FAS pathway and Stress induction of HSP regulation (Mus musculus)

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Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
109410view18:17, 16 March 2020L DupuisFixed interactions
109379view15:24, 16 March 2020L DupuisConverted interactions to graphical lines
106905view13:38, 17 September 2019MaintBotHMDB identifier normalization
71736view20:17, 17 October 2013MaintBotAutomated update of data sources
69119view18:14, 8 July 2013MaintBotUpdated to 2013 gpml schema
67223view10:23, 26 June 2013Christine ChichesterOntology Term : 'FasL mediated signaling pathway' added !
47743view19:15, 5 April 2012Thomasfixed wrongly annotated gene
41305view00:23, 2 March 2011MaintBotRemoved redundant pathway information and comments
38241view21:19, 27 August 2010KhanspersRemoved receptor and protein complex graphics
38240view21:18, 27 August 2010KhanspersReverted to version '15:06, 12 February 2010' by Khanspers
38190view00:29, 24 August 2010Khanspers
35565view15:06, 12 February 2010Thomasadded literature
35560view15:01, 12 February 2010ThomasModified description
34390view22:52, 9 December 2009MaintBotAutomatic update of empty xrefs
32872view22:02, 16 September 2009MaintBotNA
32468view17:29, 15 August 2009MaintBotFixed text labels
32154view14:02, 14 August 2009MaintBotFixed group labels
31479view21:23, 13 August 2009MaintBotFixed text labels
30859view00:10, 30 July 2009MaintBotConverted from Homo sapiens
21882view11:32, 14 November 2008MaintBot[[Pathway:Mus musculus:Fas Pathway and Stress Induction of HSP Regulation Biocarta]] moved to [[Pathway:WP571]]: Moved to stable identifier
8018view13:46, 7 January 2008MaintBot[[Pathway:Mouse:Fas Pathway and Stress Induction of HSP Regulation Biocarta]] moved to [[Pathway:Mus musculus:Fas Pathway and Stress Induction of HSP Regulation Biocarta]]: Renaming species
7632view16:06, 18 December 2007MaintBotfixed category names
7220view12:41, 4 November 2007MaintBotAdded categories to GPML
6436view22:18, 22 May 2007169.230.77.174gpml file for [[Mouse:Fas_Pathway_and_Stress_Induction_of_HSP_Regulation_Biocarta]]

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/0/0b/WP571_38190.svg:
<BR>Status:254
<BR>Message:[     0.553] Info:  Recognized format [Namespace: prefix "" is mapped to URI "http://genmapp.org/GPML/2008a"]
Error: Document is invalid according to the xml-schema definition!: Exception in startElement: cvc-id.2: There are multiple occurrences of ID value 'df6'.
	org.jdom.JDOMException: Exception in startElement: cvc-id.2: There are multiple occurrences of ID value 'df6'.: Exception in startElement: cvc-id.2: There are multiple occurrences of ID value 'df6'.
Error: The invalid XML code:
<?xml version="1.0" encoding="UTF-8"?>
<Pathway xmlns="http://genmapp.org/GPML/2008a" Name="FAS pathway and Stress induction of HSP regulation" Data-Source="GenMAPP 2.0" Version="20041216" Author="Adapted from BioCarta by Sebastien Burel" Email="sburel@neurocrine.com" Last-Modified="12/9/2009" Organism="Mus musculus">
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  <Comment Source="HomologyConvert">This pathway was inferred from Homo sapiens pathway [http://www.wikipathways.org/index.php?title=Pathway:WP314&amp;amp;amp;oldid=21341 WP314(r21341)] with a 94% conversion rate.</Comment>
  <Comment Source="WikiPathways-description">This pathway describes the Fas induced apoptosis and interplay with Hsp27 in response to stress.

More info: [http://www.biocarta.com/pathfiles/h_hsp27Pathway.asp BioCarta].</Comment>
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  <Line Style="Solid" GraphId="e09fe">
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      <Point x="4900.0" y="3010.0" GraphRef="e00" relX="0.5" relY="-1.0" />
      <Point x="4900.0" y="2715.0" GraphRef="c81" relX="-0.5" relY="1.0" ArrowHead="TBar" />
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  </Line>
  <Line Style="Solid" GraphId="d94bd">
    <Graphics ZOrder="12288" Color="0000ff">
      <Point x="15515.0" y="7095.0" GraphRef="b2c" relX="-0.5714285714285714" relY="-1.3333333333333333" />
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  </Line>
  <Line Style="Solid" GraphId="ba9cb">
    <Graphics ConnectorType="Elbow" ZOrder="12288" Color="000000">
      <Point x="4000.0" y="6100.0" GraphRef="ae2" relX="1.0" relY="0.0" />
      <Point x="4500.0" y="8450.0" GraphRef="f54" relX="0.0" relY="-1.0" ArrowHead="Arrow" />
    </Graphics>
  </Line>
  <Line Style="Solid" GraphId="a3823">
    <Graphics ConnectorType="Elbow" ZOrder="12288" Color="000000">
      <Point x="9800.0" y="3600.0" GraphRef="d4a" relX="1.0" relY="0.0" />
      <Point x="10840.0" y="4021.866666666667" />
      <Point x="10828.4" y="4443.733333333334" GraphRef="d1f03" relX="0.0" relY="0.0" />
      <Anchor position="0.4" Shape="None" GraphId="f3d26" />
    </Graphics>
  </Line>
  <Line Style="Solid" GraphId="d7870">
    <Graphics ConnectorType="Elbow" ZOrder="12288" Color="000000">
      <Point x="9630.0" y="3240.0" GraphRef="bc2" relX="1.0" relY="0.0" />
      <Point x="11040.0" y="3843.0" />
      <Point x="11046.0" y="4446.0" GraphRef="c5991" relX="0.0" relY="0.0" />
      <Anchor position="0.7522586935326613" Shape="None" GraphId="cf9a3" />
    </Graphics>
  </Line>
  <Label TextLabel="Stress" GraphId="efb">
    <Graphics FontWeight="Bold" FontSize="180" Color="0000ff" CenterX="14345.0" CenterY="1060.0" Width="815.0" Height="285.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="Mitochondria Pathway" GraphId="e8b">
    <Graphics FontWeight="Bold" FontSize="135" Color="000000" CenterX="14750.0" CenterY="3150.0" Width="1970.0" Height="225.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="Apoptosome" GraphId="ea6">
    <Graphics FontWeight="Bold" FontSize="120" Color="0000ff" CenterX="15405.0" CenterY="6110.0" Width="995.0" Height="180.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="Proteasome" GraphId="a5e">
    <Graphics FontWeight="Bold" FontSize="180" Color="000000" CenterX="10020.0" CenterY="6720.0" Width="1460.0" Height="285.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="NFK-B Pathway
" GraphId="ff8">
    <Graphics FontWeight="Bold" FontSize="150" Color="008000" CenterX="12178.75" CenterY="6720.0" Width="1142.5" Height="240.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="ROS" GraphId="f24">
    <Graphics FontWeight="Bold" FontSize="180" Color="ff0000" CenterX="12800.0" CenterY="2950.0" Width="605.0" Height="285.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="Cell Survival" GraphId="fa1">
    <Graphics FontWeight="Bold" FontSize="150" Color="0000ff" CenterX="11890.0" CenterY="7590.0" Width="1295.0" Height="240.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="Necrosis" GraphId="dac">
    <Graphics FontWeight="Bold" FontSize="150" Color="0000ff" CenterX="12650.0" CenterY="4540.0" Width="875.0" Height="240.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="Apoptosis" GraphId="ec7">
    <Graphics FontWeight="Bold" FontSize="210" Color="0000ff" CenterX="7300.0" CenterY="11350.0" Width="1400.0" Height="315.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="FAS Pathway" GraphId="cab">
    <Graphics FontWeight="Bold" FontStyle="Italic" FontSize="210" Color="0000ff" CenterX="3700.0" CenterY="650.0" Width="1790.0" Height="315.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="3x-P" GraphId="eff">
    <Graphics FontWeight="Bold" FontSize="90" Color="ff0000" CenterX="8600.0" CenterY="4350.0" Width="320.0" Height="150.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="3x-P" GraphId="ffc">
    <Graphics FontWeight="Bold" FontSize="90" Color="ff0000" CenterX="10000.0" CenterY="4200.0" Width="320.0" Height="150.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="3x-P" GraphId="e19">
    <Graphics FontWeight="Bold" FontSize="90" Color="ff0000" CenterX="10200.0" CenterY="5000.0" Width="320.0" Height="150.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="DNA presentation" GraphId="a7d">
    <Graphics FontWeight="Bold" FontSize="150" Color="0000ff" CenterX="4500.0" CenterY="10120.0" Width="1730.0" Height="240.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="Extracellular" GraphId="a4c">
    <Graphics FontWeight="Bold" FontStyle="Italic" FontSize="150" Color="000000" CenterX="900.0" CenterY="1750.0" Width="1250.0" Height="240.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="Cytoplasm" GraphId="fff">
    <Graphics FontWeight="Bold" FontStyle="Italic" FontSize="150" Color="000000" CenterX="800.0" CenterY="2250.0" Width="1055.0" Height="240.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="Nucleus" GraphId="ec5">
    <Graphics FontWeight="Bold" FontStyle="Italic" FontSize="150" Color="000000" CenterX="3400.0" CenterY="11700.0" Width="815.0" Height="240.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="Stress Induction of HSP regulation" GraphId="ec3">
    <Graphics FontWeight="Bold" FontStyle="Italic" FontSize="210" Color="0000ff" CenterX="11950.0" CenterY="650.0" Width="4535.0" Height="315.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="Cut" GraphId="f84">
    <Graphics FontWeight="Bold" FontSize="150" Color="ff00ff" CenterX="10750.0" CenterY="10450.0" Width="395.0" Height="240.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="Inhibition" GraphId="fa7">
    <Graphics FontWeight="Bold" FontSize="150" Color="ff0000" CenterX="11050.0" CenterY="10850.0" Width="980.0" Height="240.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="Activate" GraphId="e63">
    <Graphics FontWeight="Bold" FontSize="150" Color="000000" CenterX="11000.0" CenterY="11250.0" Width="845.0" Height="240.0" ZOrder="28672" />
  </Label>
  <Label TextLabel="Self-activation" GraphId="b57">
    <Graphics FontWeight="Bold" FontSize="150" Color="0000ff" CenterX="11250.0" CenterY="11600.0" Width="1445.0" Height="240.0" ZOrder="28672" />
  </Label>
  <Shape Type="Oval" Style="Solid" GraphId="bde">
    <Graphics FillColor="Transparent" Color="000000" CenterX="14750.0" CenterY="3150.0" Width="2200.0" Height="700.0" ZOrder="16384" Rotation="0.0" />
  </Shape>
  <Shape Type="ProteinComplex" Style="Solid" GraphId="bb5">
    <Graphics FillColor="Transparent" Color="000000" CenterX="3800.0" CenterY="1450.0" Width="352.9412" Height="0.0" ZOrder="16384" Rotation="0.0" />
  </Shape>
  <Shape Type="Oval" Style="Solid" GraphId="c3f">
    <Graphics FillColor="Transparent" Color="000000" CenterX="3550.0" CenterY="9700.0" Width="7000.0" Height="4501.11" ZOrder="16384" Rotation="0.0" />
  </Shape>
  <Shape Type="Rectangle" Style="Solid" GraphId="f12">
