Portal:RareDisease/FeaturedPathways

From WikiPathways

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Current revision (13:19, 11 July 2019) (view source)
 
Line 55: Line 55:
|width=100px|{{#pwImage:Pathway:WP3853|250px||ERK Pathway in Huntington's Disease}}
|width=100px|{{#pwImage:Pathway:WP3853|250px||ERK Pathway in Huntington's Disease}}
|width=100px|{{#pwImage:Pathway:WP4657|250px||22q11.2 Deletion Syndrome}}
|width=100px|{{#pwImage:Pathway:WP4657|250px||22q11.2 Deletion Syndrome}}
 +
|width=100px|{{#pwImage:Pathway:WP4656|250px||Joubert Syndrome}}
|}
|}
Line 96: Line 97:
* [[Pathway:WP2059]] - Alzheimers Disease
* [[Pathway:WP2059]] - Alzheimers Disease
* [[Pathway:WP4657]] - 22q11.2 Deletion Syndrome
* [[Pathway:WP4657]] - 22q11.2 Deletion Syndrome
 +
* [[Pathway:WP4656]] - Joubert Syndrome

Current revision

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/a/a7/WP3584_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/a/a7/WP3584_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'MECP2 and Assoc...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP3584', '250px', , 'MECP2 and Assoc...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/5/56/WP2447_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/5/56/WP2447_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Amyotrophic lat...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP2447', '250px', , 'Amyotrophic lat...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/3/3c/WP3569_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/3/3c/WP3569_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Fanconi Anemia ...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP3569', '250px', , 'Fanconi Anemia ...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/6/69/WP4320_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/6/69/WP4320_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'The effect of p...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4320', '250px', , 'The effect of p...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/9/98/WP4299_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/9/98/WP4299_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Lamin A-process...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4299', '250px', , 'Lamin A-process...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/f/fd/WP4298_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/f/fd/WP4298_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Viral Acute Myo...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4298', '250px', , 'Viral Acute Myo...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/4/4b/WP4156_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/4/4b/WP4156_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Disorders of Ph...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4156', '250px', , 'Disorders of Ph...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/a/a3/WP4506_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/a/a3/WP4506_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Tyrosine Metabo...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4506', '250px', , 'Tyrosine Metabo...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/0/0e/WP4292_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/0/0e/WP4292_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Sulphur Amino A...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4292', '250px', , 'Sulphur Amino A...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/9/96/WP4259_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/9/96/WP4259_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Disorders of Fo...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4259', '250px', , 'Disorders of Fo...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/9/9f/WP4288_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/9/9f/WP4288_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'MTHFR deficienc...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4288', '250px', , 'MTHFR deficienc...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/9/9d/WP4228_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/9/9d/WP4228_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Vitamine B6-Dep...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4228', '250px', , 'Vitamine B6-Dep...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/7/7b/WP4507_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/7/7b/WP4507_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Molybdenum (Moc...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4507', '250px', , 'Molybdenum (Moc...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/c/c5/WP4504_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/c/c5/WP4504_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Cysteine and Me...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4504', '250px', , 'Cysteine and Me...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/4/4e/WP4271_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/4/4e/WP4271_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Vitamin B12 Dis...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4271', '250px', , 'Vitamin B12 Dis...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/e/e0/WP4297_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/e/e0/WP4297_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Thiamine Disord...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4297', '250px', , 'Thiamine Disord...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/8/8d/WP4236_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/8/8d/WP4236_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Disorders of th...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4236', '250px', , 'Disorders of th...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/c/cd/WP4153_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/c/cd/WP4153_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Lysosomal Stora...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4153', '250px', , 'Lysosomal Stora...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/9/91/WP4220_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/9/91/WP4220_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Neurotransmitte...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4220', '250px', , 'Neurotransmitte...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/e/ee/WP4224_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/e/ee/WP4224_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Purine Disorder...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4224', '250px', , 'Purine Disorder...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/b/b8/WP4225_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/b/b8/WP4225_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Pyrimidine Diso...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4225', '250px', , 'Pyrimidine Diso...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/0/0d/WP4540_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/0/0d/WP4540_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Pathways Regula...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4540', '250px', , 'Pathways Regula...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/7/7a/WP4541_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/7/7a/WP4541_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'po-Merlin Signa...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4541', '250px', , 'po-Merlin Signa...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/2/2b/WP4518_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/2/2b/WP4518_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Gamma-Glutamyl ...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4518', '250px', , 'Gamma-Glutamyl ...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/e/ec/WP4519_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/e/ec/WP4519_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Cerebral Organi...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4519', '250px', , 'Cerebral Organi...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/3/31/WP4521_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/3/31/WP4521_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Glycosylation a...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4521', '250px', , 'Glycosylation a...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/9/91/WP4522_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/9/91/WP4522_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Metabolic pathw...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4522', '250px', , 'Metabolic pathw...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/b/be/WP4523_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/b/be/WP4523_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Classical pathw...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4523', '250px', , 'Classical pathw...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/a/ac/WP4524_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/a/ac/WP4524_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'The alternative...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4524', '250px', , 'The alternative...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/7/7a/WP4549_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/7/7a/WP4549_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Fragile X Syndr...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4549', '250px', , 'Fragile X Syndr...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/7/73/WP4577_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/7/73/WP4577_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'WDR45 autophagy...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4577', '250px', , 'WDR45 autophagy...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/9/9f/WP4312_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/9/9f/WP4312_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Rett syndrome c...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4312', '250px', , 'Rett syndrome c...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/4/40/WP3995_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/4/40/WP3995_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Prion disease p...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP3995', '250px', , 'Prion disease p...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/7/71/WP4535_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/7/71/WP4535_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Envelope protei...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4535', '250px', , 'Envelope protei...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/a/a0/WP2371_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/a/a0/WP2371_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Parkinsons Dise...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP2371', '250px', , 'Parkinsons Dise...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/f/f9/WP2059_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/f/f9/WP2059_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Alzheimers Dise...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP2059', '250px', , 'Alzheimers Dise...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/3/33/WP3853_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/3/33/WP3853_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'ERK Pathway in ...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP3853', '250px', , 'ERK Pathway in ...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/c/c0/WP4657_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/c/c0/WP4657_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), '22q11.2 Deletio...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4657', '250px', , '22q11.2 Deletio...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/8/8e/WP4656_prev.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/8/8e/WP4656_prev.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Joubert Syndrom...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4656', '250px', , 'Joubert Syndrom...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 105147)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

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