WikiPathways

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|colspan="8"|<div class="frontPagePanel yellowBg" style="width:95%;margin:1em;width=100%">
 
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<h2 class="frontPagePanel blueFg">Sept 2010 Curation Jamboree Is On!</h2>
 
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<font size=2>'''Have you always wanted to contribute to WikiPathways but didn't know where to start? Here's your chance! We are organizing our third curation event to improve the quality and extent of our pathways. Curation events are open to all registered WikiPathways users, no prior experience necessary! [[Curation_Jamboree_Sep_2010|More about the jamboree...]] [[Support_chat_channel|Join the live forum...]]'''</font></div>
 
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Revision as of 15:36, 25 September 2010


Welcome to WikiPathways BETA

In the new tradition of Wikipedia, WikiPathways is an open, public platform dedicated to the curation of biological pathways by and for the scientific community. More about WikiPathways...

Finding Pathways

Search{{#googleCoop:}} Browse

Browse by species and category

You can search by:
  • Pathway name (Apoptosis)
  • Gene or protein name (p53)
  • Any page content (cancer)

Contributing New Pathways

Create

Create a new pathway page

Suggest

Add a pathway to the wish list

Sample Pathway Pages

Sandbox

Play with the editor tools

Check out the following pages:

For more information see the Help pages


Today's Featured Pathway

Humoral Immune Response to Fungal and Bacterial Pathogens (Drosophila melanogaster)
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/0/00/WP3660_38967.svg:
Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/0/00/WP3660_38967.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Humoral Immune ...', 'https://www.wik...', 'Humoral Immune ...', 'center', 'pwthumb', '300')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP3660', '300', 'center', 'Humoral Immune ...', 'pathway', 'Humoral Immune ...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
  10. 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  12. 11 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{{Template:Toda...')
  13. 12 /var/www/wikipathways/includes/parser/Parser.php(439): Parser->internalParse('{{Template:Toda...')
  14. 13 /var/www/wikipathways/wpi/extensions/PathwayOfTheDay/PathwayOfTheDay.php(60): Parser->recursiveTagParse('{{Template:Toda...')
  15. 14 [internal function]: getPathwayOfTheDay(Object(Parser), 'Tuesday 4 Augus...', 'Curation:Featur...', 'true')
  16. 15 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayOfThe...', Array)
  17. 16 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  18. 17 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  19. 18 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('__NOEDITSECTION...')
  20. 19 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('__NOEDITSECTION...')
  21. 20 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('__NOEDITSECTION...', Object(Title), Object(ParserOptions), true, true, 38967)
  22. 21 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('__NOEDITSECTION...', Object(Title), true, true)
  23. 22 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('__NOEDITSECTION...', Object(Title), true)
  24. 23 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('__NOEDITSECTION...')
  25. 24 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  26. 25 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  27. 26 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  28. 27 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  29. 28 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  30. 29 {main}

Latest edits

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SARS-CoV-2 and COVID-19 Pathway (Homo sapiens) by Egon Willighagen
31 July 2020
Williams-Beuren region duplication syndrome (Homo sapiens) by Egon Willighagen
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Latest discussions

6 July 2020
MRE11A with mouse gene annotation (1) by Egon Willighagen
22 June 2020
Dich vu fpttelecom (1) by Dịch Vụ FptTelecom
19 June 2020
NRP2 seems to bind to a Spike derived peptide after "protease activity at the furin site" (1) by Chris Evelo
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Forum

        more...

    New!

    Community Interest

    Portals within WikiPathways for communities with focused pathway interests:

    Want to start your own Portal? Contact us!

    Statistics

    • There are 2851 pathways
    • Number of pathways (and unique genes) per species:
    Anopheles gambiae: 21 (428)
    Arabidopsis thaliana: 92 (956)
    Bacillus subtilis: 3 (14)
    Beta vulgaris: 1 (25)
    Bos taurus: 274 (3743)
    Caenorhabditis elegans: 66 (882)
    Canis familiaris: 112 (2820)
    Danio rerio: 105 (2708)
    Drosophila melanogaster: 35 (565)
    Escherichia coli: 12 (28)
    Equus caballus: 12 (200)
    Gallus gallus: 100 (2106)
    Glycine max: 1 (2)
    Gibberella zeae: 2 (0)
    Homo sapiens: 1195 (8520)
    Hordeum vulgare: 1 (9)
    Mus musculus: 228 (4985)
    Mycobacterium tuberculosis: 16 (148)
    Oryza sativa: 69 (535)
    Pan troglodytes: 115 (2910)
    Populus trichocarpa: 5 (0)
    Rattus norvegicus: 173 (3623)
    Saccharomyces cerevisiae: 135 (856)
    Solanum lycopersicum: 7 (5)
    Sus scrofa: 9 (65)
    Vitis vinifera: 1 (0)
    Zea mays: 58 (31)
    Plasmodium falciparum: 1 (0)
    Brassica napus: 2 (162)
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