Polyol Pathway (Homo sapiens)

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(Removed licence number and last modified part.)
Current revision (12:09, 16 August 2019) (view source)
(HMDB identifier normalization)
 
Line 11: Line 11:
   <DataNode TextLabel="D-Sorbitol" GraphId="a02f1" Type="Metabolite">
   <DataNode TextLabel="D-Sorbitol" GraphId="a02f1" Type="Metabolite">
     <Graphics CenterX="389.34541577825166" CenterY="125.23809523809526" Width="80.0" Height="32.37313432835822" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
     <Graphics CenterX="389.34541577825166" CenterY="125.23809523809526" Width="80.0" Height="32.37313432835822" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB00247" />
+
     <Xref Database="HMDB" ID="HMDB0000247" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="D-Glucose" GraphId="a4027" Type="Metabolite">
   <DataNode TextLabel="D-Glucose" GraphId="a4027" Type="Metabolite">
     <Graphics CenterX="590.5024875621892" CenterY="125.42928216062546" Width="80.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
     <Graphics CenterX="590.5024875621892" CenterY="125.42928216062546" Width="80.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB00122" />
+
     <Xref Database="HMDB" ID="HMDB0000122" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Fructokinase" GraphId="a9883" Type="GeneProduct">
   <DataNode TextLabel="Fructokinase" GraphId="a9883" Type="GeneProduct">
Line 23: Line 23:
   <DataNode TextLabel="D-Fructose" GraphId="b29e5" Type="Metabolite">
   <DataNode TextLabel="D-Fructose" GraphId="b29e5" Type="Metabolite">
     <Graphics CenterX="388.90728500355374" CenterY="220.25554371002133" Width="80.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
     <Graphics CenterX="388.90728500355374" CenterY="220.25554371002133" Width="80.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB00660" />
+
     <Xref Database="HMDB" ID="HMDB0000660" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="ALDOB" GraphId="b6834" Type="GeneProduct">
   <DataNode TextLabel="ALDOB" GraphId="b6834" Type="GeneProduct">
Line 31: Line 31:
   <DataNode TextLabel="Dihydroxyacetone phosphate" GraphId="bd923" Type="Metabolite">
   <DataNode TextLabel="Dihydroxyacetone phosphate" GraphId="bd923" Type="Metabolite">
     <Graphics CenterX="302.9239516702204" CenterY="417.272210376688" Width="158.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
     <Graphics CenterX="302.9239516702204" CenterY="417.272210376688" Width="158.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB01473" />
+
     <Xref Database="HMDB" ID="HMDB0001473" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Glyceraldehyde" GraphId="c05e7" Type="Metabolite">
   <DataNode TextLabel="Glyceraldehyde" GraphId="c05e7" Type="Metabolite">
     <Graphics CenterX="470.9239516702204" CenterY="417.272210376688" Width="80.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
     <Graphics CenterX="470.9239516702204" CenterY="417.272210376688" Width="80.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB01051" />
+
     <Xref Database="HMDB" ID="HMDB0001051" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="ALR2" GraphId="c43b6" Type="GeneProduct">
   <DataNode TextLabel="ALR2" GraphId="c43b6" Type="GeneProduct">
Line 47: Line 47:
   <DataNode TextLabel="Fructose 1-phosphate" GraphId="e285c" Type="Metabolite">
   <DataNode TextLabel="Fructose 1-phosphate" GraphId="e285c" Type="Metabolite">
     <Graphics CenterX="387.9239516702204" CenterY="312.272210376688" Width="112.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
     <Graphics CenterX="387.9239516702204" CenterY="312.272210376688" Width="112.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB01076" />
+
     <Xref Database="HMDB" ID="HMDB0001076" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Glycolysis" GraphId="e91ea" Type="Pathway">
   <DataNode TextLabel="Glycolysis" GraphId="e91ea" Type="Pathway">
Line 59: Line 59:
   <DataNode TextLabel="D-Glyceraldehyde 3-phosphate" GraphId="f6cd9" Type="Metabolite">
   <DataNode TextLabel="D-Glyceraldehyde 3-phosphate" GraphId="f6cd9" Type="Metabolite">
     <Graphics CenterX="387.9239516702204" CenterY="509.272210376688" Width="160.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
     <Graphics CenterX="387.9239516702204" CenterY="509.272210376688" Width="160.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB01112" />
+
     <Xref Database="HMDB" ID="HMDB0001112" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Glycolysis" GraphId="fa8dc" Type="Pathway">
   <DataNode TextLabel="Glycolysis" GraphId="fa8dc" Type="Pathway">
Line 211: Line 211:
   <InfoBox CenterX="0.0" CenterY="0.0" />
   <InfoBox CenterX="0.0" CenterY="0.0" />
   <Biopax>
   <Biopax>
-
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 
-
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">glucose oxidation pathway</bp:TERM>
 
-
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000556</bp:ID>
 
-
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
 
-
    </bp:openControlledVocabulary>
 
-
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 
-
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">glucose utilization pathway</bp:TERM>
 
-
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000555</bp:ID>
 
-
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
 
-
    </bp:openControlledVocabulary>
 
-
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 
-
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">polyol pathway</bp:TERM>
 
-
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0001520</bp:ID>
 
-
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
 
-
    </bp:openControlledVocabulary>
 
-
    <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="ccc">
 
-
      <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">10997684</bp:ID>
 
-
      <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB>
 
-
      <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Aldose reductase and the role of the polyol pathway in diabetic nephropathy.</bp:TITLE>
 
-
      <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Kidney Int Suppl</bp:SOURCE>
 
-
      <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2000</bp:YEAR>
 
-
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dunlop M</bp:AUTHORS>
 
-
    </bp:PublicationXref>
 
     <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
     <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
       <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Diabetes</bp:TERM>
       <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Diabetes</bp:TERM>
Line 260: Line 237:
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Tolan DR</bp:AUTHORS>
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Tolan DR</bp:AUTHORS>
     </bp:PublicationXref>
     </bp:PublicationXref>
 +
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 +
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">glucose utilization pathway</bp:TERM>
 +
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000555</bp:ID>
 +
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
 +
    </bp:openControlledVocabulary>
 +
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 +
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">polyol pathway</bp:TERM>
 +
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0001520</bp:ID>
 +
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
 +
    </bp:openControlledVocabulary>
 +
    <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="ccc">
 +
      <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">10997684</bp:ID>
 +
      <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB>
 +
      <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Aldose reductase and the role of the polyol pathway in diabetic nephropathy.</bp:TITLE>
 +
      <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Kidney Int Suppl</bp:SOURCE>
 +
      <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2000</bp:YEAR>
 +
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dunlop M</bp:AUTHORS>
 +
    </bp:PublicationXref>
 +
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 +
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">glucose oxidation pathway</bp:TERM>
 +
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000556</bp:ID>
 +
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
 +
    </bp:openControlledVocabulary>
   </Biopax>
   </Biopax>
</Pathway>
</Pathway>

Current revision

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
106197view12:09, 16 August 2019MaintBotHMDB identifier normalization
102327view09:57, 20 December 2018DeSlRemoved licence number and last modified part.
102326view09:54, 20 December 2018DeSlUpdated arrows to Mim-type conversion
102325view09:53, 20 December 2018DeSlAdded D-sorbitol to isosorbid path
88335view15:56, 1 August 2016FehrhartOntology Term : 'polyol pathway' added !
72132view07:58, 25 October 2013Mkutmonadded datasource to pathway datanode
70029view01:55, 12 July 2013AlexanderPicoFixed pathway xref
70028view01:54, 12 July 2013AlexanderPicoModified title
68946view17:36, 8 July 2013MaintBotUpdated to 2013 gpml schema
67602view11:31, 26 June 2013DdiglesOntology Term : 'glucose utilization pathway' added !
59138view22:38, 21 February 2013MaintBotUpdated Ensembl and UniProt data source
45266view18:46, 7 October 2011KhanspersOntology Term : 'Diabetes' added !
45264view18:46, 7 October 2011KhanspersOntology Term : 'renal disease, renal disorder pathway' added !
45260view18:44, 7 October 2011KhanspersOntology Term : 'glucose oxidation pathway' added !
41098view23:21, 1 March 2011MaintBotRemoved redundant pathway information and comments
38770view23:43, 23 September 2010KhanspersAdded pathway links and changed line types
32727view22:46, 3 September 2009MaintBotModified categories
29659view07:35, 25 May 2009Pieter GiesbertzAdded literature reference
29654view09:43, 24 May 2009Pieter GiesbertzModified description
29592view12:33, 19 May 2009Pieter GiesbertzModified description
29289view08:24, 22 April 2009Pieter GiesbertzAdded literature references
29288view08:09, 22 April 2009Pieter GiesbertzSpecify description
29281view07:39, 22 April 2009Pieter GiesbertzSpecify description
29132view11:33, 6 April 2009Pieter GiesbertzSpecify description
29115view14:54, 3 April 2009Pieter GiesbertzNew pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/d/da/WP690_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/d/da/WP690_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 106197)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
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