WikiPathways

From WikiPathways

(Difference between revisions)
Jump to: navigation, search
(Added news item)
(Cleaned up wording in "Check out the following pages")
Line 62: Line 62:
|align="left" valign="top" style="width:45%;"|
|align="left" valign="top" style="width:45%;"|
'''Check out the following pages:'''<br>
'''Check out the following pages:'''<br>
-
* [[Special:RecentPathwayChanges | Show recent changes]]
+
* [[Special:RecentPathwayChanges | Recent changes]]
-
* [[Special:NewPathwaysPage | Show new pathways]]
+
* [[Special:NewPathwaysPage | New pathways]]
-
* [[Special:MostEditedPathwaysPage | Show most edited pathways]]
+
* [[Special:MostEditedPathwaysPage | Most edited pathways]]
-
* [[Special:PopularPathwaysPage | Show most viewed pathways]]
+
* [[Special:PopularPathwaysPage | Most viewed pathways]]
-
* [[Special:SpecialWishList | Show pathway wish list]]
+
* [[Special:SpecialWishList | Pathway wish list]]
-
* [http://wikipathways.tumblr.com/ Selected publications using WikiPathways].
+
* [http://wikipathways.tumblr.com/ WikiPathways Blog].
-
'''For more information see the [[Help:Contents |Help pages]]'''
+
'''For more information see the [[Help:Contents |Help]]'''
|rowspan="1" align="center" style="width:1%;"|
|rowspan="1" align="center" style="width:1%;"|
|-
|-

Revision as of 18:59, 13 January 2017


We want your feedback! A quick survey to help us focus development and renew funding. https://www.surveymonkey.com/r/wikipathways

Welcome to WikiPathways BETA

WikiPathways is an open, public platform dedicated to the curation of biological pathways by and for the scientific community. More about WikiPathways...

Finding Pathways

Search

Browse

Browse by species and category

You can search by:
  • Pathway name (Apoptosis)
  • Gene or protein name (p53)
  • Any page content (cancer)

Contributing New Pathways

Create

Create a new pathway page

Suggest

Add a pathway to the wish list

Sample Pathway Pages

Sandbox

Play with the editor tools

Check out the following pages:

For more information see the Help


Today's Featured Pathway

The alternative pathway of fetal androgen synthesis (Homo sapiens)
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/d/d9/WP4524_91159.svg:
Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/d/d9/WP4524_91159.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'The alternative...', 'https://www.wik...', 'The alternative...', 'center', 'pwthumb', '300')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4524', '300', 'center', 'The alternative...', 'pathway', 'The alternative...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
  10. 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  12. 11 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{{Template:Toda...')
  13. 12 /var/www/wikipathways/includes/parser/Parser.php(439): Parser->internalParse('{{Template:Toda...')
  14. 13 /var/www/wikipathways/wpi/extensions/PathwayOfTheDay/PathwayOfTheDay.php(60): Parser->recursiveTagParse('{{Template:Toda...')
  15. 14 [internal function]: getPathwayOfTheDay(Object(Parser), 'Wednesday 8 Apr...', 'Curation:Featur...', 'true')
  16. 15 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayOfThe...', Array)
  17. 16 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  18. 17 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  19. 18 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('__NOEDITSECTION...')
  20. 19 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('__NOEDITSECTION...')
  21. 20 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('__NOEDITSECTION...', Object(Title), Object(ParserOptions), true, true, 91160)
  22. 21 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('__NOEDITSECTION...', Object(Title), true, true)
  23. 22 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('__NOEDITSECTION...', Object(Title), true)
  24. 23 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('__NOEDITSECTION...')
  25. 24 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  26. 25 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  27. 26 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  28. 27 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  29. 28 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  30. 29 {main}

News

  • January 2017 release of pathway content: Download Page
  • 23 new pathways with 175 novel human genes released! Mapped through homology from mouse pathways. WikiPathways Blog
  • And this Resource Description Framework API is described in this PLOS Comput Bio paper published June 2016.
  • Read about the Reactome pathways on this site in this PLOS Comput Bio paper published May 2016.

Latest discussions

6 April 2020
Bulk Ammo Needs (1) by bulkcheapammo
26 March 2020
Pathway is very simplified (2) by Chris Evelo
22 March 2020
Pathway is very simplified (1) by Matthew Conroy
    more...

Forum

        Google group wikipathways-discuss
    Personal tools