Eukaryotic transcription initiation (WP1066)

Bos taurus

In eukaryotes, RNA polymerase, and therefore the initiation of transcription, requires the presence of a core promoter sequence in the DNA. RNA polymerase is able to bind to core promoters in the presence of various specific transcription factors. The most common type of core promoter in eukaryotes is a short DNA sequence known as a TATA box. The TATA box, as a core promoter, is the binding site for a transcription factor known as TATA binding protein (TBP), which is itself a subunit of another transcription factor, called Transcription Factor II D (TFIID). After TFIID binds to the TATA box via the TBP, five more transcription factors and RNA polymerase combine around the TATA box in a series of stages to form a preinitiation complex. One transcription factor, DNA helicase, has helicase activity and so is involved in the separating of opposing strands of double-stranded DNA to provide access to a single-stranded DNA template. However, only a low, or basal, rate of transcription is driven by the preinitiation complex alone. Other proteins known as activators and repressors, along with any associated coactivators or corepressors, are responsible for modulating transcription rate. Source: [[wikipedia:Transcription_(genetics)|Wikipedia]]

Authors

Thomas Kelder , Christine Chichester , Martina Summer-Kutmon , and Eric Weitz

Activity

last edited

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Organisms

Bos taurus

Communities

Annotations

Pathway Ontology

RNA polymerase III transcription initiation pathway RNA polymerase II transcription initiation pathway RNA polymerase I transcription initiation pathway

Participants

Label Type Compact URI Comment
TBP GeneProduct ensembl:ENSBTAG00000002545 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6908
GTF2B GeneProduct ensembl:ENSBTAG00000000504 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2959
TAF5 GeneProduct ensembl:ENSBTAG00000009709 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6877
TAF6 GeneProduct ensembl:ENSBTAG00000030966 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6878
TAF7 GeneProduct ensembl:ENSBTAG00000011945 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6879
AK6 GeneProduct ensembl:ENSBTAG00000046192 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6880
ILK GeneProduct ensembl:ENSBTAG00000000696 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:3611
TAF12 GeneProduct ensembl:ENSBTAG00000026660 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6883
TAF13 GeneProduct ensembl:ENSBTAG00000031656 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6884
GTF2E1 GeneProduct ensembl:ENSBTAG00000016848 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2960
GTF2A2 GeneProduct ensembl:ENSBTAG00000010298 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2958
GTF2F2 GeneProduct ensembl:ENSBTAG00000034495 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2963
GTF2E2 GeneProduct ensembl:ENSBTAG00000012691 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2961
CDK7 GeneProduct ensembl:ENSBTAG00000011046 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1022
GTF2H1 GeneProduct ensembl:ENSBTAG00000005160 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2965
GTF2H2 GeneProduct ensembl:ENSBTAG00000027983 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2966
GTF2H4 GeneProduct ensembl:ENSBTAG00000046757 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2968
ERCC3 GeneProduct ensembl:ENSBTAG00000020777 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2071
ERCC2 GeneProduct ensembl:ENSBTAG00000002072 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2068
POLR1B GeneProduct ensembl:ENSBTAG00000014166 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:84172
POLR3B GeneProduct ensembl:ENSBTAG00000004781 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:55703
POLR2A GeneProduct ensembl:ENSBTAG00000046765 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5430
POLR2F GeneProduct ensembl:ENSBTAG00000004820 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5435
POLR2C GeneProduct ensembl:ENSBTAG00000001856 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5432
POLR2E GeneProduct ensembl:ENSBTAG00000020776 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5434
POLR2K GeneProduct ensembl:ENSBTAG00000022539 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5440
POLR3D GeneProduct ensembl:ENSBTAG00000010036 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:661
POLR3E GeneProduct ensembl:ENSBTAG00000018044 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:55718
POLR3H GeneProduct ensembl:ENSBTAG00000005311 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:171568
POLR3K GeneProduct ensembl:ENSBTAG00000019803 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:51728
POLR1A GeneProduct ensembl:ENSBTAG00000006481 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:25885
POLR2I GeneProduct ensembl:ENSBTAG00000015002 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5438
POLR2G GeneProduct ensembl:ENSBTAG00000009483 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5436
POLR2H GeneProduct ensembl:ENSBTAG00000040199 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5437
POLR2B GeneProduct ensembl:ENSBTAG00000019366 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5431
CCNH GeneProduct ensembl:ENSBTAG00000009566 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:902
MNAT1 GeneProduct ensembl:ENSBTAG00000030801 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:4331
GTF2H3 GeneProduct ensembl:ENSBTAG00000007270 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2967
POLR1E GeneProduct ensembl:ENSBTAG00000012243 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:64425
POLR1D GeneProduct ensembl:ENSBTAG00000008642 HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:51082

References

  1. Regulation of gene expression by TBP-associated proteins. Lee TI, Young RA. Genes Dev. 1998 May 15;12(10):1398–408. PubMed Europe PMC Scholia
  2. Orchestrated response: a symphony of transcription factors for gene control. Lemon B, Tjian R. Genes Dev. 2000 Oct 15;14(20):2551–69. PubMed Europe PMC Scholia