Fatty Acid Beta Oxidation (Rattus norvegicus)

From WikiPathways

Revision as of 15:04, 26 April 2018 by AdoBioInfo (Talk | contribs)
(diff) ←Older revision | Current revision (diff) | Newer revision→ (diff)
Jump to: navigation, search
See TCA Cycle pathwayFatty AcidSee Glycolysis pathwaySee TCA Cycle pathwaySee TCA Cycle pathwaySee TCA Cycle pathwaySee TCA Cycle pathwayUnsaturated fatty acidsSaturated fatty acidsSee TCA Cycle pathwayLipasesSee TCA Cycle pathwayHadhbPnpla2Acsl1AcadsHadhcis,cis-3,6-Dodecadienoyl-CoATetradecanoyl-CoAHadhbHadhb3-oxopalmitoyl-CoAHadhbGcdhAcsl3HadhaAcsl5HadhHadhbGlutaric acidAcetyl-CoAHadhaDciMyristic acidCpt1bAcadlCpt1atrans-2-Hexenoyl-CoACrotonoyl-CoAHadh(2E)-Octenoyl-CoADldEchs1GkL-glycerol-3-phosphateAcadlHadhbEchs1Dci(S)-3-Hydroxytetradecanoyl-CoADecr1Cpt2Acetyl-CoA(S)-Hydroxyhexanoyl-CoAButanoyl-CoAEchs1Glyceraldehyde-3-PhosphateHadhAcetyl-CoAHadhaHadhaAcetyl-CoA3-oxotetradecanoyl-CoA(S)-3-Hydroxydodecanoyl-CoAAcadvlAcadlHexanoyl-CoAGlycerolSlc25a202,4-Decadienoyl-CoAEchs1HadhbHadhbHadhaGk2LipfLipc(S)-Hydroxyoctanoyl-CoAOctanoyl-CoAAcetyl-CoA3-Oxododecanoyl-CoAGlutaryl-CoATPI1Palmitic acidHadhbAcadmEchs1HadhaHadhaChkbHadhaHadhaHadhbOleic acidHadhaLinoleic acid(2E)-Dodecenoyl-CoAHadhbDihydroxyacetone phosphateArachidic acid3-Oxohexanoyl-CoAAcetyl-CoAAcadmtrans,cis-Lauro-2,6-dienoyl-CoAAcadmHadhHadha(S)-Hydroxydecanoyl-CoADecanoyl-CoA AcadsAcss2Arachidonic acidLipeLinoleoyl-CoAAcetoacetyl-CoAAcsl4HadhbHadha(S)-3-Hydroxyhexadecanoyl-CoAMyristoleic acidPalmitoleic acid(2E)-Decenoyl-CoAAcetyl-CoA4-cis-Decenoyl-CoAAcyl-CoACratHadhbPalmityl-CoAtrans-3-Decenoyl-CoA3-Oxo-octanoyl-CoALplAcat13-Hydroxybutyryl-CoAHadhaAcsl6Acetyl-CoA(2E)-Tetradecenoyl-CoAAcetyl-CoAGpd2TriacylglycerolAcadlLauroyl-CoAStearic acid3-oxocanoyl-CoATrans-Hexadecanoyl-CoA


Description

Complete fatty acid beta-oxidation pathway for saturated and unsaturated fatty acids, developed and curated internally by BiGCaT Bioinformatics. This pathway was previously split into three parts plus a meta file for statistics. If you still have these you can replace all four with this single pathway.

Comments

HomologyConvert 
This pathway was inferred from Homo sapiens pathway WP143(r20983) with a 80% conversion rate.

Quality Tags

Ontology Terms

 

