WikiPathways

From WikiPathways

(Difference between revisions)
Jump to: navigation, search
(updating monthly data release)
(updated curator of the week)
(58 intermediate revisions not shown.)
Line 17: Line 17:
<!-- ANNOUNCEMENTS -->
<!-- ANNOUNCEMENTS -->
-
<!--
 
|-valign="top" align="center"
|-valign="top" align="center"
-
|colspan="8"|<div class="frontPagePanel blueBg" style="width:95%;margin:1em;width=100%">
+
|colspan="8"|<div class="frontPagePanel redBg" style="width:95%;margin:1em;width=100%">
-
<h1 class="frontPagePanel redFg">To celebrate our 10th anniversary, a [https://gladstone.org/WP18Summit WikiPathways Summit] will be held from <b>8-10 Oct.</b> in San Francisco.</h1></div>  
+
<h2 class="frontPagePanel redFg">Share your pathway knowledge in the fight against COVID-19</h2>
-
-->
+
<font size=2>'''''ACCESS'' the rapidly growing [[Portal:Disease/COVIDPathways|collection of COVID-19 pathways]], ''CONTRIBUTE'' your time and domain knowledge about pathway biology as a [[Help:Authors|pathway author]], and ''USE'' these pathways in [[Help:Tools_using_WikiPathways|your research]].'''</font></div>  
-
 
+
<!-- Page Content -->
<!-- Page Content -->
|-valign="top"
|-valign="top"
|<div class="frontPagePanel greenBg" style="width:95%;margin:1em;width=100%">
|<div class="frontPagePanel greenBg" style="width:95%;margin:1em;width=100%">
-
<h2 class="frontPagePanel greenFg">Welcome to WikiPathways <sup>BETA</sup></h2>
+
<h2 class="frontPagePanel greenFg">Welcome to WikiPathways</h2>
-
<font size=2>'''WikiPathways is a database of biological pathways maintained by and for the scientific community.'''</font></div>
+
<font size=2>'''WikiPathways is a database of biological pathways maintained by and for the scientific community.'''
 +
''Read about our 12-year journey so far and [[WikiPathways:ExitBeta_Announcement|official exit from beta]].''</font></div>
<div class="frontPagePanel yellowBg" style="width:95%;margin:1em;width=100%">
<div class="frontPagePanel yellowBg" style="width:95%;margin:1em;width=100%">
Line 93: Line 92:
| valign="top"|
| valign="top"|
<div class="frontPagePanel blueBg" style="width:90%;margin:1em;width=100%;">
<div class="frontPagePanel blueBg" style="width:90%;margin:1em;width=100%;">
-
<h2 class="frontPagePanel blueFg">Today's Featured Pathway</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:FeaturedPathway | true}}
+
<h2 class="frontPagePanel blueFg">Today's Featured Pathway</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:CurrentHighlight | true}}
-
<h2 class="frontPagePanel blueFg">Curator of the Week</h2>{{#imgLink:Anders Riutta.jpg|70|center|||http://www.wikipathways.org/index.php/User:Ariutta|KAnders Riutta}} [http://www.wikipathways.org/index.php/User:Ariutta Anders Riutta (Gladstone Institutes)]
+
<h2 class="frontPagePanel blueFg">Curator of the Week</h2>{{#imgLink:Alexander_Pico.jpg‎‎‎|70|center|||http://www.wikipathways.org/index.php/User:AlexanderPico|Alexander Pico}} [http://www.wikipathways.org/index.php/User:AlexanderPico AlexanderPico(Gladstone Institutes)]
-
<h2 class="frontPagePanel blueFg">WikiPathways Summit Presentations</h2>{{#imgLink:wp18summit.png|180|center||external|https://www.youtube.com/playlist?list=PLZvyi4QVvMQOV4y0leoF19m-XjbSiNBbo|WP18Summit Videos}}
+
<h2 class="frontPagePanel blueFg" style="margin-top:0.5em;">Updates</h2>
<h2 class="frontPagePanel blueFg" style="margin-top:0.5em;">Updates</h2>
-
* '''October 2019 Release''': 728 edits by 16 contributors and 5 new pathways
+
* '''June 2020 Release''': [[Special:RecentPathwayChanges|215 edits]] by [[WikiPathways:Statistics#Contribution_scores|18 contributors]] and [[WikiPathways:NewPathwayReleases#June_2020|9 new pathways]]'''.
-
* '''September 2019 Release''': 905 edits by 15 contributors and 5 new pathways
+
* '''May 2020 Release''': [[Special:RecentPathwayChanges|269 edits]] by [[WikiPathways:Statistics#Contribution_scores|16 contributors]] and [[WikiPathways:NewPathwayReleases#May_2020|18 new pathways]]'''.
-
* '''August 2019 Release''': 416 edits by 13 contributors and 8 new pathways
+
* '''April 2020 Release''': [[Special:RecentPathwayChanges|427 edits]] by [[WikiPathways:Statistics#Contribution_scores|20 contributors]] and [[WikiPathways:NewPathwayReleases#April_2020|24 new pathways]], including many '''[[Portal:Disease/COVIDPathways|COVID-19 related pathways]]'''.
-
* '''July 2019 Release''': 284 edits by 21 contributors and 18 new pathways
+
* March 23: Rapidly growing collcetion of [[Portal:Disease/COVIDPathways|COVID-19 related pathways]]
-
* '''June 2019 Release''': 270 edits by 29 contributors and 4 new pathways
+
* '''March 2020 Release''': [[Special:RecentPathwayChanges|167 edits]] by [[WikiPathways:Statistics#Contribution_scores|27 contributors]] and [[WikiPathways:NewPathwayReleases#March_2020|9 new pathways]]
-
* '''May 2019 Release''': 243 edits by 23 contributors and 14 new pathways
+
* '''February 2020 Release''': [[Special:RecentPathwayChanges|193 edits]] by [[WikiPathways:Statistics#Contribution_scores|24 contributors]] and [[WikiPathways:NewPathwayReleases#February_2020|3 new pathways]]
-
* '''April 2019 Release''': 213 edits by 20 contributors and 17 new pathways
+
* '''January 2020 Release''': [[Special:RecentPathwayChanges|96 edits]] by [[WikiPathways:Statistics#Contribution_scores|17 contributors]] and [[WikiPathways:NewPathwayReleases#January_2020|9 new pathways]]
-
* '''March 2019 Release''': 336 edits by 24 contributors and 21 new pathways
+
* '''December 2019 Release''': [[Special:RecentPathwayChanges|312 edits]] by [[WikiPathways:Statistics#Contribution_scores|19 contributors]] and [[WikiPathways:NewPathwayReleases#December_2019|3 new pathways]]
 +
* '''November 2019 Release''': [[Special:RecentPathwayChanges|172 edits]] by [[WikiPathways:Statistics#Contribution_scores|19 contributors]] and [[WikiPathways:NewPathwayReleases#November_2019|15 new pathways]]
&nbsp;&nbsp;&nbsp;&nbsp;[[WikiPathways:Updates|more...]]
&nbsp;&nbsp;&nbsp;&nbsp;[[WikiPathways:Updates|more...]]
<h2 class="frontPagePanel blueFg">Discussions</h2><recentChanges class="blueBg" style="border:none" namespace='90' limit='2'></recentChanges>&nbsp;&nbsp;&nbsp;&nbsp;[[WikiPathways:Discussions|more...]]
<h2 class="frontPagePanel blueFg">Discussions</h2><recentChanges class="blueBg" style="border:none" namespace='90' limit='2'></recentChanges>&nbsp;&nbsp;&nbsp;&nbsp;[[WikiPathways:Discussions|more...]]

