Fatty Acid Beta Oxidation (Rattus norvegicus)

From WikiPathways

Jump to: navigation, search
See TCA Cycle pathwaySee TCA Cycle pathwaySaturated fatty acidsSee TCA Cycle pathwayUnsaturated fatty acidsSee Glycolysis pathwayFatty AcidSee TCA Cycle pathwaySee TCA Cycle pathwaySee TCA Cycle pathwaySee TCA Cycle pathwayLipases(S)-3-Hydroxydodecanoyl-CoAAcat1Acsl4DldHadhbHadhbAcsl3Echs1(S)-3-Hydroxytetradecanoyl-CoAHexanoyl-CoAMyristic acidEchs1Slc25a20Cpt1bcis,cis-3,6-Dodecadienoyl-CoA4-cis-Decenoyl-CoAAcetyl-CoAAcadsHadhbAcadmDciPalmityl-CoAAcetyl-CoA(2E)-Decenoyl-CoAHadhaHadhaHadhbEchs1Arachidic acidHadhbHadhaHadhaAcetyl-CoAAcadvlHadhbOleic acidHadhbHadhHadhbMyristoleic acidHadhaHadh(S)-Hydroxyoctanoyl-CoAAcetyl-CoAButanoyl-CoACpt2trans,cis-Lauro-2,6-dienoyl-CoAHadhb(2E)-Octenoyl-CoAGlutaryl-CoAGkCratHadhaAcetyl-CoAAcadlEchs1L-glycerol-3-phosphate3-oxotetradecanoyl-CoA3-Oxohexanoyl-CoAHadhaCrotonoyl-CoAHadhb(S)-Hydroxydecanoyl-CoAHadhaOctanoyl-CoADihydroxyacetone phosphatePalmitic acidAcetyl-CoAHadhaAcetyl-CoACpt1aHadhaAcadmLauroyl-CoADecanoyl-CoA Acadl(S)-3-Hydroxyhexadecanoyl-CoAAcadlLipfGlyceraldehyde-3-PhosphateArachidonic acidGpd2Hadh3-Oxo-octanoyl-CoAAcadsPnpla2Decr1GcdhHadhAcsl6Acadmtrans-3-Decenoyl-CoAGlutaric acidDcitrans-2-Hexenoyl-CoAPalmitoleic acid(2E)-Tetradecenoyl-CoAAcsl5TPI1HadhaChkbTriacylglycerol3-oxopalmitoyl-CoAAcss2HadhbAcsl1LipeHadhbLipc3-Hydroxybutyryl-CoAGlycerolAcetyl-CoAEchs1Acetyl-CoALinoleic acidLinoleoyl-CoAAcadlHadhaTetradecanoyl-CoA(2E)-Dodecenoyl-CoAHadhaHadhHadhbAcetoacetyl-CoA2,4-Decadienoyl-CoA(S)-Hydroxyhexanoyl-CoAAcyl-CoA3-Oxododecanoyl-CoAGk2LplStearic acid3-oxocanoyl-CoATrans-Hexadecanoyl-CoA


Description

Complete fatty acid beta-oxidation pathway for saturated and unsaturated fatty acids, developed and curated internally by BiGCaT Bioinformatics. This pathway was previously split into three parts plus a meta file for statistics. If you still have these you can replace all four with this single pathway.

Comments

HomologyConvert 
This pathway was inferred from Homo sapiens pathway WP143(r20983) with a 80% conversion rate.

Quality Tags

Ontology Terms

 

Bibliography

No bibliography


History

View all...
CompareRevisionActionTimeUserComment
106960view13:42, 17 September 2019MaintBotHMDB identifier normalization
97044view15:04, 26 April 2018AdoBioInfoConnected ONE line. I'm such a good person. #makingtheworldabetterplace
93220view14:18, 4 August 2017DeSlChanged ID of 3-Oxododexanoyl-CoA to more stereospecific one.
79801view16:20, 16 April 2015Mkutmonfixed unconnected lines
70701view19:19, 28 August 2013EgonwConverted a label into a DataNode and added a Chemspider ID.
68414view17:19, 5 July 2013EgonwRemoved HMDB as data source where no identifier was given, and added a ChEBI identifier.
67228view10:23, 26 June 2013Christine ChichesterOntology Term : 'fatty acid beta degradation pathway' added !
62191view20:42, 25 April 2013Cizarmyristoyl was wrongly spelled and was not a primary name. changed to Tetradecanoyl-CoA
60547view13:29, 21 March 2013Cizarannotated crotonoyl-CoA
60483view13:28, 20 March 2013Cizarprimary names and annotated metabolite
60482view13:21, 20 March 2013Cizarchanged primary name (S)-Hydroxyoctanoyl-CoA
60481view13:16, 20 March 2013Cizarannotated Acetyl-CoA
60480view13:12, 20 March 2013CizarAnnotated Acetoacetyl-CoA
60479view12:56, 20 March 2013Cizarannotated glutaryl-CoA
60478view12:49, 20 March 2013Cizarchanged Trans-Dec-2-enoyl-CoA and (S)-3-hydroxydecanoyl-CoA
60477view12:31, 20 March 2013CizarRestored last few changes
60476view12:16, 20 March 2013Cizarchanged Trans-Dec-2-enoyl-CoA to Trans-octadec-2-enoyl-CoA
60475view12:13, 20 March 2013Cizarchanged 3-oxocanoyl-CoA to 3-oxooctadecanoyl-CoA and (s)-3-hydroxydecanoyl-CoA to (s)-3-hydroxyoctadecanoyl-CoA
60472view12:01, 20 March 2013Cizaradded 3-Oxocanoyl-CoA to 3-Oxododecanoyl-CoA
60471view11:36, 20 March 2013CizarPeriodical save, work in progress
60470view11:26, 20 March 2013Cizaradded Acetyl-CoA
60469view11:25, 20 March 2013Cizar(S)-3-Hydroxydodecanoyl-CoA
60468view11:15, 20 March 2013Cizaradded Triacylglycerol
60467view11:04, 20 March 2013CizarAdded metabolite annotation
60195view13:07, 14 March 2013SusanAdd meta ids
60186view09:20, 14 March 2013SusanAdd meta ids
60185view09:09, 14 March 2013SusanAdd meta id
60150view17:13, 13 March 2013SusanAdding meta ids
60147view16:49, 13 March 2013SusanAdding metabolite IDs
60146view16:27, 13 March 2013SusanPeriodical save, work in progress
60145view16:15, 13 March 2013SusanPeriodical save, work in progress
59684view21:06, 5 March 2013SusanPeriodical save, work in progress
41765view02:41, 2 March 2011MaintBotRemoved redundant pathway information and comments
34133view19:30, 9 December 2009MaintBotAutomatic update of empty xrefs
31903view12:47, 14 August 2009MaintBotFixed group labels
31002view01:01, 30 July 2009MaintBotNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
(2E)-Decenoyl-CoAMetaboliteHMDB0003948 (HMDB)
(2E)-Dodecenoyl-CoAMetaboliteHMDB0003712 (HMDB)
(2E)-Octenoyl-CoAMetaboliteHMDB0003949 (HMDB)
(2E)-Tetradecenoyl-CoAMetaboliteHMDB0003946 (HMDB)
(S)-3-Hydroxydodecanoyl-CoAMetaboliteHMDB0003936 (HMDB)
(S)-3-Hydroxyhexadecanoyl-CoAMetaboliteHMDB0003932 (HMDB)
(S)-3-Hydroxytetradecanoyl-CoAMetaboliteHMDB0003934 (HMDB)
(S)-Hydroxydecanoyl-CoAMetaboliteHMDB0003938 (HMDB)
(S)-Hydroxyhexanoyl-CoAMetaboliteHMDB0003942 (HMDB)
(S)-Hydroxyoctanoyl-CoAMetaboliteHMDB0003940 (HMDB)
2,4-Decadienoyl-CoAMetaboliteHMDB0001168 (HMDB)
3-Hydroxybutyryl-CoAMetaboliteHMDB0001166 (HMDB)
3-Oxo-octanoyl-CoAMetabolite11966162 (PubChem-compound)
3-Oxododecanoyl-CoAMetaboliteHMDB0003937 (HMDB)
3-Oxohexanoyl-CoAMetaboliteHMDB0003943 (HMDB)
3-oxopalmitoyl-CoAMetaboliteHMDB0006402 (HMDB)
3-oxotetradecanoyl-CoAMetaboliteHMDB0003935 (HMDB)
4-cis-Decenoyl-CoAMetaboliteHMDB0002145 (HMDB)
AcadlGeneProduct25287 (Entrez Gene)
AcadmGeneProduct24158 (Entrez Gene)
AcadsGeneProduct64304 (Entrez Gene)
AcadvlGeneProduct25363 (Entrez Gene)
Acat1GeneProduct25014 (Entrez Gene)
Acetoacetyl-CoAMetaboliteHMDB0001484 (HMDB)
Acetyl-CoAMetaboliteHMDB0001206 (HMDB)
Acsl1GeneProduct25288 (Entrez Gene)
Acsl3GeneProduct114024 (Entrez Gene)
Acsl4GeneProduct113976 (Entrez Gene)
Acsl5GeneProduct94340 (Entrez Gene)
Acsl6GeneProduct117243 (Entrez Gene)
Acss2GeneProduct311569 (Entrez Gene)
Acyl-CoAMetabolite9029-97-4 (CAS)
Arachidic acidMetaboliteHMDB0002212 (HMDB)
Arachidonic acidMetaboliteHMDB0001043 (HMDB)
Butanoyl-CoAMetabolite260 (Chemspider)
ChkbGeneProduct29367 (Entrez Gene)
Cpt1aGeneProduct25757 (Entrez Gene)
Cpt1bGeneProduct25756 (Entrez Gene)
Cpt2GeneProduct25413 (Entrez Gene)
CratGeneProduct311849 (Entrez Gene)
Crotonoyl-CoAMetaboliteHMDB0002009 (HMDB)
DciGeneProduct29740 (Entrez Gene)
Decanoyl-CoA MetaboliteHMDB0006404 (HMDB)
Decr1GeneProduct117543 (Entrez Gene)
Dihydroxyacetone phosphateMetaboliteHMDB0001473 (HMDB)
DldGeneProduct298942 (Entrez Gene)
Echs1GeneProduct140547 (Entrez Gene)
GcdhGeneProduct364975 (Entrez Gene)
Gk2GeneProduct289481 (Entrez Gene)
GkGeneProduct79223 (Entrez Gene)
Glutaric acidMetaboliteHMDB0000661 (HMDB)
Glutaryl-CoAMetaboliteHMDB0001339 (HMDB)
Glyceraldehyde-3-PhosphateMetaboliteHMDB0001112 (HMDB)
GlycerolMetaboliteHMDB0000131 (HMDB)
Gpd2GeneProduct25062 (Entrez Gene)
HadhGeneProduct113965 (Entrez Gene)
HadhaGeneProduct170670 (Entrez Gene)
HadhbGeneProduct171155 (Entrez Gene)
Hexanoyl-CoAMetaboliteHMDB0002845 (HMDB)
L-glycerol-3-phosphateMetaboliteHMDB0000126 (HMDB)
Lauroyl-CoAMetaboliteHMDB0003571 (HMDB)
Linoleic acidMetaboliteHMDB0000673 (HMDB)
Linoleoyl-CoAMetaboliteHMDB0001064 (HMDB)
LipcGeneProduct24538 (Entrez Gene)
LipeGeneProduct25330 (Entrez Gene)
LipfGeneProduct50682 (Entrez Gene)
LplGeneProduct24539 (Entrez Gene)
Myristic acidMetaboliteHMDB0000806 (HMDB)
Myristoleic acidMetaboliteHMDB0002000 (HMDB)
Octanoyl-CoAMetaboliteHMDB0001070 (HMDB)
Oleic acidMetaboliteHMDB0000207 (HMDB)
Palmitic acidMetaboliteHMDB0000220 (HMDB)
Palmitoleic acidMetaboliteHMDB0003229 (HMDB)
Palmityl-CoAMetaboliteHMDB0001338 (HMDB)
Pnpla2GeneProduct361676 (Entrez Gene)
Slc25a20GeneProduct117035 (Entrez Gene)
Stearic acidMetaboliteHMDB0000827 (HMDB)
TPI1GeneProduct24849 (Entrez Gene)
Tetradecanoyl-CoAMetaboliteHMDB0001521 (HMDB)
TriacylglycerolMetaboliteCHEBI:17855 (ChEBI)
cis,cis-3,6-Dodecadienoyl-CoAMetaboliteHMDB0003952 (HMDB)
trans,cis-Lauro-2,6-dienoyl-CoAMetaboliteHMDB0011123 (HMDB)
trans-2-Hexenoyl-CoAMetaboliteHMDB0003944 (HMDB)
trans-3-Decenoyl-CoAMetaboliteHMDB0002137 (HMDB)

Annotated Interactions

No annotated interactions
Personal tools