lipidmaps-wp-curation

WikiPathways WP38

• WikiPathways: WP38 (classic)
• Species: Caenorhabditis elegans
• WPRDF file: wp/Human/WP38.ttl
• GPMLRDF file: wp/gpml/Human/WP38.ttl
• SBML file: sbml/WP38.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 9 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests
  • retiredIdentifiers: .. all OK!
  • onlyLIPIDMAPS: .x we found 1 problem(s):
    • Expected a LIPID MAPS identifier, but found other identifiers: 7
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 9 tests OK!
• PathwayTests: all 11 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 14 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 1

Fails

Only LIPID MAPS identifiers

Expected a LIPID MAPS identifier, but found other identifiers: 7

http://classic.wikipathways.org/instance/WP38_rr125346 citrate has CHEBI:133748 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP38_rr125346 pyruvate has CHEBI:15361 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP38_rr125346 Palmitate has CHEBI:15756 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP38_rr125346 oxaloacetate has CHEBI:16452 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP38_rr125346 3-ketoacyl-CoA has CHEBI:57347 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP38_rr125346 Malonyl-CoA has HMDB0001175 from HMDB but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP38_rr125346 Acetyl-CoA has HMDB0001206 from HMDB but expected a LIPID MAPS identifier

More details at https://www.wikipathways.org/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS