous to LOC_Os08g40790 (bip129 ).
WRKY17 GeneProduct tair.locus:AT2G24570 Projected from TAIR, homologous to LOC_Os04g21950 (WRKY 51).
ABA-inducible & GA-repressible WRKY 51 by itself also represses activation of Amy2A by GAMYB
ATSPP1 GeneProduct tair.locus:AT1G51420 Projected from TAIR, homologous to LOC_Os01g27880 (SPP1).
sucrose-phosphatase 1
AT3G02930 GeneProduct tair.locus:AT3G02930 Projected from TAIR, homologous to LOC_Os05g02820 (Myosin like).
CRU2 GeneProduct tair.locus:AT1G03880 Projected from TAIR, homologous to LOC_Os03g31360 (GluA-3).
AtcwINV4 GeneProduct tair.locus:AT2G36190 Projected from TAIR, homologous to LOC_Os02g33110 (CIN1).
ORA59 GeneProduct tair.locus:AT1G06160 Projected from TAIR, homologous to LOC_Os03g64260 (AP2 domain ).
GSR2 GeneProduct tair.locus:AT1G66200 Projected from TAIR, homologous to LOC_Os02g50240 (GLN1-1).
Glutamine synthetase cytosolic isozyme 1-1, also called RGS28 and GS1;1
BHLH100 GeneProduct tair.locus:AT2G41240 Projected from TAIR, homologous to LOC_Os01g72370 (IRO2).
basic/helix-loop-helix 56
ROC1 GeneProduct tair.locus:AT4G38740 Projected from TAIR, homologous to LOC_Os02g02890 (Cyp2).
AT4G24590 GeneProduct tair.locus:AT4G24590 Projected from TAIR, homologous to LOC_Os02g54080 (MADS-box IL).
AT5G61550 GeneProduct tair.locus:AT5G61550 Projected from TAIR, homologous to LOC_Os06g04880 (Ser/thr PK).
ATKDSA2 GeneProduct tair.locus:AT1G16340 Projected from TAIR, homologous to LOC_Os12g10784 (2-d-3-D phosphooctonate aldolase).
SGT1A GeneProduct tair.locus:AT4G23570 Projected from TAIR, homologous to LOC_Os01g43540 (SGT1).
Responds to salicylic acid in chemically induced biotic response
AHA1 GeneProduct tair.locus:AT2G18960 Projected from TAIR, homologous to LOC_Os04g56160 (Plasma membrane ATPase).
AT3G55940 GeneProduct tair.locus:AT3G55940 Projected from TAIR, homologous to LOC_Os07g49330 (Phospholipase C).
ATMYC-2 GeneProduct tair.locus:AT1G63650 Projected from TAIR, homologous to LOC_Os04g47080 (RA).
seed coat color, endosperm color
FBA1 GeneProduct tair.locus:AT2G21330 Projected from TAIR, homologous to LOC_Os11g07020 (ALDP).
Aldolase
C AL GeneProduct tair.locus:AT1G26310 Projected from TAIR, homologous to LOC_Os03g54160 (MADS 14).
Also called AGL10, RAP1B
ATHB12 GeneProduct tair.locus:AT3G61890 Projected from TAIR, homologous to LOC_Os09g35910 (HOX6).
Cooper et al. 2003 called this leucine zipper and misnamed HOX 22 as HOX 6 (22834)
PSBO1 GeneProduct tair.locus:AT5G66570 Projected from TAIR, homologous to LOC_Os01g31690 (PSII-OEP33).
No symbol in gramene so OEP33 was assigned. 33kDa oxygen evolving protein of photosystem II
AT1G09640 GeneProduct tair.locus:AT1G09640 Projected from TAIR, homologous to LOC_Os06g37440 (EF-1-g3).
eEF-1B gamma 3
AT3G61700 GeneProduct tair.locus:AT3G61700 Projected from TAIR, homologous to LOC_Os01g12080 (LOC_Os01g12080).
CAL GeneProduct tair.locus:AT1G26310 Projected from TAIR, homologous to LOC_Os07g01820 (MADS 15).
Also called RAP1A
PP2A-2 GeneProduct tair.locus:AT1G10430 Projected from TAIR, homologous to LOC_Os06g37660 (PP2A1).
PRB1 GeneProduct tair.locus:AT2G14580 Projected from TAIR, homologous to LOC_Os01g28450 (Pr1b).
AT4G22240 GeneProduct tair.locus:AT4G22240 Projected from TAIR, homologous to LOC_Os09g04790 (Fibrillin).
AT1G32430 GeneProduct tair.locus:AT1G32430 Projected from TAIR, homologous to LOC_Os07g35050 (OsFBX237).
Cdc2-related protein kinase
PP2A-3 GeneProduct tair.locus:AT2G42500 Projected from TAIR, homologous to LOC_Os03g59060 (PP2A2).
BZO2H1 GeneProduct tair.locus:AT4G02640 Projected from TAIR, homologous to LOC_Os07g08420 (RISBZ1).
Functionaly redundant and compensatory expression between RISBZI and RPBF. Double Knock-Down mutant (KD-RISBZ1/KD-RPBF) caused most expression change in OsLKR/SDH
AT2G30460 GeneProduct tair.locus:AT2G30460 Projected from TAIR, homologous to LOC_Os01g07310 (GPT2-B).
Assigned as GPT-B by Nemeth D and Hanumappa M (10/21/2010)
CYCD4;2 GeneProduct tair.locus:AT5G10440 Projected from TAIR, homologous to LOC_Os07g42860 (CycD2-2).
ATSPP1 GeneProduct tair.locus:AT1G51420 Projected from TAIR, homologous to LOC_Os02g05030 (SPP2).
sucrose-phosphatase 2
ADK1 GeneProduct tair.locus:AT3G09820 Projected from TAIR, homologous to LOC_Os02g41590 (OsAK).
Adenosine kinase
XDH2 GeneProduct tair.locus:AT4G34900 Projected from TAIR, homologous to LOC_Os03g31550 (AOXDH).
AT1G62660 GeneProduct tair.locus:AT1G62660 Projected from TAIR, homologous to LOC_Os04g45290 (Vin1).
ATHB7 GeneProduct tair.locus:AT2G46680 Projected from TAIR, homologous to LOC_Os04g45810 (HOX 22).
In Cooper et al. 2003 protein sequence provided matches HOX 22, however it was named HOX6 (AF145730)
CF1 GeneProduct tair.locus:AT1G59610 Projected from TAIR, homologous to LOC_Os06g13820 (Dynamin).
ILR1 GeneProduct tair.locus:AT3G02875 Projected from TAIR, homologous to LOC_Os03g62060 (IAA amidohydrolase).
HSP40 GeneProduct :LOC_Os03g44620
bHLH60 GeneProduct :LOC_Os08g04390 Helix-loop-helix TF
AGL8 GeneProduct tair.locus:AT5G60910 Projected from TAIR, homologous to LOC_Os07g41370 (MADS 18).
Also called MADS 28
PPDK GeneProduct tair.locus:AT4G15530 Projected from TAIR, homologous to LOC_Os05g33570 (PPDKB).
Involved in grain filling
AtkdsA1 GeneProduct tair.locus:AT1G79500 Projected from TAIR, homologous to LOC_Os12g10784 (2-d-3-D phosphooctonate aldolase).
PAP85 GeneProduct tair.locus:AT3G22640 Projected from TAIR, homologous to LOC_Os03g57960 (GB2).
Globulin 2
BTB/POZ GeneProduct :LOC_Os10g29390 2-keto-3-deoxy-6-phosphogluconate aldolase
OCP3 GeneProduct tair.locus:AT5G11270 Projected from TAIR, homologous to LOC_Os06g39906 (LOC_Os06g39906 ).
NB-ARC domain protein GeneProduct :LOC_Os11g34880 Jacalin
ZF-like GeneProduct :LOC_Os01g40990
AT4G19200 GeneProduct tair.locus:AT4G19200 Projected from TAIR, homologous to LOC_Os05g02780 (grpA3).
EXPB4 GeneProduct :LOC_Os10g40730 Beta-expansin-4
BMY3 GeneProduct tair.locus:AT5G18670 Projected from TAIR, homologous to LOC_Os07g47120 (Bam 4).
AT1G56700 GeneProduct tair.locus:AT1G56700 Projected from TAIR, homologous to LOC_Os03g25270 (Pyrrolidone-Carboxylpeptidase).
SPS1F GeneProduct tair.locus:AT5G20280 Projected from TAIR, homologous to LOC_Os08g20660 (SPS-O spp).
sucrose-phosphate synthase-Oncidium spp= named after table III on Yamakawa et al. (2007)
IAA31 GeneProduct tair.locus:AT3G17600 Projected from TAIR, homologous to LOC_Os01g18360 (IAA4).
AT2G21130 GeneProduct tair.locus:AT2G21130 Projected from TAIR, homologous to LOC_Os02g02890 (Cyp2).
BMY7 GeneProduct tair.locus:AT3G23920 Projected from TAIR, homologous to LOC_Os03g04770 (Bam 7).
AT5G50100 GeneProduct tair.locus:AT5G50100 Projected from TAIR, homologous to LOC_Os04g57310 (Thioredoxin-like).
thiol-disulphide oxidoreductase DCC
ASKTHETA GeneProduct tair.locus:AT4G00720 Projected from TAIR, homologous to LOC_Os10g37740 (Shaggy kinase).
AT2G47060 GeneProduct tair.locus:AT2G47060 Projected from TAIR, homologous to LOC_Os05g04520 (Pto kinase Interactor 1).
PMI1 GeneProduct tair.locus:AT1G42550 Projected from TAIR, homologous to LOC_Os09g38090 (LOC_Os09g38090).
PCNA2 GeneProduct tair.locus:AT2G29570 Projected from TAIR, homologous to LOC_Os02g56130 (PCNA).
Proliferating cell nuclear antigen expressed strongly in the shoot apical meristem
GDSL-like Lipase GeneProduct :LOC_Os10g05088 SGNH_plant_lipase
PP2A-1 GeneProduct tair.locus:AT1G59830 Projected from TAIR, homologous to LOC_Os02g12580 (PP2A-3).
SEN1 GeneProduct tair.locus:AT3G45590 Projected from TAIR, homologous to LOC_Os11g38930 (TRNA endonuclease).
catalytic C-terminal domain containing protein
SSIV GeneProduct tair.locus:AT4G18240 Projected from TAIR, homologous to LOC_Os05g45720 (SSIVb).
Also called ALK
UGT74F1 GeneProduct tair.locus:AT2G43840 Projected from TAIR, homologous to LOC_Os04g12960 (UDP-glucosyl transferase).
WRKY11 GeneProduct tair.locus:AT4G31550 Projected from TAIR, homologous to LOC_Os04g21950 (WRKY 51).
ABA-inducible & GA-repressible WRKY 51 by itself also represses activation of Amy2A by GAMYB
AT5G35460 GeneProduct tair.locus:AT5G35460 Projected from TAIR, homologous to LOC_Os01g40280 (RSR1).
UBC2 GeneProduct tair.locus:AT2G02760 Projected from TAIR, homologous to LOC_Os03g57790 (RAD6).
transcripts of both OsRad6 and OsSgt1 were found to be strongly expressed in the proliferating tissues such SAM
AT5G02230 GeneProduct tair.locus:AT5G02230 Projected from TAIR, homologous to LOC_Os03g16670 (HAD-like).
AT5G16730 GeneProduct tair.locus:AT5G16730 Projected from TAIR, homologous to LOC_Os05g02820 (Myosin like).
SAM cmtr GeneProduct :LOC_Os02g06770
Kinesin GeneProduct :LOC_Os03g43100
SS3 GeneProduct tair.locus:AT1G11720 Projected from TAIR, homologous to LOC_Os04g53310 (SSIIIb).
Also called ALK
AT1G30230 GeneProduct tair.locus:AT1G30230 Projected from TAIR, homologous to LOC_Os03g29260 ( EF-1-d2).
Elongation factor 1 beta 2
PKT3 GeneProduct tair.locus:AT2G33150 Projected from TAIR, homologous to LOC_Os02g57260 (Keto acyl CoA thiolase).
AT1G47390 GeneProduct tair.locus:AT1G47390 Projected from TAIR, homologous to LOC_Os07g35050 (OsFBX237).
Cdc2-related protein kinase
bZIP68 GeneProduct tair.locus:AT1G32150 Projected from TAIR, homologous to LOC_Os12g13170 (ZIP-1a).
eIFiso4G1 GeneProduct tair.locus:AT5G57870 Projected from TAIR, homologous to LOC_Os04g42140 (eif(iso)4g).
Fructose-6-phosphate 1-phosphotransferase GeneProduct :LOC_Os08g25720
CRU1 GeneProduct tair.locus:AT5G44120 Projected from TAIR, homologous to LOC_Os03g31360 (GluA-3).
TEM2 GeneProduct tair.locus:AT1G68840 Projected from TAIR, homologous to LOC_Os01g49830 (RAV1-like).
AT2G46140 GeneProduct tair.locus:AT2G46140 Projected from TAIR, homologous to LOC_Os05g50710 (LEA 14-A).
GABA permease GeneProduct :LOC_Os01g71720 Amino acid/polyamine transporter
OsIAA13 GeneProduct :LOC_Os03g53150
AT5G44080 GeneProduct tair.locus:AT5G44080 Projected from TAIR, homologous to LOC_Os01g64730 (OSE2).
bZIP transcription factor domain containing protein
MPK1 GeneProduct tair.locus:AT1G10210 Projected from TAIR, homologous to LOC_Os02g05480 (MAPK2).
UniProt:MAPK2, BIMK1, MAP3, MAPK5, MPK3, MSRMK2
AT2G05830 GeneProduct tair.locus:AT2G05830 Projected from TAIR, homologous to LOC_Os11g11050 (IDI2).
Initiation factor 2 subunit family protein
ATERF4 GeneProduct tair.locus:AT3G15210 Projected from TAIR, homologous to LOC_Os01g58420 (AP37).
SNAC1 GeneProduct :LOC_Os03g60080
IDS1/ MT4A GeneProduct :LOC_Os12g38270
GBSSII GeneProduct :LOC_Os07g22930 Also called ALK
AT4G25160 GeneProduct tair.locus:AT4G25160 Projected from TAIR, homologous to LOC_Os06g04880 (Ser/thr PK).
AT3G17850 GeneProduct tair.locus:AT3G17850 Projected from TAIR, homologous to LOC_Os03g50390 (LOC_Os03g50390).
Protein Kinase-UniProt ID
AT2G28440 GeneProduct tair.locus:AT2G28440 Projected from TAIR, homologous to LOC_Os05g13940 (PRP1).
AT1G56560 GeneProduct tair.locus:AT1G56560 Projected from TAIR, homologous to LOC_Os01g22900 (INV2).
Neutral/alkaline invertase 2 Assigned as NA-INV1 by Nemeth D and Hanumappa M (10/21/2010)
GLT1 GeneProduct tair.locus:AT5G53460 Projected from TAIR, homologous to LOC_Os05g48200 (Phosphoglucomutase).
AT2G45300 GeneProduct tair.locus:AT2G45300 Projected from TAIR, homologous to LOC_Os06g04280 ( EPSPS1).
5-Enolpyruvylshikimate-3-phosphate synthase 1
APL4/ AGPL4 GeneProduct :LOC_Os07g13980
CYCD4;1 GeneProduct tair.locus:AT5G65420 Projected from TAIR, homologous to LOC_Os07g42860 (CycD2-2).
ATAMY1 GeneProduct tair.locus:AT4G25000 Projected from TAIR, homologous to LOC_Os09g28400 (Amy3A).
AT5G59010 GeneProduct tair.locus:AT5G59010 Projected from TAIR, homologous to LOC_Os03g61010 (TPR-PK).
Putative protein kinase
SPS-Zm GeneProduct :LOC_Os06g42824 sucrose-phosphate synthase-Zea mays= named after table III on Yamakawa et al. (2007)
AT5G47490 GeneProduct tair.locus:AT5G47490 Projected from TAIR, homologous to LOC_Os06g01650 (FERTILLIN).
Disease resistance-like GeneProduct :LOC_Os12g40490 LIM domain-containing protein, putative, expressed
AT4G31340 GeneProduct tair.locus:AT4G31340 Projected from TAIR, homologous to LOC_Os08g40790 (bip129 ).
KAB1 GeneProduct tair.locus:AT1G04690 Projected from TAIR, homologous to LOC_Os02g57240 (KOB1).
Probable voltage-gated potassium channel subunit beta
GPA1 GeneProduct tair.locus:AT2G26300 Projected from TAIR, homologous to LOC_Os05g26890 (GP-alpha-1).
G-alpha protein also called GPA1/D1/GA1
AT1G22410 GeneProduct tair.locus:AT1G22410 Projected from TAIR, homologous to LOC_Os03g27230 (DAHPS1).
3-deoxy-D-arabino heptulosonate-7-phosphate synthase 1
AT5G36160 GeneProduct tair.locus:AT5G36160 Projected from TAIR, homologous to LOC_Os02g20360 (NAAT1).
nicotianamine aminotransferase
NAC5 GeneProduct :LOC_Os11g08210 ABA related
SS3 GeneProduct tair.locus:AT1G11720 Projected from TAIR, homologous to LOC_Os08g09230 (SSIIIa/ Flo5).
expression diminished during grain filling at high temperatures
AMY3 GeneProduct tair.locus:AT1G69830 Projected from TAIR, homologous to LOC_Os01g51754 (Amy4A).
NAC2 GeneProduct tair.locus:AT5G04410 Projected from TAIR, homologous to LOC_Os02g57650 (NAC2).
AT1G60900 GeneProduct tair.locus:AT1G60900 Projected from TAIR, homologous to LOC_Os11g41820 (U2 snRNP).
SPS-So GeneProduct :LOC_Os06g43630 sucrose-phosphate synthase-Saccharum officinarum= named after table III on Yamakawa et al. (2007)
PR1 GeneProduct tair.locus:AT2G14610 Projected from TAIR, homologous to LOC_Os01g28450 (Pr1b).
CRU1 GeneProduct tair.locus:AT5G44120 Projected from TAIR, homologous to LOC_Os10g26060 (GluA-2).
ATMTAN2 GeneProduct tair.locus:AT4G34840 Projected from TAIR, homologous to LOC_Os06g02220 (MTN).
Methylthioadenosine/S-adenosyl homocysteine nucleosidase
RPS20 GeneProduct :LOC_Os06g04290 P35686
AT3G44620 GeneProduct tair.locus:AT3G44620 Projected from TAIR, homologous to LOC_Os08g44320 (Phosphotyrosine).
AT1G33260 GeneProduct tair.locus:AT1G33260 Projected from TAIR, homologous to LOC_Os02g43290 (Ser/thr PK).
ZOS1-15 GeneProduct :LOC_Os01g62190 Salt-stress ABA related
SEP3 GeneProduct tair.locus:AT1G24260 Projected from TAIR, homologous to LOC_Os08g41950 (MADS7/45).
also called MADS 45, AGL6, M79
ATARD2 GeneProduct tair.locus:AT4G14710 Projected from TAIR, homologous to LOC_Os03g06620 (ARD2).
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2; Also called IDI1 and SIP2A
MYB33 GeneProduct tair.locus:AT5G06100 Projected from TAIR, homologous to LOC_Os01g59660 (GAMYB).
regulates GA induction of Amy2A
ALDH7B4 GeneProduct tair.locus:AT1G54100 Projected from TAIR, homologous to LOC_Os09g26880 (ALDH7).
Needed for seed maturation and viability. Expression Patterns during Seed Development Correspond with Pigment Accumulation Patterns in Seeds Plays a role in the removal of MDA that forms during seed desiccation
DOF ZF GeneProduct :LOC_Os02g49440
WRKY40 GeneProduct tair.locus:AT1G80840 Projected from TAIR, homologous to LOC_Os02g08440 (WRKY 71).
ABA-inducible & GA-repressible Interaction between WRKY 51 and 71 enhances the binding affinity of WRKY71 to the Amy32b promoter WRKY 71 by itself also represses activation of Amy2A by GAMYB
CIB22 GeneProduct tair.locus:AT4G34700 Projected from TAIR, homologous to LOC_Os06g50000 (Complex 1L).
Assigned as Complex 1L by Nemeth D and Hanumappa M (10/21/2010) complex 1 family protein-like (LYR family)
PP2A-B GeneProduct :LOC_Os05g40350
GF14A GeneProduct :LOC_Os08g37490 WIN2, WIP2
PROLM26 GeneProduct :LOC_Os07g10580 Prolamin precursor, also called RP5
MT2b GeneProduct :LOC_Os05g02070
IAA1 GeneProduct :LOC_Os01g08320
LOC_Os01g14110 GeneProduct :LOC_Os01g14110 Assigned as bHLH-tf by Nemeth D and Hanumappa M (10/21/2010)
TAP46 GeneProduct tair.locus:AT5G53000 Projected from TAIR, homologous to LOC_Os12g04290 (TAP46).
Pit GeneProduct :LOC_Os01g05620
AAP6 GeneProduct tair.locus:AT5G49630 Projected from TAIR, homologous to LOC_Os07g04180 (Permease).
SSII-3 GeneProduct :LOC_Os06g12450 expression diminished during grain filling at high temperatures
SUS6 GeneProduct tair.locus:AT1G73370 Projected from TAIR, homologous to LOC_Os04g24430 (SuSy6).
Sucrose synthase 6
NAC 10 GeneProduct :LOC_Os11g03300
AT5G59210 GeneProduct tair.locus:AT5G59210 Projected from TAIR, homologous to LOC_Os03g16120 (Myosin like).
Sub9 GeneProduct :LOC_Os01g58290 Amino acid transporters
AT3G60320 GeneProduct tair.locus:AT3G60320 Projected from TAIR, homologous to LOC_Os10g41310 (DUF630).
Symbol assigned by Nemeth D and Hanumappa M (08/19/2010)
CACTA, En/Spm GeneProduct :LOC_Os01g09220
CDKA-2 GeneProduct :LOC_Os02g03060
PHT4;3 GeneProduct tair.locus:AT3G46980 Projected from TAIR, homologous to LOC_Os01g63290 (PHT4;3).
Na+ dep inorg phosphate cotransporter
Oryzain alpha Protease GeneProduct :LOC_Os04g55650
msrB-1 GeneProduct :LOC_Os03g24600 2 more IDs found on Gramene. Hence called 1, 2 and 3 to differentiate. LOC_Os06g27760=msrB-2, LOC_Os05g33510=msrB-3 (D Nemeth and M Hanumappa 08/17/2010).
Type your comment here
AT5G59750 GeneProduct tair.locus:AT5G59750 Projected from TAIR, homologous to LOC_Os05g38570 (GTP cyclohydrolase).
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase
UCH3 GeneProduct tair.locus:AT4G17510 Projected from TAIR, homologous to LOC_Os02g43760 (Ubiquitin proteinase).
ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
PP2A-1 GeneProduct tair.locus:AT1G59830 Projected from TAIR, homologous to LOC_Os06g37660 (PP2A1).
LOC_Os01g62740 GeneProduct :LOC_Os01g62740
BMY7 GeneProduct tair.locus:AT3G23920 Projected from TAIR, homologous to LOC_Os10g32810 (Bam 5).
ERF15 GeneProduct tair.locus:AT2G31230 Projected from TAIR, homologous to LOC_Os03g64260 (AP2 domain ).
SUVR4 GeneProduct tair.locus:AT3G04380 Projected from TAIR, homologous to LOC_Os02g40770 (SET domain protein).
histone-lysine N-methyltransferase
HCF173 GeneProduct tair.locus:AT1G16720 Projected from TAIR, homologous to LOC_Os06g49120 (UOS1).
NAD(P)-binding/Rossman fold
SPK GeneProduct :LOC_Os10g39420 required for storage product accumulation during seed development seed-specific protein kinase
AG GeneProduct tair.locus:AT4G18960 Projected from TAIR, homologous to LOC_Os01g10504 (MADS 3).
Also called RAG
USP1 GeneProduct :LOC_Os07g47620 ETFP adenine nucleotide
LOC_Os03g56940 GeneProduct :LOC_Os03g56940
AT1G06890 GeneProduct tair.locus:AT1G06890 Projected from TAIR, homologous to LOC_Os01g07310 (GPT2-B).
Assigned as GPT-B by Nemeth D and Hanumappa M (10/21/2010)
ATBT1 GeneProduct tair.locus:AT4G32400 Projected from TAIR, homologous to LOC_Os05g07900 (BT1-1).
SPS-Hv GeneProduct :LOC_Os02g09170 sucrose-phosphate synthase-Hordeum vulgare= named after table III on Yamakawa et al. (2007)
AT3G29010 GeneProduct tair.locus:AT3G29010 Projected from TAIR, homologous to LOC_Os08g33810 (LPLA).
NAS2 GeneProduct :LOC_Os03g19420 NA synthase gene 2
AT1G78420 GeneProduct tair.locus:AT1G78420 Projected from TAIR, homologous to LOC_Os02g14720 (GW2).
encodes a RING protein with E3 ubiquitin ligase activity
GDSL-like Lipase GeneProduct :LOC_Os01g11650
ARF1 GeneProduct :LOC_Os11g32110
AT1G20810 GeneProduct tair.locus:AT1G20810 Projected from TAIR, homologous to LOC_Os02g02550 (UGP
DEP GeneProduct :LOC_Os11g29370 Haloacid dehalogenase-like hydrolase family protein
flavanone 3-hydroxylase GeneProduct :LOC_Os08g37456 2-oxoglutarate (2OG) - Fe(II) oxygenase
BBTI4 GeneProduct :LOC_Os01g03340 Bowman-Birk type bran trypsin inhibitor
HMG1 GeneProduct :LOC_Os06g51220
PPROL 14 E GeneProduct :LOC_Os05g26377 13 kDa Prolamin, also called PPROL 14, PPROL 4A, PPROL 7, PG5a, PROLM 8, PROLM 9, UniProt ID: Q95737
CWINV2 GeneProduct tair.locus:AT3G52600 Projected from TAIR, homologous to LOC_Os02g33110 (CIN1).
AGD6 GeneProduct tair.locus:AT3G53710 Projected from TAIR, homologous to LOC_Os03g17020 (ADP ribosylation GTPase).
AGL6 GeneProduct tair.locus:AT2G45650 Projected from TAIR, homologous to LOC_Os02g45770 (MADS 6).
Also called MFO1
CRU1 GeneProduct tair.locus:AT5G44120 Projected from TAIR, homologous to LOC_Os02g16830 (GLUB4).
SUS3 GeneProduct tair.locus:AT4G02280 Projected from TAIR, homologous to LOC_Os03g22120 (SuSy4).
Sucrose synthase 4
GRF7 GeneProduct tair.locus:AT3G02520 Projected from TAIR, homologous to LOC_Os02g36974 (GF14-e).
CDKA1 GeneProduct tair.locus:AT3G48750 Projected from TAIR, homologous to LOC_Os03g02680 (CDKA-1).
anac103 GeneProduct tair.locus:AT5G64060 Projected from TAIR, homologous to LOC_Os05g35170 (IDEF2).
IDE-binding factor 2
SUS4 GeneProduct tair.locus:AT3G43190 Projected from TAIR, homologous to LOC_Os03g28330 (SUS1).
Sucrose synthase 1
AT2G46420 GeneProduct tair.locus:AT2G46420 Projected from TAIR, homologous to LOC_Os01g12080 (LOC_Os01g12080).
ATAMY1 GeneProduct tair.locus:AT4G25000 Projected from TAIR, homologous to LOC_Os08g36900 (Amy3E).
prx61 GeneProduct :LOC_Os04g59190 Class III peroxidase 61
MADS 13 GeneProduct :LOC_Os12g10540 Also called MAF1
SWEET3 GeneProduct tair.locus:AT5G53190 Projected from TAIR, homologous to LOC_Os05g12320 (SWEET3a).
EMB2729 GeneProduct tair.locus:AT3G20440 Projected from TAIR, homologous to LOC_Os06g26234 (BEIII).
sks17 GeneProduct tair.locus:AT5G66920 Projected from TAIR, homologous to LOC_Os07g02810 (Pectinesterase).
VIP1-like GeneProduct :LOC_Os06g02240
AREB3 GeneProduct tair.locus:AT3G56850 Projected from TAIR, homologous to LOC_Os05g41070 (AREB).
PPDK GeneProduct tair.locus:AT4G15530 Projected from TAIR, homologous to LOC_Os03g31750 (PPDKA).
Assigned as GPT-B by Nemeth D and Hanumappa M (10/21/2010)
ATPU1 GeneProduct tair.locus:AT5G04360 Projected from TAIR, homologous to LOC_Os04g08270 (PUL).
expression diminished during grain filling at high temperatures
COL9 GeneProduct tair.locus:AT3G07650 Projected from TAIR, homologous to LOC_Os02g49230 (CCT/B-box zinc finger ).
CWINV2 GeneProduct tair.locus:AT3G52600 Projected from TAIR, homologous to LOC_Os04g33720 (CIN3).
TUBB3 GeneProduct :LOC_Os06g46000 Tubulin beta-3 chain
EFE GeneProduct tair.locus:AT1G05010 Projected from TAIR, homologous to LOC_Os09g27750 (ACO1).
AT3G12630 GeneProduct tair.locus:AT3G12630 Projected from TAIR, homologous to LOC_Os08g39450 (SAP11).
Also called ZFP60
SVP GeneProduct tair.locus:AT2G22540 Projected from TAIR, homologous to LOC_Os03g08754 (MADS 47).
Also called MDP
KRP3 GeneProduct :LOC_Os11g40030
DMAS1 GeneProduct :LOC_Os03g13390 Deoxymugineic acid synthase1
CIN5 GeneProduct :LOC_Os04g56930
LOC_Os03g07360 GeneProduct :LOC_Os03g07360
RIC1 GeneProduct :LOC_Os01g37800
RBCL GeneProduct tair.locus:ATCG00490 Projected from TAIR, homologous to LOC_Os10g21268 (rbcL).
CWINV2 GeneProduct tair.locus:AT3G52600 Projected from TAIR, homologous to LOC_Os04g33740 (CIN2).
AT5G52580 GeneProduct tair.locus:AT5G52580 Projected from TAIR, homologous to LOC_Os02g48000 (DEK1).
GL3 GeneProduct tair.locus:AT5G41315 Projected from TAIR, homologous to LOC_Os04g47080 (RA).
seed coat color, endosperm color
AtHsp90.2 GeneProduct tair.locus:AT5G56030 Projected from TAIR, homologous to LOC_Os09g30418 (HSP90).
Also called HSP81-2
GF14F GeneProduct :LOC_Os03g50290 G-box factor 14-3-3 f
PSB29 GeneProduct tair.locus:AT2G20890 Projected from TAIR, homologous to LOC_Os07g37250 (THF1).
Inositol phosphatase
ADK2 GeneProduct tair.locus:AT5G03300 Projected from TAIR, homologous to LOC_Os02g41590 (OsAK).
Adenosine kinase
ALDH10A8 GeneProduct tair.locus:AT1G74920 Projected from TAIR, homologous to LOC_Os08g32870 (BADH2).
SCENTED KERNEL 2 (fragrance) betaine-aldehyde dehydrogenase 2
GPT2 GeneProduct tair.locus:AT1G61800 Projected from TAIR, homologous to LOC_Os08g08840 (GPT1).
BEI GeneProduct :LOC_Os06g51084 expression diminished during grain filling at high temperatures
ING1 GeneProduct tair.locus:AT3G24010 Projected from TAIR, homologous to LOC_Os03g04980 (PHD zf).
AT1G04770 GeneProduct tair.locus:AT1G04770 Projected from TAIR, homologous to LOC_Os05g43040 (Male sterility protein).
AT1G57720 GeneProduct tair.locus:AT1G57720 Projected from TAIR, homologous to LOC_Os06g37440 (EF-1-g3).
eEF-1B gamma 3
LOC_Os08g04580 GeneProduct :LOC_Os08g04580 Thioredoxin
CDF2 GeneProduct tair.locus:AT5G39660 Projected from TAIR, homologous to LOC_Os07g48570 (AOPBP-L).
CRL1 GeneProduct :LOC_Os03g05510
VIP1 GeneProduct tair.locus:AT1G43700 Projected from TAIR, homologous to LOC_Os11g06170 (bZIP).
CKX4 GeneProduct tair.locus:AT4G29740 Projected from TAIR, homologous to LOC_Os01g10110 (CKX2/ Gn1a).
Cytokinin oxidase/dehydrogenase 2
EIN3 GeneProduct tair.locus:AT3G20770 Projected from TAIR, homologous to LOC_Os03g20780 (EIL1).
PHD Zn-finger GeneProduct :LOC_Os11g12650
AHOX GeneProduct :LOC_Os10g39030 Associated with HOX family protein, expressed (UniProt Q8LN25)- Assigned as AHOX by Nemeth D and Hanumappa M (08/19/2010)
SMT1 GeneProduct tair.locus:AT5G13710 Projected from TAIR, homologous to LOC_Os07g10600 (Smt1-1).
Cycloartenol-C24-methyltransferase
SBE2.2 GeneProduct tair.locus:AT5G03650 Projected from TAIR, homologous to LOC_Os02g32660 (SBEIIb).
expression diminished during grain filling at high temperatures
MTACP1 GeneProduct tair.locus:AT2G44620 Projected from TAIR, homologous to LOC_Os07g12150 (Acyl carrier).
FIB GeneProduct tair.locus:AT4G04020 Projected from TAIR, homologous to LOC_Os09g04790 (Fibrillin).
AT4G33150 GeneProduct tair.locus:AT4G33150 Projected from TAIR, homologous to LOC_Os02g54254 (OsLKR).
anac075 GeneProduct tair.locus:AT4G29230 Projected from TAIR, homologous to LOC_Os01g09550 (NAC075).
ATVDAC2 GeneProduct tair.locus:AT5G67500 Projected from TAIR, homologous to LOC_Os03g10510 (VDAC5).
LTPL109 GeneProduct :LOC_Os07g37385 Extensin_2
NAS3 GeneProduct tair.locus:AT1G09240 Projected from TAIR, homologous to LOC_Os03g19427 (NAS1).
NA synthase gene 1
scpl40 GeneProduct tair.locus:AT3G63470 Projected from TAIR, homologous to LOC_Os07g46350 (SCP40).
Serine carboxypesidase
BT3 GeneProduct tair.locus:AT1G05690 Projected from TAIR, homologous to LOC_Os01g66890 (BTB-TAZ).
AT1G14710 GeneProduct tair.locus:AT1G14710 Projected from TAIR, homologous to LOC_Os03g13560 (HRGP).
Hydroxyproline-rich glycoprotein family protein-UniPret ID
YSL2 GeneProduct :LOC_Os02g43370 yellow stripe 1-like
RALF24 GeneProduct :LOC_Os11g26340 Rapid ALkalinization Factor
DUF584 GeneProduct :LOC_Os05g45450
SUS6 GeneProduct tair.locus:AT1G73370 Projected from TAIR, homologous to LOC_Os02g58480 (SuSy5).
Sucrose synthase 5
LEC2 GeneProduct tair.locus:AT1G28300 Projected from TAIR, homologous to LOC_Os08g01090 (IDEF1).
IDE-binding factor 2
AtPHR1 GeneProduct tair.locus:AT4G28610 Projected from TAIR, homologous to LOC_Os07g25710 (PSRR-L).
Phosphate starvation response regulator
AT1G80570 GeneProduct tair.locus:AT1G80570 Projected from TAIR, homologous to LOC_Os12g33230 (FBL60).
Leucine rich repeat
CYP450 GeneProduct :LOC_Os09g10340
Integrase GeneProduct :LOC_Os11g11694
MADS 1 GeneProduct :LOC_Os03g11614 Also called LHS1
AT5G53050 GeneProduct tair.locus:AT5G53050 Projected from TAIR, homologous to LOC_Os02g19650 (Hydrolase ).
Iron/ascorbate oxidoreductases
PAKRP1L GeneProduct tair.locus:AT3G23670 Projected from TAIR, homologous to LOC_Os04g28260 (Phragmoplast kinase).
WRKY 55 GeneProduct :LOC_Os03g20550
BMY1 GeneProduct tair.locus:AT4G15210 Projected from TAIR, homologous to LOC_Os07g35940 (Bam 2).
CYCA1;1 GeneProduct tair.locus:AT1G44110 Projected from TAIR, homologous to LOC_Os01g13260 (CycA1-1).
Retrotransposon GeneProduct :LOC_Os12g24050 Sulfotransferase
AT1G56560 GeneProduct tair.locus:AT1G56560 Projected from TAIR, homologous to LOC_Os03g20020 (beta-fructofuranosidase).
Neutral/alkaline invertase 1 Assigned as NA-INV1 by Nemeth D and Hanumappa M (10/21/2010)
AT1G22040 GeneProduct tair.locus:AT1G22040 Projected from TAIR, homologous to LOC_Os10g21930 (FBK21).
F-box domain and kelch repeat containing protein
AGL19 GeneProduct tair.locus:AT4G22950 Projected from TAIR, homologous to LOC_Os10g39130 (MADS 56).
HSP70 GeneProduct :LOC_Os12g14070
PP2A-4 GeneProduct tair.locus:AT3G58500 Projected from TAIR, homologous to LOC_Os03g59060 (PP2A2).
SUT3 GeneProduct :LOC_Os10g26470
SSIV GeneProduct tair.locus:AT4G18240 Projected from TAIR, homologous to LOC_Os05g45720 (SSIVb).
CYP716A1 GeneProduct tair.locus:AT5G36110 Projected from TAIR, homologous to LOC_Os07g33480 (taxane 10-beta-hydroxylase).
Glutamate synthase cytochrome P450 domain containing protein
AT5G25940 GeneProduct tair.locus:AT5G25940 Projected from TAIR, homologous to LOC_Os06g05010 (ENOD93-1).
AT1G30230 GeneProduct tair.locus:AT1G30230 Projected from TAIR, homologous to LOC_Os07g42300 (EF-1-d1).
EF-1B beta 1, EF-1-beta
DPE2 GeneProduct tair.locus:AT2G40840 Projected from TAIR, homologous to LOC_Os07g46790 (DPE2).
Also called ALK
AT1G63220 GeneProduct tair.locus:AT1G63220 Projected from TAIR, homologous to LOC_Os04g44870 (ERG3).
RPP16
ATARD2 GeneProduct tair.locus:AT4G14710 Projected from TAIR, homologous to LOC_Os10g28350 (SIP2).
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 Ethylene induced
AtAGAL2 GeneProduct tair.locus:AT5G08370 Projected from TAIR, homologous to LOC_Os10g35110 (Gal1).
EDM1 GeneProduct tair.locus:AT4G11260 Projected from TAIR, homologous to LOC_Os01g43540 (SGT1).
Responds to salicylic acid in chemically induced biotic response
AT2G35900 GeneProduct tair.locus:AT2G35900 Projected from TAIR, homologous to LOC_Os01g56470 (Mal d 1-AP).
AT4G19810 GeneProduct tair.locus:AT4G19810 Projected from TAIR, homologous to LOC_Os11g27400 (GlyH).
Chitinase
ABI3 GeneProduct tair.locus:AT3G24650 Projected from TAIR, homologous to LOC_Os01g68370 (VP1).
Interaction with Wsi18 and Lea3 by orthology to H vulgare ABA-related Seed dormancy Interaction with Wsi18 and Lea3 by orthology to H vulgare
AT3G20800 GeneProduct tair.locus:AT3G20800 Projected from TAIR, homologous to LOC_Os04g52340 (Rcd1-L).
Also given LOC_Os07g37790 and LOC_Os03g57130
IAA9 GeneProduct :LOC_Os02g56120
DET3 GeneProduct tair.locus:AT1G12840 Projected from TAIR, homologous to LOC_Os05g51530 (vATP synthase C).
GPT2-3 GeneProduct :LOC_Os07g33910
OsPRP1 GeneProduct :LOC_Os10g05970 Proline rich protein
Amy2A GeneProduct :LOC_Os06g49970 ABA-repressible and GA-inducible
ATAF1 GeneProduct tair.locus:AT1G01720 Projected from TAIR, homologous to LOC_Os01g66120 (SNAC2).
ABA-related
BT1-2 GeneProduct :LOC_Os02g10800
PMA2 GeneProduct tair.locus:AT4G30190 Projected from TAIR, homologous to LOC_Os04g56160 (Plasma membrane ATPase).
BHLH039 GeneProduct tair.locus:AT3G56980 Projected from TAIR, homologous to LOC_Os01g72370 (IRO2).
basic/helix-loop-helix 56
AT4G32600 GeneProduct tair.locus:AT4G32600 Projected from TAIR, homologous to LOC_Os02g54624 (ATP synthetase a).
AT2G35840 GeneProduct tair.locus:AT2G35840 Projected from TAIR, homologous to LOC_Os02g05030 (SPP2).
sucrose-phosphatase 2
SEP3 GeneProduct tair.locus:AT1G24260 Projected from TAIR, homologous to LOC_Os09g32948 (MADS 8).
Also called MADS 24
SUS4 GeneProduct tair.locus:AT3G43190 Projected from TAIR, homologous to LOC_Os06g09450 (SUS2).
Sucrose synthase 2
Ubi GeneProduct :LOC_Os09g31031
AGL6 GeneProduct tair.locus:AT2G45650 Projected from TAIR, homologous to LOC_Os04g49150 (MADS17).
Also called NMADS3 and RMADS213
C3H1 GeneProduct :LOC_Os01g07930 Zinc finger CCCH domain-containing protein Glutaredoxin-related
APL2 GeneProduct :LOC_Os01g44220 ADP-glucose Pyrophosphorylase large subunit 2, binding only happens with APS2b SSP genes examined was significantly suppressed in KD-RISBZ1/KD-RPBF expression diminished during grain filling at high temperatures
AT1G74240 GeneProduct tair.locus:AT1G74240 Projected from TAIR, homologous to LOC_Os03g11510 (Mitrochondrial carrier).
AT5G42740 GeneProduct tair.locus:AT5G42740 Projected from TAIR, homologous to LOC_Os06g14510 (PGI-b).
MADS 22 GeneProduct :LOC_Os02g52340 Also called RMD1
CRU1 GeneProduct tair.locus:AT5G44120 Projected from TAIR, homologous to LOC_Os02g15090 (GluC).
ISA1 GeneProduct tair.locus:AT2G39930 Projected from TAIR, homologous to LOC_Os08g40930 (ISA1).
expression diminished during grain filling at high temperatures
E3-Ubi Ligase GeneProduct :LOC_Os05g47780
DUF151 GeneProduct :LOC_Os01g50622
PHS2 GeneProduct tair.locus:AT3G46970 Projected from TAIR, homologous to LOC_Os01g63270 (PHOH).
Also called ALK
SUS4 GeneProduct tair.locus:AT3G43190 Projected from TAIR, homologous to LOC_Os07g42490 (SUS3).
Sucrose synthase 3
AT1G12760 GeneProduct tair.locus:AT1G12760 Projected from TAIR, homologous to LOC_Os04g48050 (Ring ZF).
ADG1 GeneProduct tair.locus:AT5G48300 Projected from TAIR, homologous to LOC_Os08g25734 (APS2a).
Also called AGPS2, ADP-glucose Pyrophosphorylase small subunit 2; SSP genes examined was significantly suppressed in KD-RISBZ1/KD-RPBF has two different transcripts= a:in leaf, b:in endosperm; binding with APL2 and Down regulation by RISBZ1 only happens with APS2b, binding with APL1 only happens with APS2a expression diminished during grain filling at high temperatures
ATBETAFRUCT4 GeneProduct tair.locus:AT1G12240 Projected from TAIR, homologous to LOC_Os04g45290 (Vin1).
CIN4 GeneProduct :LOC_Os01g73580
RB GeneProduct :LOC_Os01g39580 seed coat color, endosperm color
NAC4 GeneProduct :LOC_Os01g60020
AP1 GeneProduct tair.locus:AT1G69120 Projected from TAIR, homologous to LOC_Os07g01820 (MADS 15).
Also called RAP1A
ISA3 GeneProduct :LOC_Os09g29404
AT1G70820 GeneProduct tair.locus:AT1G70820 Projected from TAIR, homologous to LOC_Os06g28194 (phosphomannomutase).
Soluble epoxide hydrolase
CIN7 GeneProduct :LOC_Os09g08072
ATDAD1 GeneProduct tair.locus:AT1G32210 Projected from TAIR, homologous to LOC_Os04g32550 (DAD1).
Defender against cell death 1
double-stranded beta-helix domain GeneProduct :LOC_Os11g06370
AP3 GeneProduct tair.locus:AT3G54340 Projected from TAIR, homologous to LOC_Os06g49840 (MADS 16).
Bam 3 GeneProduct :LOC_Os07g35880
AT1G77670 GeneProduct tair.locus:AT1G77670 Projected from TAIR, homologous to LOC_Os09g28050 (IDI4).
asparate aminotransferase
UGP GeneProduct tair.locus:AT3G03250 Projected from TAIR, homologous to LOC_Os02g02560 (UGP2
RPBF GeneProduct :LOC_Os02g15350 Functionaly redundant and compensatory expression between RISBZI and RPBF except for OsLKR/SDH double KD mutant (KD-RISBZ1/KD-RPBF) caused most expression change
SAL1 GeneProduct :LOC_Os06g43590
ATAMY1 GeneProduct tair.locus:AT4G25000 Projected from TAIR, homologous to LOC_Os08g36910 (Amy3D).
AT1G11900 GeneProduct tair.locus:AT1G11900 Projected from TAIR, homologous to LOC_Os05g40320 (PPR bZIP).
Symbol assigned by Nemeth D and Hanumappa M (08/19/2010)
TyrK GeneProduct :LOC_Os11g15340 SAM dependent carboxyl methyltransferase
NFXL1 GeneProduct tair.locus:AT1G10170 Projected from TAIR, homologous to LOC_Os06g14190 (LOC_Os06g14190).
AT1G12840 GeneProduct tair.locus:AT1G60070 Projected from TAIR, homologous to LOC_Os06g07090 (AP-1gamma-1).
APS1 GeneProduct :LOC_Os09g12660 ADP-glucose Pyrophosphorylase small subunit 1  expression diminished during grain filling at high temperatures
GRF7 GeneProduct tair.locus:AT3G02520 Projected from TAIR, homologous to LOC_Os04g38870 (GF14b).
ATAMY1 GeneProduct tair.locus:AT4G25000 Projected from TAIR, homologous to LOC_Os02g52710 (Amy1A).
RACK1A GeneProduct tair.locus:AT1G18080 Projected from TAIR, homologous to LOC_Os01g49290 (RACK1A).
Also called GPB-LR/ RWD
APT1 GeneProduct tair.locus:AT1G27450 Projected from TAIR, homologous to LOC_Os12g39860 (APT1).
Adenine phosphoribosyltransferase 1
BMY8 GeneProduct tair.locus:AT4G17090 Projected from TAIR, homologous to LOC_Os10g41550 (Bam 1).
ATHB7 GeneProduct tair.locus:AT2G46680 Projected from TAIR, homologous to LOC_Os09g35910 (HOX6).
Cooper et al. 2003 called this leucine zipper and misnamed HOX 22 as HOX 6 (22834)
WCRKC1 GeneProduct tair.locus:AT5G06690 Projected from TAIR, homologous to LOC_Os02g53400 (TLR31).
Translational repressor MPT5/PUF4
AT3G29320 GeneProduct tair.locus:AT3G29320 Projected from TAIR, homologous to LOC_Os03g55090 (PHOL
AT2G36950 GeneProduct tair.locus:AT2G36950 Projected from TAIR, homologous to LOC_Os10g30450 (LOC_Os10g30450 ).
Unknown-UniProt ID
ADG2 GeneProduct tair.locus:AT5G19220 Projected from TAIR, homologous to LOC_Os03g52460 (APL3).
Sci2 GeneProduct :LOC_Os01g42860
PSBC GeneProduct tair.locus:ATCG00280 Projected from TAIR, homologous to LOC_Os02g24632 (psbC ).
b-1,3-Glucanase GeneProduct :LOC_Os03g25790
ICL GeneProduct tair.locus:AT3G21720 Projected from TAIR, homologous to LOC_Os07g34520 (Isocitrate lyase).
AGL44 GeneProduct tair.locus:AT2G14210 Projected from TAIR, homologous to LOC_Os02g49840 (MADS 57).
NFU4 GeneProduct tair.locus:AT3G20970 Projected from TAIR, homologous to LOC_Os05g06330 (LOC_Os05g06330).
ENODL9 GeneProduct tair.locus:AT3G20570 Projected from TAIR, homologous to LOC_Os06g46740 (PUP2).
Oryzain gamma Protease GeneProduct :LOC_Os09g27030
AT1G57720 GeneProduct tair.locus:AT1G57720 Projected from TAIR, homologous to LOC_Os02g12800 (EF-1-g).
eEF-1G
BZO2H4 GeneProduct tair.locus:AT3G54620 Projected from TAIR, homologous to LOC_Os07g08420 (RISBZ1).
Functionaly redundant and compensatory expression between RISBZI and RPBF. Double Knock-Down mutant (KD-RISBZ1/KD-RPBF) caused most expression change in OsLKR/SDH
UBP23 GeneProduct tair.locus:AT5G57990 Projected from TAIR, homologous to LOC_Os06g08530 (bip110).
Putative ubiquitin-specific protease 23, BRI1-KD interacting protein 110
SUT2 GeneProduct tair.locus:AT2G02860 Projected from TAIR, homologous to LOC_Os02g58080 (SUT4).
Flavin containing monooxygenase 3-like GeneProduct :LOC_Os09g37620 Serine/threonine protein kinase
Ghd7 GeneProduct :LOC_Os07g15770 yield potential
AT3G15670 GeneProduct tair.locus:AT3G15670 Projected from TAIR, homologous to LOC_Os01g50910 (Wsi18).
Interaction with TRAB1 and VP1 by orthology to H vulgare ABA and GA induced water stress + cold stress member of the group 3 Lea family Wsi18 promoter is active in the whole grain
PGI1 GeneProduct tair.locus:AT4G24620 Projected from TAIR, homologous to LOC_Os09g29070 (PGI-a).
Wx1 GeneProduct :LOC_Os06g04200 30% less pre-mRNA in du1 mutant line Granule-bound starch synthase expression diminished during grain filling at high temperatures
AT1G06890 GeneProduct tair.locus:AT1G06890 Projected from TAIR, homologous to LOC_Os05g07670 (GPT-A).
Assigned as GPT-A by Nemeth D and Hanumappa M (10/21/2010)
AP1 GeneProduct tair.locus:AT1G69120 Projected from TAIR, homologous to LOC_Os03g54160 (MADS 14).
Also called AGL10, RAP1B
ABI5 GeneProduct tair.locus:AT2G36270 Projected from TAIR, homologous to LOC_Os01g64000 (ABI5).
ATXDH1 GeneProduct tair.locus:AT4G34890 Projected from TAIR, homologous to LOC_Os03g31550 (AOXDH).
AT4G17100 GeneProduct tair.locus:AT4G17100 Projected from TAIR, homologous to LOC_Os04g45910 (Serine protease).
Os04g0542900,
AT2G36950 GeneProduct tair.locus:AT2G36950 Projected from TAIR, homologous to LOC_Os03g05750 (VP2-like).
RAR1 GeneProduct tair.locus:AT5G51700 Projected from TAIR, homologous to LOC_Os02g33180 (RAR1).
SUT1 GeneProduct :LOC_Os03g07480
AT1G55550 GeneProduct tair.locus:AT1G55550 Projected from TAIR, homologous to LOC_Os01g15540 (Flavin-containing monooxygenase).
CSN5A GeneProduct tair.locus:AT1G22920 Projected from TAIR, homologous to LOC_Os04g56070 (CSN5).
PROLM 24 GeneProduct :LOC_Os06g31070 16 kDa Prolamin
IMPA-2 GeneProduct tair.locus:AT4G16143 Projected from TAIR, homologous to LOC_Os01g14950 (Importin alpha-1a).
NLS RECEPTOR
APRL4 GeneProduct tair.locus:AT1G34780 Projected from TAIR, homologous to LOC_Os02g51850 (APRL3).
Disulfide Isomerase
Rac GeneProduct :LOC_Os01g12900
AT2G25220 GeneProduct tair.locus:AT2G25220 Projected from TAIR, homologous to LOC_Os02g08530 (LOC_Os02g08530).
Protein Kinase-UniProt ID
PAT1 GeneProduct tair.locus:AT5G17990 Projected from TAIR, homologous to LOC_Os03g03450 (Anthranilate Phosphoribosyltransferase).
ATAMY1 GeneProduct tair.locus:AT4G25000 Projected from TAIR, homologous to LOC_Os09g28420 (Amy3B/Amy3C).
STA1 GeneProduct tair.locus:AT4G03430 Projected from TAIR, homologous to LOC_Os10g35550 (Du1).
dull endosperm-1
Sci2 GeneProduct :LOC_Os01g42860
AT2G39300 GeneProduct tair.locus:AT2G39300 Projected from TAIR, homologous to LOC_Os03g20580 (Centromere protein).
PIP5K9 GeneProduct tair.locus:AT3G09920 Projected from TAIR, homologous to LOC_Os02g57660 (PIP5K).
Putative phosphatidylinositol-4-phosphate 5-kinase
BZO2H4 GeneProduct tair.locus:AT3G54620 Projected from TAIR, homologous to LOC_Os03g58250 (REB ).
Symbol assigned by Nemeth D and Hanumappa M (08/19/2010)
AT3G15670 GeneProduct tair.locus:AT3G15670 Projected from TAIR, homologous to LOC_Os05g46480 (Lea3).
Interaction with TRAB1 and VP1 by orthology to H vulgare ABA related
DPK4 GeneProduct :LOC_Os06g45300 Ser/thr/tyr kinase
CRP GeneProduct tair.locus:AT4G00450 Projected from TAIR, homologous to LOC_Os10g40260 (LOC_Os10g40260 ).
Luc7-like 2 GeneProduct :LOC_Os03g62640 Sarcoplasmic reticulum
Jasmonate-induced protein GeneProduct :LOC_Os12g09700 Histone H3 (Lys9) methyltransferase
EM6 GeneProduct tair.locus:AT2G40170 Projected from TAIR, homologous to LOC_Os05g28210 (OsEM).
SBEIIa GeneProduct :LOC_Os04g33460 expression diminished during grain filling at high temperatures
AT4G03500 GeneProduct tair.locus:AT4G03500 Projected from TAIR, homologous to LOC_Os09g17329 (Ankyrin-like protein).
Iron transporter
ATBETAFRUCT4 GeneProduct tair.locus:AT1G12240 Projected from TAIR, homologous to LOC_Os02g01590 (Vin 2).
BMY3 GeneProduct tair.locus:AT5G18670 Projected from TAIR, homologous to LOC_Os03g22790 (Bam 10).
FBA2 GeneProduct tair.locus:AT4G38970 Projected from TAIR, homologous to LOC_Os11g07020 (ALDP).
Aldolase
CRU1 GeneProduct tair.locus:AT5G44120 Projected from TAIR, homologous to LOC_Os01g55690 (GluA-1).
RCA GeneProduct tair.locus:AT2G39730 Projected from TAIR, homologous to LOC_Os11g47970 (RCAA1).
RuBisCO activase large isoform
PPDK GeneProduct tair.locus:AT4G15530 Projected from TAIR, homologous to LOC_Os05g33570 (PPDKB).
CPDK1, PPDKB
PSAD-1 GeneProduct tair.locus:AT4G02770 Projected from TAIR, homologous to LOC_Os08g44680 (PSI-D).
SSIV GeneProduct tair.locus:AT4G18240 Projected from TAIR, homologous to LOC_Os01g52250 (SSIVa).
Also called ALK
AT2G17550 GeneProduct tair.locus:AT2G17550 Projected from TAIR, homologous to LOC_Os03g03860 (LOC_Os03g03860).
Unknown-UniProt ID
PBZ1 GeneProduct :LOC_Os12g36880
AT1G47640 GeneProduct tair.locus:AT1G47640 Projected from TAIR, homologous to LOC_Os03g55730 (SSA2 ).
10 kDa prolamin precursor
AT3G29130 GeneProduct tair.locus:AT3G29130 Projected from TAIR, homologous to LOC_Os03g43910 ( LOC_Os03g43910).
MADS 5 GeneProduct :LOC_Os06g06750
GLN1;1 GeneProduct tair.locus:AT5G37600 Projected from TAIR, homologous to LOC_Os02g50240 (GLN1-1).
Glutamine synthetase cytosolic isozyme 1-1, also called RGS28 and GS1;1
MPK5 GeneProduct :LOC_Os03g17700 UniProt:MPK3, BIMK1, MAP3, MAPK2, MPK5
GCPE GeneProduct tair.locus:AT5G60600 Projected from TAIR, homologous to LOC_Os02g39160 (HDS1).
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1
SCL8 GeneProduct tair.locus:AT5G52510 Projected from TAIR, homologous to LOC_Os02g45760 (SCR-like).
Scarecrow transcriptional regulator-like protein
CYP76C2 GeneProduct tair.locus:AT2G45570 Projected from TAIR, homologous to LOC_Os10g08474 (CYP450 ).
AP2 transcription factor
TRAB1 GeneProduct :LOC_Os08g36790 Interaction with Wsi18 and Lea3 by orthology to H vulgare bZIP transcription factor TRAB1, ABA RESPONSIVE ELEMENT 1=ABA1
YSL15 GeneProduct :LOC_Os02g43410 YELLOW STRIPE LIKE 15
IREG2 GeneProduct tair.locus:AT5G03570 Projected from TAIR, homologous to LOC_Os06g36450 (ferroportin1).
LOC_Os03g55130 GeneProduct :LOC_Os03g55130
BMY2 GeneProduct tair.locus:AT5G45300 Projected from TAIR, homologous to LOC_Os02g03690 (Bam 9).
PSAK GeneProduct tair.locus:AT1G30380 Projected from TAIR, homologous to LOC_Os07g05480 (Photosystem I RC subunit ).
SSI1 GeneProduct tair.locus:AT5G24300 Projected from TAIR, homologous to LOC_Os06g06560 (SSI).
EXPB2 GeneProduct :LOC_Os10g40710
AT3G05500 GeneProduct tair.locus:AT3G05500 Projected from TAIR, homologous to LOC_Os07g47510 (Stress-related protein).
Bam 8 GeneProduct :LOC_Os01g13550
PLC2 GeneProduct tair.locus:AT3G08510 Projected from TAIR, homologous to LOC_Os07g49330 (Phospholipase C).
SUT5 GeneProduct :LOC_Os02g36700
At-A/N-InvE GeneProduct tair.locus:AT5G22510 Projected from TAIR, homologous to LOC_Os02g32730 (INV3).
Neutral/alkaline invertase 3 Assigned as NA-INV1 by Nemeth D and Hanumappa M (10/21/2010)
AT5G05010 GeneProduct tair.locus:AT5G05010 Projected from TAIR, homologous to LOC_Os01g61710 (Delta-COP).
Delta coatamer
SSII-2 GeneProduct :LOC_Os02g51070 Also called ALK
Terpene cyclases GeneProduct :LOC_Os04g27190
MCM2 GeneProduct tair.locus:AT1G44900 Projected from TAIR, homologous to LOC_Os11g29380 (MCM2).
RAB18 GeneProduct tair.locus:AT5G66400 Projected from TAIR, homologous to LOC_Os11g26790 (Rab21).
ABA related water stress + cold stress
TCH2 GeneProduct tair.locus:AT5G37770 Projected from TAIR, homologous to LOC_Os05g13580 (CML18).
GRF7 GeneProduct tair.locus:AT3G02520 Projected from TAIR, homologous to LOC_Os08g33370 (GF14c).
UGP GeneProduct tair.locus:AT3G03250 Projected from TAIR, homologous to LOC_Os09g38030 (UGP1
ATGSNOR1 GeneProduct tair.locus:AT5G43940 Projected from TAIR, homologous to LOC_Os02g57040 (FDH).
Alcohol dehydrogenase class 3; Also called FALDH, GSH-FDH (Glutathione-dependent formaldehyde dehydrogenase)
AT3G01490 GeneProduct tair.locus:AT3G01490 Projected from TAIR, homologous to LOC_Os05g50190 (LOC_Os05g50190).
Protein Kinase-UniProt ID
ELF9 GeneProduct tair.locus:AT5G16260 Projected from TAIR, homologous to LOC_Os04g41910 (LOC_Os04g41910).
AT5G53390 GeneProduct tair.locus:AT5G53390 Projected from TAIR, homologous to LOC_Os05g48260 (RIR 1b).
SSP5 GeneProduct tair.locus:AT5G11860 Projected from TAIR, homologous to LOC_Os07g10690 (CPL1).
Seed Shattering
FKF1 GeneProduct tair.locus:AT1G68050 Projected from TAIR, homologous to LOC_Os11g34460 (FBO10).
Adagio-like protein 3 Cytochrome P450
AT1G77060 GeneProduct tair.locus:AT1G77060 Projected from TAIR, homologous to LOC_Os12g08760 (OsCCP
JA cmtr GeneProduct :LOC_Os06g22440 Putative S-adenosyl-L-methionine Subtilisin N-terminal Region
ISA2 GeneProduct tair.locus:AT1G03310 Projected from TAIR, homologous to LOC_Os05g32710 (ISA2).
BMY9 GeneProduct tair.locus:AT4G00490 Projected from TAIR, homologous to LOC_Os09g39570 (Bam 6).
PROLM28 GeneProduct :LOC_Os12g16890 Prolamin precursor, protein also called PPROL 17
PUM8 GeneProduct tair.locus:AT1G22240 Projected from TAIR, homologous to LOC_Os12g31000 (Pumilio ).
Leucine rich repeat
ZIP10 GeneProduct tair.locus:AT1G31260 Projected from TAIR, homologous to LOC_Os03g46470 (IRT1).
ATOPT3 GeneProduct tair.locus:AT4G16370 Projected from TAIR, homologous to LOC_Os03g54000 (Oligopeptide transporter 3).
Isp4-like
AT5G49710 GeneProduct tair.locus:AT5G49710 Projected from TAIR, homologous to LOC_Os02g54080 (MADS-box IL).
AT4G32260 GeneProduct tair.locus:AT4G32260 Projected from TAIR, homologous to LOC_Os03g17070 (ATP synthase).
CRU1 GeneProduct tair.locus:AT5G44120 Projected from TAIR, homologous to LOC_Os02g15169 (GluB-1A).
UniProt ID: P14323
MLA10 GeneProduct :LOC_Os11g16470 Ankyrin repeat
RPK-TMK1 precursor GeneProduct :LOC_Os04g58910 receptor protein kinase TMK1 precursor
PI GeneProduct tair.locus:AT5G20240 Projected from TAIR, homologous to LOC_Os01g66030 (MADS 2).
AT1G67890 GeneProduct tair.locus:AT1G67890 Projected from TAIR, homologous to LOC_Os12g37570 (LOC_Os12g37570).
Protein Kinase-UniProt ID
DIP1 GeneProduct :LOC_Os05g34070
EBP89 GeneProduct :LOC_Os03g08460 Also called EREBP1
SUT4 GeneProduct tair.locus:AT1G09960 Projected from TAIR, homologous to LOC_Os12g44380 (SUT2).
CYCB1;2 GeneProduct tair.locus:AT5G06150 Projected from TAIR, homologous to LOC_Os01g59120 (CycB1;1).
Seed Shattering
AT2G35840 GeneProduct tair.locus:AT2G35840 Projected from TAIR, homologous to LOC_Os01g27880 (SPP1).
sucrose-phosphatase 1
AT4G24060 GeneProduct tair.locus:AT4G24060 Projected from TAIR, homologous to LOC_Os04g47990 (S-REP ).
UNE10 GeneProduct tair.locus:AT4G00050 Projected from TAIR, homologous to LOC_Os10g40740 (bhlh113).
basic/helix-loop-helix 113
APL1 GeneProduct :LOC_Os05g50380 ADP-glucose Pyrophosphorylase large subunit 1
CTR1-like GeneProduct :LOC_Os09g39320 Multitransmembrane protein
DREB1B GeneProduct :LOC_Os09g35010
RUBQ1 GeneProduct :LOC_Os02g06640 Also called Polyubiquitin 6 Also given LOC_Os05g42424 which is not complete
ALDH11A3 GeneProduct tair.locus:AT2G24270 Projected from TAIR, homologous to LOC_Os08g34210 (NADPH G-3-P dh).
AT1G27461 GeneProduct tair.locus:AT1G27461 Projected from TAIR, homologous to LOC_Os07g39700 (Sdr4).
AT1G76660 GeneProduct tair.locus:AT1G76660 Projected from TAIR, homologous to LOC_Os01g01390 (Ring Finger).
SS2 GeneProduct tair.locus:AT3G01180 Projected from TAIR, homologous to LOC_Os10g30156 (SSIIc).
Also called ALK
AT2G42130 GeneProduct tair.locus:AT2G42130 Projected from TAIR, homologous to LOC_Os04g57020 (LOC_Os04g57020).
PSBO2 GeneProduct tair.locus:AT3G50820 Projected from TAIR, homologous to LOC_Os01g31690 (PSII-OEP33).
No symbol in gramene so OEP33 was assigned. 33kDa oxygen evolving protein of photosystem II
LOC_Os04g53350 GeneProduct :LOC_Os04g53350 Cooper 31122 ID
CRINKLY4 GeneProduct :LOC_Os08g28710
RAG-1 GeneProduct :LOC_Os09g16260 RISBZ1 + RPBF activated the RAG-1 promoter greater than RPBF alone, though RISBZ1 did not independently affect promoter activity
CR4 GeneProduct tair.locus:AT3G59420 Projected from TAIR, homologous to LOC_Os03g43670 (CR4).
homology with Crinkly4
SSA1 GeneProduct :LOC_Os05g41970 26 kDa alpha globulin
APG2 GeneProduct tair.locus:AT2G01110 Projected from TAIR, homologous to LOC_Os01g31680 (TATC).
DPE1 GeneProduct tair.locus:AT5G64860 Projected from TAIR, homologous to LOC_Os07g43390 (DPE1).
LOC_Os02g53890 GeneProduct :LOC_Os02g53890

References

  1. Sequence and functional analyses of the rice gene homologous to the maize Vp1. Hattori T, Terada T, Hamasuna ST. Plant Mol Biol. 1994 Mar;24(5):805–10. PubMed Europe PMC Scholia
  2. Characterization of three rice basic/leucine zipper factors, including two inhibitors of EmBP-1 DNA binding activity. Nantel A, Quatrano RS. J Biol Chem. 1996 Dec 6;271(49):31296–305. PubMed Europe PMC Scholia
  3. 14-3-3 proteins are part of an abscisic acid-VIVIPAROUS1 (VP1) response complex in the Em promoter and interact with VP1 and EmBP1. Schultz TF, Medina J, Hill A, Quatrano RS. Plant Cell. 1998 May;10(5):837–47. PubMed Europe PMC Scholia
  4. RNA maturation of the rice SPK gene may involve trans-splicing. Kawasaki T, Okumura S, Kishimoto N, Shimada H, Higo K, Ichikawa N. Plant J. 1999 Jun;18(6):625–32. PubMed Europe PMC Scholia
  5. Hormonal cross-talk between auxin and ethylene differentially regulates the expression of two members of the 1-aminocyclopropane-1-carboxylate oxidase gene family in rice (Oryza sativa L.). Chae HS, Cho YG, Park MY, Lee MC, Eun MY, Kang BG, et al. Plant Cell Physiol. 2000 Mar;41(3):354–62. PubMed Europe PMC Scholia
  6. The cell cycle genes cycA1;1 and cdc2Os-3 are coordinately regulated by gibberellin in planta. Fabian T, Lorbiecke R, Umeda M, Sauter M. Planta. 2000 Aug;211(3):376–83. PubMed Europe PMC Scholia
  7. Rice SPK, a calmodulin-like domain protein kinase, is required for storage product accumulation during seed development: phosphorylation of sucrose synthase is a possible factor. Asano T, Kunieda N, Omura Y, Ibe H, Kawasaki T, Takano M, et al. Plant Cell. 2002 Mar;14(3):619–28. PubMed Europe PMC Scholia
  8. A network of rice genes associated with stress response and seed development. Cooper B, Clarke JD, Budworth P, Kreps J, Hutchison D, Park S, et al. Proc Natl Acad Sci U S A. 2003 Apr 15;100(8):4945–50. PubMed Europe PMC Scholia
  9. Interaction between proliferating cell nuclear antigen and JUN-activation-domain-binding protein 1 in the meristem of rice, Oryza sativa L. Yamamoto T, Kimura S, Mori Y, Uchiyama Y, Ishibashi T, Hashimoto J, et al. Planta. 2003 Jun;217(2):175–83. PubMed Europe PMC Scholia
  10. An interaction between a MYC protein and an EREBP protein is involved in transcriptional regulation of the rice Wx gene. Zhu Y, Cai XL, Wang ZY, Hong MM. J Biol Chem. 2003 Nov 28;278(48):47803–11. PubMed Europe PMC Scholia
  11. Characterization of Rad6 from a higher plant, rice (Oryza sativa L.) and its interaction with Sgt1, a subunit of the SCF ubiquitin ligase complex. Yamamoto T, Mori Y, Ishibashi T, Uchiyama Y, Sakaguchi N, Furukawa T, et al. Biochem Biophys Res Commun. 2004 Feb 6;314(2):434–9. PubMed Europe PMC Scholia
  12. A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells. Zhang ZL, Xie Z, Zou X, Casaretto J, Ho THD, Shen QJ. Plant Physiol. 2004 Apr;134(4):1500–13. PubMed Europe PMC Scholia
  13. Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRac1 in rice. Wong HL, Sakamoto T, Kawasaki T, Umemura K, Shimamoto K. Plant Physiol. 2004 Jul;135(3):1447–56. PubMed Europe PMC Scholia
  14. A comprehensive expression analysis of the starch synthase gene family in rice (Oryza sativa L.). Hirose T, Terao T. Planta. 2004 Nov;220(1):9–16. PubMed Europe PMC Scholia
  15. A rice antisense SPK transformant that lacks the accumulation of seed storage substances shows no correlation between sucrose concentration in phloem sap and demand for carbon sources in the sink organs. Shimada H, Koishihara H, Saito Y, Arashima Y, Furukawa T, Hayashi H. Plant Cell Physiol. 2004 Aug;45(8):1105–9. PubMed Europe PMC Scholia
  16. Molecular cloning and expression analysis of the cell-wall invertase gene family in rice (Oryza sativa L.). Cho JI, Lee SK, Ko S, Kim HK, Jun SH, Lee YH, et al. Plant Cell Rep. 2005 Jun;24(4):225–36. PubMed Europe PMC Scholia
  17. Interaction between proliferating cell nuclear antigen (PCNA) and a DnaJ induced by DNA damage. Yamamoto T, Mori Y, Ishibashi T, Uchiyama Y, Ueda T, Ando T, et al. J Plant Res. 2005 Apr;118(2):91–7. PubMed Europe PMC Scholia
  18. Identification of three shikimate kinase genes in rice: characterization of their differential expression during panicle development and of the enzymatic activities of the encoded proteins. Kasai K, Kanno T, Akita M, Ikejiri-Kanno Y, Wakasa K, Tozawa Y. Planta. 2005 Oct;222(3):438–47. PubMed Europe PMC Scholia
  19. Cytokinin oxidase regulates rice grain production. Ashikari M, Sakakibara H, Lin S, Yamamoto T, Takashi T, Nishimura A, et al. Science. 2005 Jul 29;309(5735):741–5. PubMed Europe PMC Scholia
  20. Proteomic analysis of rice embryo: an approach for investigating Galpha protein-regulated proteins. Komatsu S, Abbasi F, Kobori E, Fujisawa Y, Kato H, Iwasaki Y. Proteomics. 2005 Oct;5(15):3932–41. PubMed Europe PMC Scholia
  21. Expression profiling of genes involved in starch synthesis in sink and source organs of rice. Ohdan T, Francisco PB Jr, Sawada T, Hirose T, Terao T, Satoh H, et al. J Exp Bot. 2005 Dec;56(422):3229–44. PubMed Europe PMC Scholia
  22. Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress. Cao Y, Song F, Goodman RM, Zheng Z. J Plant Physiol. 2006 Nov;163(11):1167–78. PubMed Europe PMC Scholia
  23. Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells. Xie Z, Zhang ZL, Zou X, Yang G, Komatsu S, Shen QJ. Plant J. 2006 Apr;46(2):231–42. PubMed Europe PMC Scholia
  24. Effects of cold-treatment on protein synthesis and mRNA levels in rice leaves. Hahn M, Walbot V. Plant Physiol. 1989 Nov;91(3):930–8. PubMed Europe PMC Scholia
  25. OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component. Mao C, Wang S, Jia Q, Wu P. Plant Mol Biol. 2006 May;61(1–2):141–52. PubMed Europe PMC Scholia
  26. Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes. Yamamoto MP, Onodera Y, Touno SM, Takaiwa F. Plant Physiol. 2006 Aug;141(4):1694–707. PubMed Europe PMC Scholia
  27. Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis. Li X, Duan X, Jiang H, Sun Y, Tang Y, Yuan Z, et al. Plant Physiol. 2006 Aug;141(4):1167–84. PubMed Europe PMC Scholia
  28. Structural and enzymatic characterization of the isoamylase1 homo-oligomer and the isoamylase1-isoamylase2 hetero-oligomer from rice endosperm. Utsumi Y, Nakamura Y. Planta. 2006 Dec;225(1):75–87. PubMed Europe PMC Scholia
  29. Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.). Ryoo N, Yu C, Park CS, Baik MY, Park IM, Cho MH, et al. Plant Cell Rep. 2007 Jul;26(7):1083–95. PubMed Europe PMC Scholia
  30. OsMTN encodes a 5’-methylthioadenosine nucleosidase that is up-regulated during submergence-induced ethylene synthesis in rice (Oryza sativa L.). Rzewuski G, Cornell KA, Rooney L, Bürstenbinder K, Wirtz M, Hell R, et al. J Exp Bot. 2007;58(6):1505–14. PubMed Europe PMC Scholia
  31. Characterization of a lipoate-protein ligase A gene of rice (Oryza sativa L.). Kang SG, Jeong HK, Lee E, Natarajan S. Gene. 2007 May 15;393(1–2):53–61. PubMed Europe PMC Scholia
  32. Comprehensive expression profiling of rice grain filling-related genes under high temperature using DNA microarray. Yamakawa H, Hirose T, Kuroda M, Yamaguchi T. Plant Physiol. 2007 May;144(1):258–77. PubMed Europe PMC Scholia
  33. Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.). Lee SK, Hwang SK, Han M, Eom JS, Kang HG, Han Y, et al. Plant Mol Biol. 2007 Nov;65(4):531–46. PubMed Europe PMC Scholia
  34. Over-expression of a LEA gene in rice improves drought resistance under the field conditions. Xiao B, Huang Y, Tang N, Xiong L. Theor Appl Genet. 2007 Jun;115(1):35–46. PubMed Europe PMC Scholia
  35. The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions. Ogo Y, Itai RN, Nakanishi H, Kobayashi T, Takahashi M, Mori S, et al. Plant J. 2007 Aug;51(3):366–77. PubMed Europe PMC Scholia
  36. Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.). Zeng D, Yan M, Wang Y, Liu X, Qian Q, Li J. Plant Mol Biol. 2007 Nov;65(4):501–9. PubMed Europe PMC Scholia
  37. Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice. Nakashima K, Tran LSP, Van Nguyen D, Fujita M, Maruyama K, Todaka D, et al. Plant J. 2007 Aug;51(4):617–30. PubMed Europe PMC Scholia
  38. Characterization of alternative splicing products of bZIP transcription factors OsABI5. Zou M, Guan Y, Ren H, Zhang F, Chen F. Biochem Biophys Res Commun. 2007 Aug 24;360(2):307–13. PubMed Europe PMC Scholia
  39. MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. Arora R, Agarwal P, Ray S, Singh AK, Singh VP, Tyagi AK, et al. BMC Genomics. 2007 Jul 18;8:242. PubMed Europe PMC Scholia
  40. The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants. Kobayashi T, Ogo Y, Itai RN, Nakanishi H, Takahashi M, Mori S, et al. Proc Natl Acad Sci U S A. 2007 Nov 27;104(48):19150–5. PubMed Europe PMC Scholia
  41. RAR1 and HSP90 form a complex with Rac/Rop GTPase and function in innate-immune responses in rice. Thao NP, Chen L, Nakashima A, Hara S ichiro, Umemura K, Takahashi A, et al. Plant Cell. 2007 Dec;19(12):4035–45. PubMed Europe PMC Scholia
  42. OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance. Wang Y, Gao M, Li Q, Wang L, Wang J, Jeon JS, et al. Mol Plant Microbe Interact. 2008 Mar;21(3):294–303. PubMed Europe PMC Scholia
  43. A novel NAC transcription factor, IDEF2, that recognizes the iron deficiency-responsive element 2 regulates the genes involved in iron homeostasis in plants. Ogo Y, Kobayashi T, Nakanishi Itai R, Nakanishi H, Kakei Y, Takahashi M, et al. J Biol Chem. 2008 May 9;283(19):13407–17. PubMed Europe PMC Scholia
  44. Abscisic acid regulates gene expression in cortical fiber cells and silica cells of rice shoots. Shobbar ZS, Oane R, Gamuyao R, De Palma J, Malboobi MA, Karimzadeh G, et al. New Phytol. 2008;178(1):68–79. PubMed Europe PMC Scholia
  45. Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice. Xue W, Xing Y, Weng X, Zhao Y, Tang W, Wang L, et al. Nat Genet. 2008 Jun;40(6):761–7. PubMed Europe PMC Scholia
  46. Badh2, encoding betaine aldehyde dehydrogenase, inhibits the biosynthesis of 2-acetyl-1-pyrroline, a major component in rice fragrance. Chen S, Yang Y, Shi W, Ji Q, He F, Zhang Z, et al. Plant Cell. 2008 Jul;20(7):1850–61. PubMed Europe PMC Scholia
  47. Cell-wall invertases from rice are differentially expressed in Caryopsis during the grain filling stage. Wang YQ, Wei XL, Xu HL, Chai CL, Meng K, Zhai HL, et al. J Integr Plant Biol. 2008 Apr;50(4):466–74. PubMed Europe PMC Scholia
  48. RACK1 functions in rice innate immunity by interacting with the Rac1 immune complex. Nakashima A, Chen L, Thao NP, Fujiwara M, Wong HL, Kuwano M, et al. Plant Cell. 2008 Aug;20(8):2265–79. PubMed Europe PMC Scholia
  49. Identification and characterization of a rice MCM2 homologue required for DNA replication. Cho JH, Kim HB, Kim HS, Choi SB. BMB Rep. 2008 Aug 31;41(8):581–6. PubMed Europe PMC Scholia
  50. Control of rice grain-filling and yield by a gene with a potential signature of domestication. Wang E, Wang J, Zhu X, Hao W, Wang L, Li Q, et al. Nat Genet. 2008 Nov;40(11):1370–4. PubMed Europe PMC Scholia
  51. Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants. Umemura K, Satou J, Iwata M, Uozumi N, Koga J, Kawano T, et al. Plant J. 2009 Feb;57(3):463–72. PubMed Europe PMC Scholia
  52. RNAi-directed downregulation of OsBADH2 results in aroma (2-acetyl-1-pyrroline) production in rice (Oryza sativa L.). Niu X, Tang W, Huang W, Ren G, Wang Q, Luo D, et al. BMC Plant Biol. 2008 Oct 8;8:100. PubMed Europe PMC Scholia
  53. Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight. Weng J, Gu S, Wan X, Gao H, Guo T, Su N, et al. Cell Res. 2008 Dec;18(12):1199–209. PubMed Europe PMC Scholia
  54. Rice aldehyde dehydrogenase7 is needed for seed maturation and viability. Shin JH, Kim SR, An G. Plant Physiol. 2009 Feb;149(2):905–15. PubMed Europe PMC Scholia
  55. Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis. Song Y, You J, Xiong L. Plant Mol Biol. 2009 Jun;70(3):297–309. PubMed Europe PMC Scholia
  56. Spatiotemporal profiling of starch biosynthesis and degradation in the developing barley grain. Radchuk VV, Borisjuk L, Sreenivasulu N, Merx K, Mock HP, Rolletschek H, et al. Plant Physiol. 2009 May;150(1):190–204. PubMed Europe PMC Scholia
  57. Overexpression of the transcription factor AP37 in rice improves grain yield under drought conditions. Oh SJ, Kim YS, Kwon CW, Park HK, Jeong JS, Kim JK. Plant Physiol. 2009 Jul;150(3):1368–79. PubMed Europe PMC Scholia
  58. Compensation and interaction between RISBZ1 and RPBF during grain filling in rice. Kawakatsu T, Yamamoto MP, Touno SM, Yasuda H, Takaiwa F. Plant J. 2009 Sep;59(6):908–20. PubMed Europe PMC Scholia
  59. Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice. Jain M, Khurana JP. FEBS J. 2009 Jun;276(11):3148–62. PubMed Europe PMC Scholia
  60. Evolutionary history of GS3, a gene conferring grain length in rice. Takano-Kai N, Jiang H, Kubo T, Sweeney M, Matsumoto T, Kanamori H, et al. Genetics. 2009 Aug;182(4):1323–34. PubMed Europe PMC Scholia
  61. Comparison of the starch synthesis genes between maize and rice: copies, chromosome location and expression divergence. Yan HB, Pan XX, Jiang HW, Wu GJ. Theor Appl Genet. 2009 Sep;119(5):815–25. PubMed Europe PMC Scholia
  62. Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling. Bi YM, Kant S, Clarke J, Gidda S, Ming F, Xu J, et al. Plant Cell Environ. 2009 Dec;32(12):1749–60. PubMed Europe PMC Scholia
  63. The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes. Kobayashi T, Itai RN, Ogo Y, Kakei Y, Nakanishi H, Takahashi M, et al. Plant J. 2009 Dec;60(6):948–61. PubMed Europe PMC Scholia
  64. Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of the abscission layer and seed shattering in rice. Ji H, Kim SR, Kim YH, Kim H, Eun MY, Jin ID, et al. Plant J. 2010 Jan;61(1):96–106. PubMed Europe PMC Scholia
  65. The expression of Orysa;CycB1;1 is essential for endosperm formation and causes embryo enlargement in rice. Guo J, Wang F, Song J, Sun W, Zhang XS. Planta. 2010 Jan;231(2):293–303. PubMed Europe PMC Scholia
  66. The syncytium-specific expression of the Orysa;KRP3 CDK inhibitor: implication of its involvement in the cell cycle control in the rice (Oryza sativa L.) syncytial endosperm. Mizutani M, Naganuma T, Tsutsumi K ichi, Saitoh Y. J Exp Bot. 2010 Mar;61(3):791–8. PubMed Europe PMC Scholia
  67. Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice. Sugimoto K, Takeuchi Y, Ebana K, Miyao A, Hirochika H, Hara N, et al. Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):5792–7. PubMed Europe PMC Scholia
  68. Characterization of the reactions of starch branching enzymes from rice endosperm. Nakamura Y, Utsumi Y, Sawada T, Aihara S, Utsumi C, Yoshida M, et al. Plant Cell Physiol. 2010 May;51(5):776–94. PubMed Europe PMC Scholia
  69. Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions. Jeong JS, Kim YS, Baek KH, Jung H, Ha SH, Do Choi Y, et al. Plant Physiol. 2010 May;153(1):185–97. PubMed Europe PMC Scholia
  70. Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication. Wang E, Xu X, Zhang L, Zhang H, Lin L, Wang Q, et al. BMC Evol Biol. 2010 Apr 23;10:108. PubMed Europe PMC Scholia
  71. Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice. Sun SJ, Guo SQ, Yang X, Bao YM, Tang HJ, Sun H, et al. J Exp Bot. 2010 Jun;61(10):2807–18. PubMed Europe PMC Scholia
  72. Activation of a Rac GTPase by the NLR family disease resistance protein Pit plays a critical role in rice innate immunity. Kawano Y, Akamatsu A, Hayashi K, Housen Y, Okuda J, Yao A, et al. Cell Host Microbe. 2010 May 20;7(5):362–75. PubMed Europe PMC Scholia
  73. Analysis of the Wsi18, a stress-inducible promoter that is active in the whole grain of transgenic rice. Yi N, Oh SJ, Kim YS, Jang HJ, Park SH, Jeong JS, et al. Transgenic Res. 2011 Feb;20(1):153–63. PubMed Europe PMC Scholia
  74. Functional analysis of six drought-inducible promoters in transgenic rice plants throughout all stages of plant growth. Yi N, Kim YS, Jeong MH, Oh SJ, Jeong JS, Park SH, et al. Planta. 2010 Aug;232(3):743–54. PubMed Europe PMC Scholia
  75. The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Takasaki H, Maruyama K, Kidokoro S, Ito Y, Fujita Y, Shinozaki K, et al. Mol Genet Genomics. 2010 Sep;284(3):173–83. PubMed Europe PMC Scholia
  76. Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator. Fu FF, Xue HW. Plant Physiol. 2010 Oct;154(2):927–38. PubMed Europe PMC Scholia
  77. Molecular evolution of the endosperm starch synthesis pathway genes in rice (Oryza sativa L.) and its wild ancestor, O. rufipogon L. Yu G, Olsen KM, Schaal BA. Mol Biol Evol. 2011 Jan;28(1):659–71. PubMed Europe PMC Scholia
  78. A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality. She KC, Kusano H, Koizumi K, Yamakawa H, Hakata M, Imamura T, et al. Plant Cell. 2010 Oct;22(10):3280–94. PubMed Europe PMC Scholia
  79. Linking differential domain functions of the GS3 protein to natural variation of grain size in rice. Mao H, Sun S, Yao J, Wang C, Yu S, Xu C, et al. Proc Natl Acad Sci U S A. 2010 Nov 9;107(45):19579–84. PubMed Europe PMC Scholia
  80. Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain. Kawakatsu T, Takaiwa F. Plant Cell Physiol. 2010 Dec;51(12):1964–74. PubMed Europe PMC Scholia
  81. WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networks. Hanumappa M, Preece J, Elser J, Nemeth D, Bono G, Wu K, et al. Rice (N Y). 2013 May 29;6(1):14. PubMed Europe PMC Scholia