WikiPathways

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<h2 class="frontPagePanel yellowFg">11 April 2019: Scheduled Downtime</h2>
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<font size=2>'''We will be taking the site down for an hour at 24:00UTC on April 11th. We are switching over to new and improved infrastructure! Sorry for any inconveniences.'''</font></div>
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<h2 class="frontPagePanel yellowFg">2015-Sep-01: Technical issues.</h2>
<h2 class="frontPagePanel yellowFg">2015-Sep-01: Technical issues.</h2>
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<font size=2>'''We are currently experiencing some technical issues, so some pages are not accessible. We are working hard to fix those issues. Sorry for any inconveniences.'''</font></div>-->
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<font size=2>'''We are currently experiencing some technical issues, so some pages are not accessible. We are working hard to fix those issues. Sorry for any inconveniences.'''</font></div>
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<h2 class="frontPagePanel yellowFg">WikiPathways is [https://medium.com/read-write-participate/biological-pathways-in-the-open-9afbce0d0f7e participating in MozSprint], May 10-11.</h2></div>  
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<h2 class="frontPagePanel redFg">Share your pathway knowledge in the fight against COVID-19</h2>  
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<font size=2>'''''ACCESS'' the rapidly growing [[Portal:Disease/COVIDPathways|collection of COVID-19 pathways]], ''CONTRIBUTE'' your time and domain knowledge about pathway biology as a [[Help:Authors|pathway author]], and ''USE'' these pathways in [[Help:Tools_using_WikiPathways|your research]].'''</font></div>  
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<h2 class="frontPagePanel yellowFg">The [https://academic.oup.com/nar/article/doi/10.1093/nar/gkx1064/4612963 2018 WikiPathways NAR Database paper] is online.</h2></div>
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<h2 class="frontPagePanel greenFg">Welcome to WikiPathways <sup>BETA</sup></h2>
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<h2 class="frontPagePanel greenFg">Welcome to WikiPathways</h2>
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<font size=2>'''WikiPathways is a database of biological pathways maintained by and for the scientific community.'''</font></div>
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<font size=2>'''WikiPathways is a database of biological pathways maintained by and for the scientific community.'''
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''Read about our 12-year journey so far and [[WikiPathways:ExitBeta_Announcement|official exit from beta]].''</font></div>
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<h2 class="frontPagePanel blueFg">Today's Featured Pathway</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:FeaturedPathway | true}}
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<h2 class="frontPagePanel blueFg">Today's Featured Pathway</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:CurrentHighlight | true}}
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<h2 class="frontPagePanel blueFg">Curator of the Week</h2><rss>https://wikipathways.github.io/academy/curators/curators_list.xml|max=1</rss>
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<h2 class="frontPagePanel blueFg">Curator of the Week</h2>{{#imgLink:Alexander_Pico.jpg‎‎‎|70|center|||http://www.wikipathways.org/index.php/User:AlexanderPico|Alexander Pico}} [http://www.wikipathways.org/index.php/User:AlexanderPico AlexanderPico(Gladstone Institutes)]
<h2 class="frontPagePanel blueFg" style="margin-top:0.5em;">Updates</h2>
<h2 class="frontPagePanel blueFg" style="margin-top:0.5em;">Updates</h2>
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* '''April 2018 Release''': total of 1,538 pathway models in 25 species, edits from 22 contributors and 8 new pathways
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* '''June 2020 Release''': [[Special:RecentPathwayChanges|215 edits]] by [[WikiPathways:Statistics#Contribution_scores|18 contributors]] and [[WikiPathways:NewPathwayReleases#June_2020|9 new pathways]]'''.
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* '''March 2018 Release''': 346 edits by 15 contributors, and 3 new pathways this month
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* '''May 2020 Release''': [[Special:RecentPathwayChanges|269 edits]] by [[WikiPathways:Statistics#Contribution_scores|16 contributors]] and [[WikiPathways:NewPathwayReleases#May_2020|18 new pathways]]'''.
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* '''February 2018 Release''': 247 edits by 10 contributors, and 5 new pathways this month
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* '''April 2020 Release''': [[Special:RecentPathwayChanges|427 edits]] by [[WikiPathways:Statistics#Contribution_scores|20 contributors]] and [[WikiPathways:NewPathwayReleases#April_2020|24 new pathways]], including many '''[[Portal:Disease/COVIDPathways|COVID-19 related pathways]]'''.
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* '''January 2018 Release''': 175 edits by 13 contributors, and 10 new pathways this month
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* March 23: Rapidly growing collcetion of [[Portal:Disease/COVIDPathways|COVID-19 related pathways]]
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* '''November 2017 Release''': 89 edits by 13 contributors, and 2 new pathways this month
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* '''March 2020 Release''': [[Special:RecentPathwayChanges|167 edits]] by [[WikiPathways:Statistics#Contribution_scores|27 contributors]] and [[WikiPathways:NewPathwayReleases#March_2020|9 new pathways]]
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* '''October 2017 Release''': 261 edits by 11 contributors, and 2 new pathways this month
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* '''February 2020 Release''': [[Special:RecentPathwayChanges|193 edits]] by [[WikiPathways:Statistics#Contribution_scores|24 contributors]] and [[WikiPathways:NewPathwayReleases#February_2020|3 new pathways]]
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* '''January 2020 Release''': [[Special:RecentPathwayChanges|96 edits]] by [[WikiPathways:Statistics#Contribution_scores|17 contributors]] and [[WikiPathways:NewPathwayReleases#January_2020|9 new pathways]]
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* '''December 2019 Release''': [[Special:RecentPathwayChanges|312 edits]] by [[WikiPathways:Statistics#Contribution_scores|19 contributors]] and [[WikiPathways:NewPathwayReleases#December_2019|3 new pathways]]
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* '''November 2019 Release''': [[Special:RecentPathwayChanges|172 edits]] by [[WikiPathways:Statistics#Contribution_scores|19 contributors]] and [[WikiPathways:NewPathwayReleases#November_2019|15 new pathways]]
&nbsp;&nbsp;&nbsp;&nbsp;[[WikiPathways:Updates|more...]]
&nbsp;&nbsp;&nbsp;&nbsp;[[WikiPathways:Updates|more...]]
<h2 class="frontPagePanel blueFg">Discussions</h2><recentChanges class="blueBg" style="border:none" namespace='90' limit='2'></recentChanges>&nbsp;&nbsp;&nbsp;&nbsp;[[WikiPathways:Discussions|more...]]
<h2 class="frontPagePanel blueFg">Discussions</h2><recentChanges class="blueBg" style="border:none" namespace='90' limit='2'></recentChanges>&nbsp;&nbsp;&nbsp;&nbsp;[[WikiPathways:Discussions|more...]]

Revision as of 04:55, 6 July 2020

Share your pathway knowledge in the fight against COVID-19

ACCESS the rapidly growing collection of COVID-19 pathways, CONTRIBUTE your time and domain knowledge about pathway biology as a pathway author, and USE these pathways in your research.

Welcome to WikiPathways

WikiPathways is a database of biological pathways maintained by and for the scientific community.

Read about our 12-year journey so far and official exit from beta.

Find Pathways

Search

Browse

Browse by species and category

You can search by:
  • Pathway name (Apoptosis)
  • Gene or protein name (p53)
  • Any page content (cancer)

Get Pathways

Download

Multiple formats and methods

Growth

New pathways added each month

Edit Pathways

Learn

Play with the editor tools

Convert

Queue figures for conversion

We want your feedback! A quick survey to help us focus development: https://www.surveymonkey.com/r/wikipathways


Today's Featured Pathway

SARS coronavirus and innate immunity (Homo sapiens)
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/a/af/WP4912_97347.svg:
Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/a/af/WP4912_97347.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'SARS coronaviru...', 'https://www.wik...', 'SARS coronaviru...', 'center', 'pwthumb', '300')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4912', '300', 'center', 'SARS coronaviru...', 'pathway', 'SARS coronaviru...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
  10. 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  12. 11 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{{Template:Toda...')
  13. 12 /var/www/wikipathways/includes/parser/Parser.php(439): Parser->internalParse('{{Template:Toda...')
  14. 13 /var/www/wikipathways/wpi/extensions/PathwayOfTheDay/PathwayOfTheDay.php(60): Parser->recursiveTagParse('{{Template:Toda...')
  15. 14 [internal function]: getPathwayOfTheDay(Object(Parser), 'Saturday 15 Aug...', 'Curation:Curren...', 'true')
  16. 15 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayOfThe...', Array)
  17. 16 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  18. 17 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  19. 18 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| ?<!-- Specia...')
  20. 19 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| ?<!-- Specia...')
  21. 20 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| ?<!-- Specia...', Object(Title), Object(ParserOptions), true, true, 111059)
  22. 21 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| ?<!-- Specia...', Object(Title), true, true)
  23. 22 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| ?<!-- Specia...', Object(Title), true)
  24. 23 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| ?<!-- Specia...')
  25. 24 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  26. 25 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  27. 26 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  28. 27 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  29. 28 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  30. 29 {main}

Curator of the Week

AlexanderPico(Gladstone Institutes)

Updates

    more...

Discussions

5 August 2020
Welcome! (20) by Marvin Martens
    more...

Forum

    Google group wikipathways-discuss


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