lipidmaps-wp-curation

WikiPathways WP4688

• WikiPathways: WP4688 (classic)
• Species: Homo sapiens
• Scholia: WP4688
• WPRDF file: wp/Human/WP4688.ttl
• GPMLRDF file: wp/gpml/Human/WP4688.ttl
• SBML file: sbml/WP4688.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 9 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests
  • retiredIdentifiers: .. all OK!
  • onlyLIPIDMAPS: .x we found 1 problem(s):
    • Expected a LIPID MAPS identifier, but found other identifiers: 25
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 9 tests OK!
• PathwayTests: all 11 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 14 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 1

Fails

Only LIPID MAPS identifiers

Expected a LIPID MAPS identifier, but found other identifiers: 25

http://classic.wikipathways.org/instance/WP4688_rr139704 pyruvate has CHEBI:15361 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 H₂O has CHEBI:15377 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 H+ has CHEBI:15378 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 Methylene-THF has CHEBI:15636 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 NAD+ has CHEBI:15846 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 2-Ketoglutarate has CHEBI:16810 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 ceramides has CHEBI:17761 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 3-Phosphohydroxypyruvate has CHEBI:18110 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 Phosphatidylserine has CHEBI:18303 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 PLP has CHEBI:18405 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 Mg2+ has CHEBI:18420 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 dUMP has CHEBI:246422 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 sphingolipids has CHEBI:26739 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 D-Glyceraldehyde 3-phosphate has CHEBI:29052 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 glutamate has CHEBI:29985 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 L-serine has CHEBI:33384 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 D-serine has CHEBI:35247 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 Pi has CHEBI:43474 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 Glycine has CHEBI:57305 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 DHF has CHEBI:57451 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 THF has CHEBI:57453 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 3-Phosphoserine has CHEBI:57524 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 NADH has CHEBI:57945 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 (2R)-3-phosphoglycerate has CHEBI:58272 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4688_rr139704 dTMP has CHEBI:63528 from ChEBI but expected a LIPID MAPS identifier

More details at https://www.wikipathways.org/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS