WikiPathways

From WikiPathways

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(updating curator of the week)
(updating curator of the week)
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<div class="frontPagePanel blueBg" style="width:90%;margin:1em;width=100%;">
<div class="frontPagePanel blueBg" style="width:90%;margin:1em;width=100%;">
<h2 class="frontPagePanel blueFg">Today's Featured Pathway</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:FeaturedPathway | true}}
<h2 class="frontPagePanel blueFg">Today's Featured Pathway</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:FeaturedPathway | true}}
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<h2 class="frontPagePanel blueFg">Curator of the Week</h2>{{#imgLink:Alexander_Pico.jpg‎‎‎‎‎|70|center|||http://www.wikipathways.org/index.php/User:AlexanderPico|Alexander Pico}} [http://www.wikipathways.org/index.php/User:AlexanderPico Alexander Pico (Gladstone Institutes)]
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<h2 class="frontPagePanel blueFg">Curator of the Week</h2>{{#imgLink:AndraWaagmeester.png‎‎‎‎‎‎|70|center|||http://www.wikipathways.org/index.php/User:Andra|Andra Waagmeester}} [http://www.wikipathways.org/index.php/User:Andra Andra Waagmeester (Gene Wiki)]
<h2 class="frontPagePanel blueFg">WikiPathways Summit Presentations</h2>{{#imgLink:wp18summit.png|180|center||external|https://www.youtube.com/playlist?list=PLZvyi4QVvMQOV4y0leoF19m-XjbSiNBbo|WP18Summit Videos}}
<h2 class="frontPagePanel blueFg">WikiPathways Summit Presentations</h2>{{#imgLink:wp18summit.png|180|center||external|https://www.youtube.com/playlist?list=PLZvyi4QVvMQOV4y0leoF19m-XjbSiNBbo|WP18Summit Videos}}
<h2 class="frontPagePanel blueFg" style="margin-top:0.5em;">Updates</h2>
<h2 class="frontPagePanel blueFg" style="margin-top:0.5em;">Updates</h2>

Revision as of 18:19, 8 July 2019

Welcome to WikiPathways BETA

WikiPathways is a database of biological pathways maintained by and for the scientific community.

Find Pathways

Search

Browse

Browse by species and category

You can search by:
  • Pathway name (Apoptosis)
  • Gene or protein name (p53)
  • Any page content (cancer)

Get Pathways

Download

Multiple formats and methods

Growth

New pathways added each month

Edit Pathways

Learn

Play with the editor tools

Convert

Queue figures for conversion

We want your feedback! A quick survey to help us focus development: https://www.surveymonkey.com/r/wikipathways


Today's Featured Pathway

Cholesterol Biosynthesis Pathway (Homo sapiens)
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/7/7c/WP197_prev.svg:
Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/7/7c/WP197_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Cholesterol Bio...', 'https://www.wik...', 'Cholesterol Bio...', 'center', 'pwthumb', '300')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP197', '300', 'center', 'Cholesterol Bio...', 'pathway', 'Cholesterol Bio...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
  10. 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  12. 11 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{{Template:Toda...')
  13. 12 /var/www/wikipathways/includes/parser/Parser.php(439): Parser->internalParse('{{Template:Toda...')
  14. 13 /var/www/wikipathways/wpi/extensions/PathwayOfTheDay/PathwayOfTheDay.php(60): Parser->recursiveTagParse('{{Template:Toda...')
  15. 14 [internal function]: getPathwayOfTheDay(Object(Parser), 'Wednesday 17 Ju...', 'Curation:Featur...', 'true')
  16. 15 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayOfThe...', Array)
  17. 16 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  18. 17 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  19. 18 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| ?<!-- Specia...')
  20. 19 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| ?<!-- Specia...')
  21. 20 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| ?<!-- Specia...', Object(Title), Object(ParserOptions), true, true, 105117)
  22. 21 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| ?<!-- Specia...', Object(Title), true, true)
  23. 22 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| ?<!-- Specia...', Object(Title), true)
  24. 23 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| ?<!-- Specia...')
  25. 24 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  26. 25 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  27. 26 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  28. 27 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  29. 28 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  30. 29 {main}

Curator of the Week

Andra Waagmeester (Gene Wiki)

WikiPathways Summit Presentations

Updates

  • May 2019 Release: 243 edits by 23 contributors and 14 new pathways
  • April 2019 Release: 213 edits by 20 contributors and 17 new pathways
  • March 2019 Release: 336 edits by 24 contributors and 21 new pathways
  • February 2019 Release: 282 edits by 22 contributors, and 9 new pathways
  • January 2019 Release: 281 edits by 11 contributors, and 8 new pathways
  • December 2018 Release: 202 edits from 11 contributors, and 7 new pathways

    more...

Discussions

8 July 2019
11b-HSD enzyme functions (3) by Claire Martin
5 July 2019
11b-HSD enzyme functions (2) by Denise Slenter
    more...

Forum

    Google group wikipathways-discuss


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