Portal:Disease/COVIDPathways

From WikiPathways

(Difference between revisions)
Jump to: navigation, search
(Other coronaviruses: MERS, SARS-CoV-2, etc: removed deleted pathway)
(8 intermediate revisions not shown.)
Line 1: Line 1:
 +
__NOTOC__
{|style="margin: 10px;"
{|style="margin: 10px;"
  |width=800px|
  |width=800px|
<br/><big><font color="#407F7F" size="5">Welcome to the COVID-19 Pathway Collection</font></big><br/><br/>
<br/><big><font color="#407F7F" size="5">Welcome to the COVID-19 Pathway Collection</font></big><br/><br/>
<p>This special subset of disease pathways is being highlighted during the current COVID-19 crisis. This content is released under a CC0 waiver to be freely used, reused and distributed. Let us know if you add a new pathway or want to recommend one for this collection.</p>
<p>This special subset of disease pathways is being highlighted during the current COVID-19 crisis. This content is released under a CC0 waiver to be freely used, reused and distributed. Let us know if you add a new pathway or want to recommend one for this collection.</p>
 +
<p>The current list of authors and contributors of content of this portal: [[User:Fehrhart|Friederike Ehrhart]], [[User:AlexanderPico|Alex Pico]], [[User:Khanspers|Kristina Hanspers]], [[User:Amber|Amber Koning]], [[User:Rex_D_A_B|Rex D A B]], [[User:Penny|Penny Nymark]], [[User:DeSl|Denise Slenter]], [[User:C.F.Thorn|Caroline Thorn]], the Reactome project, [[User:Evelo|Chris Evelo]], [[User:L Dupuis|Lauren Dupuis]], [[User:Conroy_lipids|Matthew Conroy]], [[User:Mkutmon|Martina Kutmon]], [[User:Marvin M2|Marvin Martens]], and many more.</p>
 +
 +
<p>We also thank the authors of all the cited articles (recursively).</p>
{{#section:Help:Authors|covid-help}}
{{#section:Help:Authors|covid-help}}
 +
|{{#imgLink:Page1-601px-COVID19-Disease-Map-project-icon.pdf.jpg|230|right|Part of the <a href="https://covid.pages.uni.lu/">COVID-19 Disease Map</a> project<p>A paper about this project was published in <a href="http://dx.doi.org/10.1038/s41597-020-0477-8">Scientific Data</a>. </p>|external|https://covid.pages.uni.lu/|COVID19 Disease Map}}
|{{#imgLink:Page1-601px-COVID19-Disease-Map-project-icon.pdf.jpg|230|right|Part of the <a href="https://covid.pages.uni.lu/">COVID-19 Disease Map</a> project<p>A paper about this project was published in <a href="http://dx.doi.org/10.1038/s41597-020-0477-8">Scientific Data</a>. </p>|external|https://covid.pages.uni.lu/|COVID19 Disease Map}}
|}
|}
 +
 +
== SARS-CoV-2 Pathways ==
 +
{| style="margin: 10px; background-color:#AFDCDE"
{| style="margin: 10px; background-color:#AFDCDE"
|width=100px; cell padding=50px|{{#pwImage:Pathway:WP4846|250px||SARS-CoV-2 and COVID-19 Pathway}}
|width=100px; cell padding=50px|{{#pwImage:Pathway:WP4846|250px||SARS-CoV-2 and COVID-19 Pathway}}
Collaborative project for curation biological processes involved in the COVID-19 disease after SARS-Cov-2 infection.
Collaborative project for curation biological processes involved in the COVID-19 disease after SARS-Cov-2 infection.
-
|width=100px|{{#pwImage:Pathway:WP4853|250px||Coronavirus lipid metabolism}}
 
-
Lipid metabolism alternations that are related to infection by the corona virus.
 
|width=100px|{{#pwImage:Pathway:WP4860|250px||Hijack of Ubiquitination by SARS-CoV-2}}
|width=100px|{{#pwImage:Pathway:WP4860|250px||Hijack of Ubiquitination by SARS-CoV-2}}
SARS-CoV-2 includes a novel Orf10 that interacts with muliple members of the Cullin 2 ubiquitin ligase complex.
SARS-CoV-2 includes a novel Orf10 that interacts with muliple members of the Cullin 2 ubiquitin ligase complex.
-
|width=100px|{{#pwImage:Pathway:WP4862|250px||Autophagy during CoV infection}}
 
-
|-
 
-
|}
 
-
{| style="margin: 10px; background-color:#AFDCDE"
 
|width=100px|{{#pwImage:Pathway:WP4861|250px||Integrative stress response in SARS-CoV-2 infection}}
|width=100px|{{#pwImage:Pathway:WP4861|250px||Integrative stress response in SARS-CoV-2 infection}}
-
|width=100px|{{#pwImage:Pathway:WP4863|250px||Host-pathogen interaction of human corona viruses - autophagy}}
 
-
|width=100px|{{#pwImage:Pathway:WP4864|250px||Host-pathogen interaction of human corona viruses - apoptosis}}
 
|width=100px|{{#pwImage:Pathway:WP4868|250px||Type I Interferon Induction and Signaling During SARS-CoV-2 Infection}}
|width=100px|{{#pwImage:Pathway:WP4868|250px||Type I Interferon Induction and Signaling During SARS-CoV-2 Infection}}
The induction and signaling of type I interferon with specific SARS-CoV-2 protein and relevant drug.  
The induction and signaling of type I interferon with specific SARS-CoV-2 protein and relevant drug.  
Line 25: Line 25:
|}
|}
{| style="margin: 10px; background-color:#AFDCDE"
{| style="margin: 10px; background-color:#AFDCDE"
-
|width=100px|{{#pwImage:Pathway:WP4869|250px||Host-pathogen interaction of human corona viruses - ER stress}}
 
-
|width=100px|{{#pwImage:Pathway:WP4799|250px||Downregulation of ACE2 expression by SARS-CoV infection and SARS-CoV Spike protein}}
 
|width=100px|{{#pwImage:Pathway:WP4876|250px||Activation of NLRP3 Inflammasome by SARS-CoV-2}}
|width=100px|{{#pwImage:Pathway:WP4876|250px||Activation of NLRP3 Inflammasome by SARS-CoV-2}}
Orf3a from SARS-CoV has been shown to bind TRAF3 and activate the NLRP3 inflammasome.
Orf3a from SARS-CoV has been shown to bind TRAF3 and activate the NLRP3 inflammasome.
-
|width=100px|{{#pwImage:Pathway:WP4877|250px||Host-pathogen interaction of human corona viruses - MAPK signaling}}
 
-
|-
 
-
|}
 
-
{| style="margin: 10px; background-color:#AFDCDE"
 
-
|width=100px|{{#pwImage:Pathway:WP4880|250px||Host-pathogen interaction of human corona viruses - Interferon induction}}
 
|width=100px|{{#pwImage:Pathway:WP4883|250px||SARS-CoV-2 and Angiotensin-converting enzyme 2 (ACE2) receptor : Molecular mechanisms and potential therapeutic target}}
|width=100px|{{#pwImage:Pathway:WP4883|250px||SARS-CoV-2 and Angiotensin-converting enzyme 2 (ACE2) receptor : Molecular mechanisms and potential therapeutic target}}
|width=100px|{{#pwImage:Pathway:WP4891|250px||COVID-19 AOP}}
|width=100px|{{#pwImage:Pathway:WP4891|250px||COVID-19 AOP}}
Line 43: Line 36:
{| style="margin: 10px; background-color:#AFDCDE"
{| style="margin: 10px; background-color:#AFDCDE"
|width=100px|{{#pwImage:Pathway:WP4904|250px||LDLRAD4 pathway in COVID-19}}
|width=100px|{{#pwImage:Pathway:WP4904|250px||LDLRAD4 pathway in COVID-19}}
-
|width=100px|{{#pwImage:Pathway:WP4912|250px||SARS coronavirus and innate immunity}}
 
|width=100px|{{#pwImage:Pathway:WP4927|250px||COVID-19, thrombosis and anticoagulation}}
|width=100px|{{#pwImage:Pathway:WP4927|250px||COVID-19, thrombosis and anticoagulation}}
-
|width=100px|{{#pwImage:Pathway:WP4883|250px||SARS-CoV-2 and Angiotensin-converting enzyme 2 (ACE2) receptor: Molecular mechanisms and potential therapeutic target}}
 
|
|
|-
|-
|}
|}
 +
== Other coronaviruses: MERS, SARS-CoV-2, etc ==
 +
 +
{| style="margin: 10px; background-color:#AFDCDE"
 +
|width=100px|{{#pwImage:Pathway:WP4853|250px||Coronavirus lipid metabolism}}
 +
Lipid metabolism alternations that are related to infection by the corona virus.
 +
|width=100px|{{#pwImage:Pathway:WP4863|250px||Host-pathogen interaction of human corona viruses - autophagy}}
 +
|width=100px|{{#pwImage:Pathway:WP4864|250px||Host-pathogen interaction of human corona viruses - apoptosis}}
 +
|width=100px|{{#pwImage:Pathway:WP4912|250px||SARS coronavirus and innate immunity}}
 +
|-
 +
|}
 +
{| style="margin: 10px; background-color:#AFDCDE"
 +
|width=100px|{{#pwImage:Pathway:WP4869|250px||Host-pathogen interaction of human corona viruses - ER stress}}
 +
|width=100px|{{#pwImage:Pathway:WP4799|250px||Downregulation of ACE2 expression by SARS-CoV infection and SARS-CoV Spike protein}}
 +
|width=100px|{{#pwImage:Pathway:WP4877|250px||Host-pathogen interaction of human corona viruses - MAPK signaling}}
 +
|width=100px|{{#pwImage:Pathway:WP4880|250px||Host-pathogen interaction of human corona viruses - Interferon induction}}
 +
|-
 +
|}
== More about ACE2 ==
== More about ACE2 ==

Revision as of 19:04, 29 May 2020


Welcome to the COVID-19 Pathway Collection

This special subset of disease pathways is being highlighted during the current COVID-19 crisis. This content is released under a CC0 waiver to be freely used, reused and distributed. Let us know if you add a new pathway or want to recommend one for this collection.

The current list of authors and contributors of content of this portal: Friederike Ehrhart, Alex Pico, Kristina Hanspers, Amber Koning, Rex D A B, Penny Nymark, Denise Slenter, Caroline Thorn, the Reactome project, Chris Evelo, Lauren Dupuis, Matthew Conroy, Martina Kutmon, Marvin Martens, and many more.

We also thank the authors of all the cited articles (recursively).

Call to Action: COVID-19

We are helping to coordinate an international effort to build and curate pathway models relevant to the COVID-19 pandemic. Review the resources below to see how you can get involved.

IMPORTANT: WikiPathways is dedicated to FAIR standards. All content at WikiPathways is freely available for use and reuse by a CC0 waiver.

SARS-CoV-2 Pathways

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/a/ab/WP4846_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/a/ab/WP4846_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'SARS-CoV-2 and ...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4846', '250px', , 'SARS-CoV-2 and ...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

Collaborative project for curation biological processes involved in the COVID-19 disease after SARS-Cov-2 infection.

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/f/fb/WP4860_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/f/fb/WP4860_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Hijack of Ubiqu...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4860', '250px', , 'Hijack of Ubiqu...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

SARS-CoV-2 includes a novel Orf10 that interacts with muliple members of the Cullin 2 ubiquitin ligase complex.

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/b/b9/WP4861_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/b/b9/WP4861_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Integrative str...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4861', '250px', , 'Integrative str...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/8/89/WP4868_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/8/89/WP4868_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Type I Interfer...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4868', '250px', , 'Type I Interfer...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

The induction and signaling of type I interferon with specific SARS-CoV-2 protein and relevant drug.

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/c/c1/WP4876_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/c/c1/WP4876_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Activation of N...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4876', '250px', , 'Activation of N...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

Orf3a from SARS-CoV has been shown to bind TRAF3 and activate the NLRP3 inflammasome.

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/9/98/WP4883_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/9/98/WP4883_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'SARS-CoV-2 and ...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4883', '250px', , 'SARS-CoV-2 and ...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/0/0b/WP4891_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/0/0b/WP4891_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'COVID-19 AOP', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4891', '250px', , 'COVID-19 AOP')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

Experimental pathway to investigate overlap of virus-host interaction and adverse outcome pathways

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/a/a2/WP4884_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/a/a2/WP4884_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'nsp9/nsp10-medi...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4884', '250px', , 'nsp9/nsp10-medi...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

Virus-host interactome and proteomic survey of PMBCs from COVID-19 patients reveal potential virulence factors influencing SARS-CoV-2 pathogenesis

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/d/d4/WP4904_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/d/d4/WP4904_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'LDLRAD4 pathway...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4904', '250px', , 'LDLRAD4 pathway...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/7/74/WP4927_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/7/74/WP4927_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'COVID-19, throm...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4927', '250px', , 'COVID-19, throm...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

Other coronaviruses: MERS, SARS-CoV-2, etc

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/2/2f/WP4853_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/2/2f/WP4853_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Coronavirus lip...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4853', '250px', , 'Coronavirus lip...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

Lipid metabolism alternations that are related to infection by the corona virus.

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/2/27/WP4863_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/2/27/WP4863_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Host-pathogen i...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4863', '250px', , 'Host-pathogen i...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/6/6f/WP4864_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/6/6f/WP4864_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Host-pathogen i...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4864', '250px', , 'Host-pathogen i...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/7/78/WP4912_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/7/78/WP4912_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'SARS coronaviru...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4912', '250px', , 'SARS coronaviru...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/8/8a/WP4869_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/8/8a/WP4869_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Host-pathogen i...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4869', '250px', , 'Host-pathogen i...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/4/49/WP4799_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/4/49/WP4799_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Downregulation ...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4799', '250px', , 'Downregulation ...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/f/f6/WP4877_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/f/f6/WP4877_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Host-pathogen i...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4877', '250px', , 'Host-pathogen i...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/2/2a/WP4880_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/2/2a/WP4880_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Host-pathogen i...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4880', '250px', , 'Host-pathogen i...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

More about ACE2

invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/0/0a/WP554_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/0/0a/WP554_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'ACE Inhibitor P...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP554', '250px', , 'ACE Inhibitor P...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/b/bb/WP2729_110557.svg:


Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/b/bb/WP2729_110557.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Metabolism of A...', 'https://www.wik...', , , 'pwthumb', '250px')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP2729', '250px', , 'Metabolism of A...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  10. 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('?{|sty...')
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('?{|sty...')
  12. 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('?{|sty...', Object(Title), Object(ParserOptions), true, true, 110728)
  13. 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('?{|sty...', Object(Title), true, true)
  14. 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('?{|sty...', Object(Title), true)
  15. 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('?{|sty...')
  16. 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  17. 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
Personal tools