lipidmaps-wp-curation
WikiPathways WP4725
- WikiPathways: WP4725 (classic)
- Species: Homo sapiens
- Scholia: WP4725
- WPRDF file: wp/Human/WP4725.ttl
- GPMLRDF file: wp/gpml/Human/WP4725.ttl
- SBML file: sbml/WP4725.sbml (SVG) (conversion notes)
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- DataNodesTests
- dataNodesWithoutIdentifier: .x we found 1 problem(s):
- unknownTypes_knownDatasource: .. all OK!
- unknownTypes: .. all OK!
- unknownTypes_Reactome: .. all OK!
- otherDataSource: .. all OK!
- EnsemblTests: all 4 tests OK!
- GeneTests
- entrezGeneIdentifiersNotNumber: .. all OK!
- affyProbeIdentifiersNotCorrect: .. all OK!
- outdatedIdentifiers: …. all OK!
- nonNumericHGNCAccessionNumbers: .. all OK!
- genesWithoutEnsemblMapping: .x we found 1 problem(s):
- GeneralTests: all 15 tests OK!
- HMDBMetabolitesTests: all 1 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests: all 9 tests OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests
- retiredIdentifiers: .. all OK!
- onlyLIPIDMAPS: .x we found 1 problem(s):
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 14 tests OK!
- OudatedDataSourcesTests: all 9 tests OK!
- PathwayTests: all 11 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- WikidataTests: all 14 tests OK!
Summary
- Number of test classes: 21
- Number of tests: 120
- Number of assertions: 241
- Number of fails: 3
Fails
Data nodes without an identifier
The following DataNodes have no identifier: 2
- http://classic.wikipathways.org/instance/WP4725_r139832 http://rdf.wikipathways.org/Pathway/WP4725_rr139832/DataNode/b12b3 (CoA(26:1))
- http://classic.wikipathways.org/instance/WP4725_r139832 http://rdf.wikipathways.org/Pathway/WP4725_rr139832/DataNode/b6b95 (CoA(26:1))
More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier
Genes with identifier but no Ensembl identifier mapping
The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1
http://classic.wikipathways.org/instance/WP4725_rr139832 GBA3 with datasource UniProtKB
More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping
Only LIPID MAPS identifiers
Expected a LIPID MAPS identifier, but found other identifiers: 10
http://classic.wikipathways.org/instance/WP4725_rr139832 Ethanolamine-phosphate has 1015 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_rr139832 CoA(24:0) has 24305-30-4 from CAS but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_rr139832 CoA(22:0) has 24330-89-0 from CAS but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_rr139832 Serine has 5951 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_rr139832 CoA(24:1) has 88362-35-0 from CAS but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_rr139832 CoA(26:0) has 99313-57-2 from CAS but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_rr139832 H₂O has CHEBI:15377 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_rr139832 CoA(20:0) has CHEBI:15527 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_rr139832 CoA(18:0) has CHEBI:15541 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4725_rr139832 ADP has CHEBI:456216 from ChEBI but expected a LIPID MAPS identifier
More details at https://www.wikipathways.org/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS