Folic Acid Network (Mus musculus)

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3101816, 286, 29511192127252614712, 20824BBPositive effectNucleotide biosynthesisInfluence on expressionBFormation of HemeBBMain functionsTransformationReactionTCompetitionBBBBPLASMACNBUnspecified interactionBTMETABOLITEBFormation of methionineInterconversionBTTBTSynthesis of cholineBTBUnspecified effectBGeneric enzymeBindingBBTIEBConversionBINTRACELULARTransportTTBBBBBNegative effectBBSepx1S-Adenosylhomocysteine Thromboxane B2Leukotriene C4Gpx4Leukotriene B4PGF2aCobalaminH2OHypoxanthinePtgdsSODCysteineBetaineCalciumFADPGG2Tromboxane A2B5,10-METHYL-THFF2-IsoprostaneLeukotriene B4Pyridoxal-5'-phosphateCysteineTRXR 3RiboflavinGlutathione disulfideTTLA (n-6)GsrC22:5 (n-6)NiacinAscorbic acidCatS-AdenosylmethioninePGH2FOLIC ACIDGlycinePGI2Gpx2ALA (n-3)a TocopherolCopperLA (n-6)ZincLipoxin A4Methylmalonic acidMethionineGpx1L-Glutamic acidEthanolamineHomocysteinePnpoAA (n-6)Gpx3CNSelkFOLIC ACIDMethionine sulfoxideThromboxane A2Txnrd2LeukotrieneE4PGE3AA (n-6)CystathionePGF2aNADPH5-HPETENADPCalciumSerineVitamin B12CobalaminCopperFMN1TLipoic acidIronEndoperoxidaseTxnrd1PGI2S-Adenosylmethionine 1-methylnicotinamideZincDHA (n-3)CholineSeleniumC22:5 (n-6)Ascorbic acidROSALA (n-3)XanthineLeukotriene A4IETryptophanMtrXdhDHA (n-3)PGE2iPF2-alphaH2O2SeleniumAdipic acidTHASPyridoxal-5'-phosphateEthanolamine5,10-METHYL-THFO2COX2d5 desaturaseGlutathionePtgisUric acidIronPtgesLeukotriene D4CbsLipoxin A4NicotinamideCOX115-HETEThioredoxinLeukotriene F4Alox5SerineB2-Ketobutyric acidFads2Vitamin B12PGFSAdipic acid PGH3d4 desaturaseNADPLeukotriene D4PGD22-Ketobutyric acidKmoGlutathioneLipoxin B4PGE2HomocysteineEPA (n-3)Gpx6ManganeseLeukotriene C4PGD2S-Adenosylhomocysteine MthfrTranscobalaminHemeL-Methioninea-tocopherolCarnitineLeukotrieneE4Uric acidL-Glutamic acidSepw11-MethylnicotinamideEPA (n-3)Hypoxanthine15-HETENADPHGlycinePGG3Methylmalonic acid 1719, 2321315224


Description

The folic acid-centred micronutrient biological network. The most relevant biochemical processes related to folic acid in the context of metabolism, oxidation and inflammation are represented. Also, the compartmental separation (intracellular vs. plasma) is presented, identifying the folic acid centred plasma metabolome.

Comments

HomologyConvert 
This pathway was inferred from Homo sapiens pathway WP176(r30153) with a 58% conversion rate.

Quality Tags

Ontology Terms

 

Bibliography

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  1. Ben van Ommen, Susan Fairweather-Tait, Andreas Freidig, Alwine Kardinaal, Augustin Scalbert, Suzan Wopereis; ''A network biology model of micronutrient related health''; Br J Nutr, 2008 PubMed
  2. https://analysis.ingenuity.com/pa/; ''Prostaglandin and Leukotriene Metabolism''; Ingenuity software
  3. ''Food and Nutrition Board, Institute of Medicine. Vitamin B6. Dietary Reference Intakes: Thiamin, Riboflavin, Niacin, Vitamin B6, Vitamin B12, Pantothenic Acid, Biotin, and Choline.''; Washington D.C.: National Academies Press, 1998
  4. Longhi RC, Fleisher LD, Tallan HH, Gaull GE.; ''Cystathionine beta-synthase deficiency: a qualitative abnormality of the deficient enzyme modified by vitamin B6 therapy.''; Pediatr Res. , 1977 PubMed
  5. Hall CA; ''Transcobalamins I and II as natural transport proteins of vitamin B12. ''; The Journal of clinical investigation , 1975 PubMed
  6. Fowler B.; ''Homocysteine: overview of biochemistry, molecular biology, and role in disease processes. ''; Semin Vasc Med, 2005 PubMed
  7. http://lpi.oregonstate.edu/infocenter/vitamins/vitaminB6/; ''Vitamin B 6''; Linus Paulin institute
  8. Lu C, Qiu F, Zhou H, Peng Yp, Hao W, Xu J, Yuan J, Wang S, Qiang B, Xu C, Peng X.; ''Identification and characterization of selenoprotein K: an antioxidant in cardiomyocytes.''; FEBS Lett., 2006 PubMed
  9. Kryukov GV, Kumar RA, Koc A, Sun Z, Gladyshev VN.; ''Selenoprotein R is a zinc-containing stereo-specific methionine sulfoxide reductase.''; Proc Natl Acad Sci U S A. , 2002 PubMed
  10. https://analysis.ingenuity.com/; ''Prostaglandin and Leukotriene Metabolism''; Ingenuity software
  11. Selhub J.; ''Homocysteine metabolism.''; Annu Rev Nutr. , 1999 PubMed
  12. Morrow JD, Roberts LJ 2nd.; ''The isoprostanes. Current knowledge and directions for future research.''; Biochem Pharmacol., 1996 PubMed
  13. Petersen Shay K, Moreau RF, Smith EJ, Hagen TM.; ''Is alpha-lipoic acid a scavenger of reactive oxygen species in vivo? Evidence for its initiation of stress signaling pathways that promote endogenous antioxidant capacity.''; IUBMB Life., 2008 PubMed
  14. https://analysis.ingenuity.com/; ''Arachidonic Acid Metabolism''; Ingenuity sofware
  15. Bandarian V, Pattridge KA, Lennon BW, Huddler DP, Matthews RG, Ludwig ML.; ''Domain alternation switches B(12)-dependent methionine synthase to the activation conformation.''; Nat Struct Biol. , 2002 PubMed
  16. Denis D, Charleson S, Rackham A, Jones TR, Ford-Hutchinson AW, Lord A, Cirino M, Girard Y, Larue M, Rokach J.; ''Synthesis and biological activities of leukotriene F4 and leukotriene F4 sulfone''; Prostaglandins., 1982 PubMed
  17. Selhub J.; ''Homocysteine metabolism.''; Annu Rev Nutr, 1999 PubMed
  18. Guzik TJ, Korbut R, Adamek-Guzik T.; ''Nitric oxide and superoxide in inflammation and immune regulation.''; J Physiol Pharmacol., 2003 PubMed
  19. Leclerc D, Campeau E, Goyette P, Adjalla CE, Christensen B, Ross M, Eydoux P, Rosenblatt DS, Rozen R, Gravel RA.; ''Human methionine synthase: cDNA cloning and identification of mutations in patients of the cblG complementation group of folate/cobalamin disorders. ''; Hum Mol Genet. , 1996 PubMed
  20. Singh U, Devaraj S, Jialal I.; ''Vitamin E, oxidative stress, and inflammation.''; Annu Rev Nutr., 2005 PubMed
  21. WikiPathways; ''Selenoproteins''; http://www.wikipathways.org/index.php/Pathway:Homo_sapiens:Selenoproteins
  22. Proctor PH.; ''Free radicals, uric acid, and human disease.''; Free Radic Biol Med., 1996 PubMed
  23. Basu S.; ''Isoprostanes: novel bioactive products of lipid peroxidation.''; Free Radic Res., 2004 PubMed
  24. http://lpi.oregonstate.edu/infocenter/vitamins/fa/; ''Folic acid''; Linus Pauling Institute
  25. Vladimir Kery, Loelle Poneleit, Jeffrey D. Meyer, Mark C. Manning, Jan P. Kraus; ''Binding of Pyridoxal 5'-Phosphate to the Heme Protein Human Cystathionine -Synthase''; Biochemistry. , 1998
  26. George J, Struthers AD.; ''The role of urate and xanthine oxidase inhibitors in cardiovascular disease.''; Cardiovasc Ther., 2008 PubMed
  27. Wilson A, Platt R, Wu Q, Leclerc D, Christensen B, Yang H, Gravel RA, Rozen R; ''A common variant in methionine synthase reductase combined with low cobalamin (vitamin B12) increases risk for spina bifida. ''; Molecular genetics and metabolism, 1999 PubMed
  28. Fernandes-Costa F: Metz J.; ''Vitamin B12 binders (transcobalamins) in serum.''; Crit Rev Clin Lab Sci. , 1982 PubMed

History

View all...
CompareRevisionActionTimeUserComment
101980view20:31, 21 November 2018EgonwRemoved whitespace in PubMed identifiers.
101976view20:00, 21 November 2018EgonwRemoved whitespace in PubMed identifiers.
85058view10:53, 10 April 2016EgonwReplaced a Wikipedia ID with a ChEBI ID.
82696view18:11, 22 October 2015EgonwFixed a typo.
74467view16:12, 24 April 2014EgonwFixed a PubMed ID.
69126view18:14, 8 July 2013MaintBotUpdated to 2013 gpml schema
69056view18:04, 8 July 2013EgonwReplaced an outdated HMDB identifier with the 3.5 one.
68384view09:42, 4 July 2013EgonwMade the link to Wikipedia machine readable.
68383view09:41, 4 July 2013EgonwFixed the DataNode type of two nodes with gene identifiers.
67254view10:27, 26 June 2013Christine ChichesterOntology Term : 'pathway of folate cycle/metabolism' added !
60224view20:01, 14 March 2013EgonwReplaced PubChem-substance with PubChem-compound.
59041view20:43, 21 February 2013MaintBotUpdated Ensembl and UniProt data source
48256view21:44, 17 May 2012KhanspersUpdating PubChem xrefs
48230view05:32, 17 May 2012MaintBotAutomatic update of PubChem xrefs
43782view20:38, 27 July 2011Samuel SklarSpecify description
43781view19:18, 27 July 2011Samuel SklarPeriodical save, work in progress
42731view22:19, 24 April 2011MaintBotfixed blank db refs
42730view22:17, 24 April 2011MaintBotfixed odd db refs
41311view00:24, 2 March 2011MaintBotRemoved redundant pathway information and comments
34393view22:53, 9 December 2009MaintBotAutomatic update of empty xrefs
33189view18:05, 5 November 2009KhanspersModified categories
32300view13:16, 15 August 2009MaintBotFixed text labels
31873view12:39, 14 August 2009MaintBotFixed group labels
31329view20:21, 13 August 2009MaintBotFixed text labels
30907view00:26, 30 July 2009MaintBotNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
1-MethylnicotinamideMetaboliteHMDB00699 (HMDB)
1-methylnicotinamideMetaboliteHMDB00699 (HMDB)
15-HETEMetaboliteHMDB11134 (HMDB)
2-Ketobutyric acidMetaboliteHMDB00005 (HMDB)
5,10-METHYL-THFMetaboliteHMDB01396 (HMDB)
5-HPETEMetaboliteHMDB01193 (HMDB)
AA (n-6)MetaboliteHMDB01043 (HMDB)
ALA (n-3)MetaboliteHMDB01388 (HMDB)
Adipic acid MetaboliteHMDB00448 (HMDB)
Adipic acidMetaboliteHMDB00448 (HMDB)
Alox5Protein11689 (Entrez Gene)
Ascorbic acidMetaboliteHMDB00044 (HMDB)
B
BetaineMetaboliteHMDB00043 (HMDB)
C22:5 (n-6)MetaboliteHMDB01976 (HMDB)
CN
COX1Protein3337205 (Entrez Gene)
COX2Protein3337209 (Entrez Gene)
CalciumMetaboliteHMDB00464 (HMDB)
CarnitineMetaboliteHMDB00062 (HMDB)
CatProtein12359 (Entrez Gene)
CbsProtein12411 (Entrez Gene)
CholineMetaboliteHMDB00097 (HMDB)
CobalaminMetaboliteHMDB02174 (HMDB)
CopperMetaboliteHMDB00657 (HMDB)
CystathioneMetaboliteHMDB00099 (HMDB)
CysteineMetaboliteHMDB00574 (HMDB)
DHA (n-3)MetaboliteHMDB02183 (HMDB)
EPA (n-3)MetaboliteHMDB01999 (HMDB)
EndoperoxidaseProtein
EthanolamineMetaboliteHMDB00149 (HMDB)
F2-IsoprostaneMetaboliteHMDB04659 (HMDB)
FADMetabolite703 (PubChem-compound)
FMN1GeneProduct342184 (Entrez Gene)
FOLIC ACIDMetaboliteHMDB00121 (HMDB)
Fads2Protein56473 (Entrez Gene)
Glutathione disulfideMetabolite65359 (PubChem-compound) Type your comment here
