WikiPathways

From WikiPathways

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<h2 class="frontPagePanel blueFg">WikiPathways Summit -- Register Today!</h2>{{#imgLink:wp18summit.png|430|center||external|https://gladstone.org/WP18Summit|WP18Summit}}
<h2 class="frontPagePanel blueFg">WikiPathways Summit -- Register Today!</h2>{{#imgLink:wp18summit.png|430|center||external|https://gladstone.org/WP18Summit|WP18Summit}}
<h2 class="frontPagePanel blueFg">Today's Featured Pathway</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:FeaturedPathway | true}}
<h2 class="frontPagePanel blueFg">Today's Featured Pathway</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:FeaturedPathway | true}}
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<h2 class="frontPagePanel blueFg">Curator of the Week</h2>{{#imgLink:AmadeoMunozGarcia.png|70|center|||http://www.wikipathways.org/index.php/User:Madeomuga|Amadeo Muñoz García}} [http://www.wikipathways.org/index.php/User:Madeomuga Amadeo Muñoz García - Maastricht University]
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<h2 class="frontPagePanel blueFg">Curator of the Week</h2>{{#imgLink:DeniseSlenter.png|70|center|||http://www.wikipathways.org/index.php/User:DeSl|Denise Slenter}} [http://www.wikipathways.org/index.php/User:DeSl Denise Slenter - Maastricht University]
<h2 class="frontPagePanel blueFg" style="margin-top:0.5em;">Updates</h2>
<h2 class="frontPagePanel blueFg" style="margin-top:0.5em;">Updates</h2>
* '''September 2018 Release''': Total of 1576 pathways and edits from 11 contributors
* '''September 2018 Release''': Total of 1576 pathways and edits from 11 contributors

Revision as of 14:42, 7 October 2018

Welcome to WikiPathways BETA

WikiPathways is a database of biological pathways maintained by and for the scientific community.

Find Pathways

Search

Browse

Browse by species and category

You can search by:
  • Pathway name (Apoptosis)
  • Gene or protein name (p53)
  • Any page content (cancer)

Get Pathways

Download

Multiple formats and methods

Growth

New pathways added each month

Edit Pathways

Learn

Play with the editor tools

Convert

Queue figures for conversion

We want your feedback! A quick survey to help us focus development: https://www.surveymonkey.com/r/wikipathways


WikiPathways Summit -- Register Today!

Today's Featured Pathway

Focal Adhesion (Mus musculus)
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/1/19/WP85_98712.svg:
Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/1/19/WP85_98712.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Focal Adhesion', 'https://www.wik...', 'Focal Adhesion', 'center', 'pwthumb', '300')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP85', '300', 'center', 'Focal Adhesion', 'pathway', 'Focal Adhesion')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
  10. 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  12. 11 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{{Template:Toda...')
  13. 12 /var/www/wikipathways/includes/parser/Parser.php(439): Parser->internalParse('{{Template:Toda...')
  14. 13 /var/www/wikipathways/wpi/extensions/PathwayOfTheDay/PathwayOfTheDay.php(60): Parser->recursiveTagParse('{{Template:Toda...')
  15. 14 [internal function]: getPathwayOfTheDay(Object(Parser), 'Thursday 20 Feb...', 'Curation:Featur...', 'true')
  16. 15 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayOfThe...', Array)
  17. 16 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  18. 17 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  19. 18 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| ?<!-- Specia...')
  20. 19 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| ?<!-- Specia...')
  21. 20 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| ?<!-- Specia...', Object(Title), Object(ParserOptions), true, true, 98772)
  22. 21 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| ?<!-- Specia...', Object(Title), true, true)
  23. 22 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| ?<!-- Specia...', Object(Title), true)
  24. 23 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| ?<!-- Specia...')
  25. 24 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  26. 25 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  27. 26 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  28. 27 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  29. 28 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  30. 29 {main}

Curator of the Week

Denise Slenter - Maastricht University

Updates

  • September 2018 Release: Total of 1576 pathways and edits from 11 contributors
  • August 2018 Release: Total of 1573 pathways and edits from 20 contributors
  • July 2018 Release: Total of 1570 pathways and edits from 21 contributors
  • June 2018 Release: 16 new pathways and edits from 29 contributors
  • May 2018 Release: 15 new pathways and edits from 30 contributors
  • April 2018 Release: 8 new pathways and edits from 22 contributors
  • March 2018 Release: 346 edits by 15 contributors, and 3 new pathways
  • February 2018 Release: 247 edits by 10 contributors, and 5 new pathways

    more...

Discussions

29 January 2020
WP4767 (2) by Ritchie Lee
27 January 2020
«no subject» (46) by Denise Slenter
    more...

Forum

    Google group wikipathways-discuss


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