Bibliography

No bibliography


History

View all...
CompareRevisionActionTimeUserComment
97044view15:04, 26 April 2018AdoBioInfoConnected ONE line. I'm such a good person. #makingtheworldabetterplace
93220view14:18, 4 August 2017DeSlChanged ID of 3-Oxododexanoyl-CoA to more stereospecific one.
79801view16:20, 16 April 2015Mkutmonfixed unconnected lines
70701view19:19, 28 August 2013EgonwConverted a label into a DataNode and added a Chemspider ID.
68414view17:19, 5 July 2013EgonwRemoved HMDB as data source where no identifier was given, and added a ChEBI identifier.
67228view10:23, 26 June 2013Christine ChichesterOntology Term : 'fatty acid beta degradation pathway' added !
62191view20:42, 25 April 2013Cizarmyristoyl was wrongly spelled and was not a primary name. changed to Tetradecanoyl-CoA
60547view13:29, 21 March 2013Cizarannotated crotonoyl-CoA
60483view13:28, 20 March 2013Cizarprimary names and annotated metabolite
60482view13:21, 20 March 2013Cizarchanged primary name (S)-Hydroxyoctanoyl-CoA
60481view13:16, 20 March 2013Cizarannotated Acetyl-CoA
60480view13:12, 20 March 2013CizarAnnotated Acetoacetyl-CoA
60479view12:56, 20 March 2013Cizarannotated glutaryl-CoA
60478view12:49, 20 March 2013Cizarchanged Trans-Dec-2-enoyl-CoA and (S)-3-hydroxydecanoyl-CoA
60477view12:31, 20 March 2013CizarRestored last few changes
60476view12:16, 20 March 2013Cizarchanged Trans-Dec-2-enoyl-CoA to Trans-octadec-2-enoyl-CoA
60475view12:13, 20 March 2013Cizarchanged 3-oxocanoyl-CoA to 3-oxooctadecanoyl-CoA and (s)-3-hydroxydecanoyl-CoA to (s)-3-hydroxyoctadecanoyl-CoA
60472view12:01, 20 March 2013Cizaradded 3-Oxocanoyl-CoA to 3-Oxododecanoyl-CoA
60471view11:36, 20 March 2013CizarPeriodical save, work in progress
60470view11:26, 20 March 2013Cizaradded Acetyl-CoA
60469view11:25, 20 March 2013Cizar(S)-3-Hydroxydodecanoyl-CoA
60468view11:15, 20 March 2013Cizaradded Triacylglycerol
60467view11:04, 20 March 2013CizarAdded metabolite annotation
60195view13:07, 14 March 2013SusanAdd meta ids
60186view09:20, 14 March 2013SusanAdd meta ids
60185view09:09, 14 March 2013SusanAdd meta id
60150view17:13, 13 March 2013SusanAdding meta ids
60147view16:49, 13 March 2013SusanAdding metabolite IDs
60146view16:27, 13 March 2013SusanPeriodical save, work in progress
60145view16:15, 13 March 2013SusanPeriodical save, work in progress
59684view21:06, 5 March 2013SusanPeriodical save, work in progress
41765view02:41, 2 March 2011MaintBotRemoved redundant pathway information and comments
34133view19:30, 9 December 2009MaintBotAutomatic update of empty xrefs
31903view12:47, 14 August 2009MaintBotFixed group labels
31002view01:01, 30 July 2009MaintBotNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
(2E)-Decenoyl-CoAMetaboliteHMDB03948 (HMDB)
(2E)-Dodecenoyl-CoAMetaboliteHMDB03712 (HMDB)
(2E)-Octenoyl-CoAMetaboliteHMDB03949 (HMDB)
(2E)-Tetradecenoyl-CoAMetaboliteHMDB03946 (HMDB)
(S)-3-Hydroxydodecanoyl-CoAMetaboliteHMDB03936 (HMDB)
(S)-3-Hydroxyhexadecanoyl-CoAMetaboliteHMDB03932 (HMDB)
(S)-3-Hydroxytetradecanoyl-CoAMetaboliteHMDB03934 (HMDB)
(S)-Hydroxydecanoyl-CoAMetaboliteHMDB03938 (HMDB)
(S)-Hydroxyhexanoyl-CoAMetaboliteHMDB03942 (HMDB)
(S)-Hydroxyoctanoyl-CoAMetaboliteHMDB03940 (HMDB)
2,4-Decadienoyl-CoAMetaboliteHMDB01168 (HMDB)
3-Hydroxybutyryl-CoAMetaboliteHMDB01166 (HMDB)
3-Oxo-octanoyl-CoAMetabolite11966162 (PubChem-compound)
3-Oxododecanoyl-CoAMetaboliteHMDB03937 (HMDB)
3-Oxohexanoyl-CoAMetaboliteHMDB03943 (HMDB)
3-oxopalmitoyl-CoAMetaboliteHMDB06402 (HMDB)
3-oxotetradecanoyl-CoAMetaboliteHMDB03935 (HMDB)
4-cis-Decenoyl-CoAMetaboliteHMDB02145 (HMDB)
AcadlGeneProduct25287 (Entrez Gene)
AcadmGeneProduct24158 (Entrez Gene)
AcadsGeneProduct64304 (Entrez Gene)
AcadvlGeneProduct25363 (Entrez Gene)
Acat1GeneProduct25014 (Entrez Gene)
Acetoacetyl-CoAMetaboliteHMDB01484 (HMDB)
Acetyl-CoAMetaboliteHMDB01206 (HMDB)
Acsl1GeneProduct25288 (Entrez Gene)
Acsl3GeneProduct114024 (Entrez Gene)
Acsl4GeneProduct113976 (Entrez Gene)
Acsl5GeneProduct94340 (Entrez Gene)
Acsl6GeneProduct117243 (Entrez Gene)
Acss2GeneProduct311569 (Entrez Gene)
Acyl-CoAMetabolite9029-97-4 (CAS)
Arachidic acidMetaboliteHMDB02212 (HMDB)
Arachidonic acidMetaboliteHMDB01043 (HMDB)
Butanoyl-CoAMetabolite260 (Chemspider)
ChkbGeneProduct29367 (Entrez Gene)
Cpt1aGeneProduct25757 (Entrez Gene)
Cpt1bGeneProduct25756 (Entrez Gene)
Cpt2GeneProduct25413 (Entrez Gene)
CratGeneProduct311849 (Entrez Gene)
Crotonoyl-CoAMetaboliteHMDB02009 (HMDB)
DciGeneProduct29740 (Entrez Gene)
Decanoyl-CoA MetaboliteHMDB06404 (HMDB)
Decr1GeneProduct117543 (Entrez Gene)
Dihydroxyacetone phosphateMetaboliteHMDB01473 (HMDB)
DldGeneProduct298942 (Entrez Gene)
Echs1GeneProduct140547 (Entrez Gene)
GcdhGeneProduct364975 (Entrez Gene)
Gk2GeneProduct289481 (Entrez Gene)
GkGeneProduct79223 (Entrez Gene)
Glutaric acidMetaboliteHMDB00661 (HMDB)
Glutaryl-CoAMetaboliteHMDB01339 (HMDB)
Glyceraldehyde-3-PhosphateMetaboliteHMDB01112 (HMDB)
GlycerolMetaboliteHMDB00131 (HMDB)
Gpd2GeneProduct25062 (Entrez Gene)
HadhGeneProduct113965 (Entrez Gene)
HadhaGeneProduct170670 (Entrez Gene)
HadhbGeneProduct171155 (Entrez Gene)
Hexanoyl-CoAMetaboliteHMDB02845 (HMDB)
L-glycerol-3-phosphateMetaboliteHMDB00126 (HMDB)
Lauroyl-CoAMetaboliteHMDB03571 (HMDB)
Linoleic acidMetaboliteHMDB00673 (HMDB)
Linoleoyl-CoAMetaboliteHMDB01064 (HMDB)
LipcGeneProduct24538 (Entrez Gene)
LipeGeneProduct25330 (Entrez Gene)
LipfGeneProduct50682 (Entrez Gene)
LplGeneProduct24539 (Entrez Gene)
Myristic acidMetaboliteHMDB00806 (HMDB)
Myristoleic acidMetaboliteHMDB02000 (HMDB)
Octanoyl-CoAMetaboliteHMDB01070 (HMDB)
Oleic acidMetaboliteHMDB00207 (HMDB)
Palmitic acidMetaboliteHMDB00220 (HMDB)
Palmitoleic acidMetaboliteHMDB03229 (HMDB)
Palmityl-CoAMetaboliteHMDB01338 (HMDB)
Pnpla2GeneProduct361676 (Entrez Gene)
Slc25a20GeneProduct117035 (Entrez Gene)
Stearic acidMetaboliteHMDB00827 (HMDB)
TPI1GeneProduct24849 (Entrez Gene)
Tetradecanoyl-CoAMetaboliteHMDB01521 (HMDB)
TriacylglycerolMetaboliteCHEBI:17855 (ChEBI)
cis,cis-3,6-Dodecadienoyl-CoAMetaboliteHMDB03952 (HMDB)
trans,cis-Lauro-2,6-dienoyl-CoAMetaboliteHMDB11123 (HMDB)
trans-2-Hexenoyl-CoAMetaboliteHMDB03944 (HMDB)
trans-3-Decenoyl-CoAMetaboliteHMDB02137 (HMDB)

Annotated Interactions

No annotated interactions
Personal tools