GlutathioneMetaboliteHMDB00125 (HMDB)
GlycineMetaboliteHMDB00123 (HMDB)
Gpx1Protein14775 (Entrez Gene)
Gpx2Protein14776 (Entrez Gene)
Gpx3Protein14778 (Entrez Gene)
Gpx4Protein625249 (Entrez Gene)
Gpx6Protein75512 (Entrez Gene)
GsrProteinENSMUSG00000031584 (Ensembl) Type your comment here
H2O2MetaboliteHMDB03125 (HMDB)
H2OMetaboliteHMDB02111 (HMDB)
HemeMetaboliteHMDB03178 (HMDB)
HomocysteineMetabolite
HomocysteineMetaboliteHMDB00742 (HMDB)
HypoxanthineMetaboliteHMDB00157 (HMDB)
IE
IronMetaboliteHMDB00692 (HMDB)
KmoProtein98256 (Entrez Gene)
L-Glutamic acidMetaboliteHMDB00148 (HMDB)
L-MethionineMetaboliteHMDB00696 (HMDB)
LA (n-6)MetaboliteHMDB00673 (HMDB)
Leukotriene A4MetaboliteHMDB01337 (HMDB)
Leukotriene B4MetaboliteHMDB01085 (HMDB)
Leukotriene C4MetaboliteHMDB01198 (HMDB)
Leukotriene D4MetaboliteHMDB03080 (HMDB)
Leukotriene F4Metabolite
LeukotrieneE4MetaboliteHMDB02200 (HMDB)
Lipoic acidMetaboliteHMDB01451 (HMDB)
Lipoxin A4MetaboliteHMDB04385 (HMDB)
Lipoxin B4MetaboliteHMDB05082 (HMDB)
ManganeseMetaboliteHMDB01333 (HMDB)
Methionine sulfoxideMetaboliteHMDB02005 (HMDB)
MethionineMetaboliteHMDB00696 (HMDB)
Methylmalonic acid MetaboliteHMDB00202 (HMDB)
Methylmalonic acidMetaboliteHMDB00202 (HMDB)
MthfrProtein17769 (Entrez Gene)
MtrProtein238505 (Entrez Gene)
NADPHMetaboliteHMDB00221 (HMDB)
NADPMetaboliteHMDB00217 (HMDB)
NiacinMetaboliteHMDB01406 (HMDB)
NicotinamideMetabolite936 (PubChem-compound)
O2MetaboliteHMDB01377 (HMDB)
PGD2MetaboliteHMDB01403 (HMDB)
PGE2Metabolite
PGE3MetaboliteHMDB02664 (HMDB)
PGF2aMetaboliteHMDB01139 (HMDB)
PGFSProtein
PGG2MetaboliteHMDB03235 (HMDB)
PGG3Metabolite
PGH2MetaboliteHMDB01381 (HMDB)
PGH3Metabolite
PGI2Metabolite
PGI2MetaboliteHMDB01335 (HMDB)
PnpoProtein103711 (Entrez Gene)
PtgdsProtein19215 (Entrez Gene)
PtgesProtein64292 (Entrez Gene)
PtgisProtein19223 (Entrez Gene)
Pyridoxal-5'-phosphateMetaboliteHMDB01491 (HMDB)
ROSMetaboliteCHEBI:26523 (ChEBI) http://en.wikipedia.org/wiki/Reactive_oxygen_species
RiboflavinMetaboliteHMDB00244 (HMDB) Type your comment here
S-Adenosylhomocysteine MetaboliteHMDB00939 (HMDB)
S-Adenosylmethionine MetaboliteHMDB01185 (HMDB)
S-AdenosylmethionineMetaboliteHMDB01185 (HMDB)
SODProtein
SeleniumMetaboliteHMDB01349 (HMDB)
SelkProtein80795 (Entrez Gene)
Sepw1Protein20364 (Entrez Gene)
Sepx1Protein27361 (Entrez Gene)
SerineMetaboliteHMDB00187 (HMDB)
T
THASProtein
TRXR 3Protein
TT
ThioredoxinProtein7295 (Entrez Gene)
Thromboxane A2MetaboliteHMDB01452 (HMDB)
Thromboxane B2MetaboliteHMDB03252 (HMDB)
TranscobalaminProtein
Tromboxane A2MetaboliteHMDB01452 (HMDB)
TryptophanMetaboliteHMDB00929 (HMDB)
Txnrd1Protein50493 (Entrez Gene)
Txnrd2Protein26462 (Entrez Gene)
Uric acidMetaboliteHMDB00289 (HMDB)
Vitamin B12MetaboliteHMDB00607 (HMDB)
XanthineMetaboliteHMDB00292 (HMDB)
XdhProtein22436 (Entrez Gene)
ZincMetaboliteHMDB01303 (HMDB)
a TocopherolMetaboliteHMDB01893 (HMDB)
a-tocopherolMetaboliteHMDB01893 (HMDB)
d4 desaturaseProtein
d5 desaturaseProtein
iPF2-alphaMetaboliteHMDB04659 (HMDB)

Annotated Interactions

No annotated interactions
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