WikiPathways

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* [[Portal:Micronutrient|Micronutrient initiative]] nutrition pathways
* [[Portal:Micronutrient|Micronutrient initiative]] nutrition pathways
* [[Portal:GenMAPP|GenMAPP]] analysis pathways
* [[Portal:GenMAPP|GenMAPP]] analysis pathways
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* [[Portal:BiGCaT|BiGCaT]] contributed pathways
 
Want to start your own Portal? [[Contact_Us|Contact us!]]
Want to start your own Portal? [[Contact_Us|Contact us!]]

Revision as of 11:30, 7 August 2013


Welcome to WikiPathways BETA

WikiPathways is an open, public platform dedicated to the curation of biological pathways by and for the scientific community. More about WikiPathways...

Finding Pathways

Search

Browse

Browse by species and category

You can search by:
  • Pathway name (Apoptosis)
  • Gene or protein name (p53)
  • Any page content (cancer)

Contributing New Pathways

Create

Create a new pathway page

Suggest

Add a pathway to the wish list

Sample Pathway Pages

Sandbox

Play with the editor tools

Check out the following pages:

For more information see the Help pages


Today's Featured Pathway

Joubert Syndrome (Homo sapiens)
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/9/9a/WP4656_70321.svg:
Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/9/9a/WP4656_70321.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Joubert Syndrom...', 'https://www.wik...', 'Joubert Syndrom...', 'center', 'pwthumb', '300')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4656', '300', 'center', 'Joubert Syndrom...', 'pathway', 'Joubert Syndrom...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
  10. 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  12. 11 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{{Template:Toda...')
  13. 12 /var/www/wikipathways/includes/parser/Parser.php(439): Parser->internalParse('{{Template:Toda...')
  14. 13 /var/www/wikipathways/wpi/extensions/PathwayOfTheDay/PathwayOfTheDay.php(60): Parser->recursiveTagParse('{{Template:Toda...')
  15. 14 [internal function]: getPathwayOfTheDay(Object(Parser), 'Thursday 2 Apri...', 'Curation:Featur...', 'true')
  16. 15 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayOfThe...', Array)
  17. 16 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  18. 17 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  19. 18 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('__NOEDITSECTION...')
  20. 19 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('__NOEDITSECTION...')
  21. 20 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('__NOEDITSECTION...', Object(Title), Object(ParserOptions), true, true, 70484)
  22. 21 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('__NOEDITSECTION...', Object(Title), true, true)
  23. 22 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('__NOEDITSECTION...', Object(Title), true)
  24. 23 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('__NOEDITSECTION...')
  25. 24 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  26. 25 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  27. 26 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  28. 27 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  29. 28 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  30. 29 {main}

Latest discussions

26 March 2020
Pathway is very simplified (2) by Chris Evelo
22 March 2020
Pathway is very simplified (1) by Matthew Conroy
23 February 2020
Welcome new user (6) by Susan Coort
    more...

Forum

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    New!

    Community Interest

    Portals within WikiPathways for communities with focused pathway interests:

    Want to start your own Portal? Contact us!

    Statistics

    • There are 2817 pathways
    • Number of pathways (and unique genes) per species:
    Anopheles gambiae: 23 (428)
    Arabidopsis thaliana: 94 (956)
    Bacillus subtilis: 3 (14)
    Beta vulgaris: 1 (25)
    Bos taurus: 275 (3743)
    Caenorhabditis elegans: 66 (882)
    Canis familiaris: 112 (2820)
    Danio rerio: 105 (2708)
    Drosophila melanogaster: 35 (565)
    Escherichia coli: 13 (28)
    Equus caballus: 12 (200)
    Gallus gallus: 100 (2106)
    Glycine max: 1 (2)
    Gibberella zeae: 2 (0)
    Homo sapiens: 1153 (8326)
    Hordeum vulgare: 1 (9)
    Mus musculus: 227 (4985)
    Mycobacterium tuberculosis: 17 (148)
    Oryza sativa: 69 (493)
    Pan troglodytes: 116 (2937)
    Populus trichocarpa: 5 (0)
    Rattus norvegicus: 174 (3623)
    Saccharomyces cerevisiae: 135 (856)
    Solanum lycopersicum: 7 (5)
    Sus scrofa: 9 (65)
    Vitis vinifera: 1 (0)
    Zea mays: 58 (31)
    Plasmodium falciparum: 1 (0)
    Brassica napus: 2 (162)
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