Revision as of 04:55, 6 July 2020

Share your pathway knowledge in the fight against COVID-19

ACCESS the rapidly growing collection of COVID-19 pathways, CONTRIBUTE your time and domain knowledge about pathway biology as a pathway author, and USE these pathways in your research.

Welcome to WikiPathways

WikiPathways is a database of biological pathways maintained by and for the scientific community.

Read about our 12-year journey so far and official exit from beta.

Find Pathways

Search

Browse

Browse by species and category

You can search by:
  • Pathway name (Apoptosis)
  • Gene or protein name (p53)
  • Any page content (cancer)

Get Pathways

Download

Multiple formats and methods

Growth

New pathways added each month

Edit Pathways

Learn

Play with the editor tools

Convert

Queue figures for conversion

We want your feedback! A quick survey to help us focus development: https://www.surveymonkey.com/r/wikipathways


Today's Featured Pathway

Type I Interferon Induction and Signaling During SARS-CoV-2 Infection (Homo sapiens)
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/b/b4/WP4868_107456.svg:
Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/b/b4/WP4868_107456.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Type I Interfer...', 'https://www.wik...', 'Type I Interfer...', 'center', 'pwthumb', '300')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4868', '300', 'center', 'Type I Interfer...', 'pathway', 'Type I Interfer...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
  10. 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  12. 11 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{{Template:Toda...')
  13. 12 /var/www/wikipathways/includes/parser/Parser.php(439): Parser->internalParse('{{Template:Toda...')
  14. 13 /var/www/wikipathways/wpi/extensions/PathwayOfTheDay/PathwayOfTheDay.php(60): Parser->recursiveTagParse('{{Template:Toda...')
  15. 14 [internal function]: getPathwayOfTheDay(Object(Parser), 'Wednesday 5 Aug...', 'Curation:Curren...', 'true')
  16. 15 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayOfThe...', Array)
  17. 16 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  18. 17 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  19. 18 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| ?<!-- Specia...')
  20. 19 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| ?<!-- Specia...')
  21. 20 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| ?<!-- Specia...', Object(Title), Object(ParserOptions), true, true, 111059)
  22. 21 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| ?<!-- Specia...', Object(Title), true, true)
  23. 22 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| ?<!-- Specia...', Object(Title), true)
  24. 23 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| ?<!-- Specia...')
  25. 24 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  26. 25 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  27. 26 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  28. 27 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  29. 28 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  30. 29 {main}

Curator of the Week

AlexanderPico(Gladstone Institutes)

Updates

    more...

Discussions

Today
Welcome! (20) by Marvin Martens
    more...

Forum

    Google group wikipathways-discuss


Personal tools