Portal:Disease/COVIDPathways

From WikiPathways

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(New page: {| style="margin: 10px; background-color:#eaf2ee" |width=100px; cell padding=50px|{{#pwImage:Pathway:WP4846|250px||SARS-CoV-2 and COVID-19 Pathway}} |width=100px|{{#pwImage:Pathway:WP4853|...)
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{| style="margin: 10px; background-color:#eaf2ee"
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{| style="margin: 10px; background-color:#AFDCDE"
|width=100px; cell padding=50px|{{#pwImage:Pathway:WP4846|250px||SARS-CoV-2 and COVID-19 Pathway}}
|width=100px; cell padding=50px|{{#pwImage:Pathway:WP4846|250px||SARS-CoV-2 and COVID-19 Pathway}}
 +
Collaborative project for curation biological processes involved in the COVID-19 disease after SARS-Cov-2 infection.
|width=100px|{{#pwImage:Pathway:WP4853|250px||Coronavirus lipid metabolism}}
|width=100px|{{#pwImage:Pathway:WP4853|250px||Coronavirus lipid metabolism}}
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Lipid metabolism alternations that are related to infection by the corona virus.
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|-
|}
|}

Revision as of 23:59, 23 March 2020

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/2/2f/WP4846_109556.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/2/2f/WP4846_109556.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'SARS-CoV-2 and ...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4846', '250px', , 'SARS-CoV-2 and ...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 109556)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

Collaborative project for curation biological processes involved in the COVID-19 disease after SARS-Cov-2 infection.

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/d/d0/WP4853_109556.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/d/d0/WP4853_109556.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Coronavirus lip...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4853', '250px', , 'Coronavirus lip...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 109556)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

Lipid metabolism alternations that are related to infection by the corona virus.

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