    <Graphics FillColor="Transparent" Color="000000" CenterX="10700.0" CenterY="11050.0" Width="2901.724" Height="1600.0" ZOrder="16384" Rotation="0.0" />
  </Shape>
  <Group GroupId="d8cbe" GraphId="cd568" />
  <Group GroupId="f83c9" GraphId="ea87a" />
  <Group GroupId="cf372" GraphId="e2ea3" />
  <Group GroupId="cd34f" GraphId="fd904" />
  <Group GroupId="b09cd" GraphId="e3700" />
  <Group GroupId="af542" GraphId="ccb2c" />
  <Group GroupId="fa0db" GraphId="b4a68" />
  <Group GroupId="a0cef" GraphId="a8164" />
  <Group GroupId="a8427" GraphId="bc10f" />
  <Group GroupId="b0a88" GraphId="d8250" />
  <InfoBox CenterX="11225.0" CenterY="8775.0" />
  <Legend CenterX="12625.0" CenterY="8525.0" />
  <Biopax>
    <bp:PublicationXRef xmlns:bp="http://www.biopax.org/release/biopax-level2.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="c79">
      <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">10914538</bp:ID>
      <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB>
      <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Heat shock proteins--modulators of apoptosis in tumour cells.</bp:TITLE>
      <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Leukemia</bp:SOURCE>
      <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2000</bp:YEAR>
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Creagh EM</bp:AUTHORS>
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Sheehan D</bp:AUTHORS>
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Cotter TG</bp:AUTHORS>
    </bp:PublicationXRef>
  </Biopax>
</Pathway>


org.pathvisio.core.model.ConverterException: class org.pathvisio.core.model.ConverterException: class org.jdom.JDOMException: Exception in startElement: cvc-id.2: There are multiple occurrences of ID value 'df6'.
	at org.jdom.output.SAXOutputter.startElement(SAXOutputter.java:1030)
	at org.jdom.output.SAXOutputter.element(SAXOutputter.java:894)
	at org.jdom.output.SAXOutputter.elementContent(SAXOutputter.java:1097)
	at org.jdom.output.SAXOutputter.elementContent(SAXOutputter.java:1069)
	at org.jdom.output.SAXOutputter.element(SAXOutputter.java:897)
	at org.jdom.output.SAXOutputter.output(SAXOutputter.java:621)
	at org.pathvisio.core.model.GpmlFormatAbstract.validateDocument(Unknown Source)
	at org.pathvisio.core.model.GpmlFormat.readFromXmlImpl(Unknown Source)
	at org.pathvisio.core.model.GpmlFormat.readFromXml(Unknown Source)
	at org.pathvisio.core.model.GpmlFormat.doImport(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)
Caused by: org.pathvisio.core.model.ConverterException: class org.jdom.JDOMException: Exception in startElement: cvc-id.2: There are multiple occurrences of ID value 'df6'.
	... 12 more
Caused by: org.jdom.JDOMException: Exception in startElement: cvc-id.2: There are multiple occurrences of ID value 'df6'.
	... 12 more
Caused by: org.xml.sax.SAXParseException; cvc-id.2: There are multiple occurrences of ID value 'df6'.
	at org.apache.xerces.util.ErrorHandlerWrapper.createSAXParseException(Unknown Source)
	at org.apache.xerces.util.ErrorHandlerWrapper.error(Unknown Source)
	at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)
	at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)
	at org.apache.xerces.impl.XMLErrorReporter.reportError(Unknown Source)
	at org.apache.xerces.impl.xs.XMLSchemaValidator$XSIErrorReporter.reportError(Unknown Source)
	at org.apache.xerces.impl.xs.XMLSchemaValidator.reportSchemaError(Unknown Source)
	at org.apache.xerces.impl.xs.XMLSchemaValidator.processOneAttribute(Unknown Source)
	at org.apache.xerces.impl.xs.XMLSchemaValidator.processAttributes(Unknown Source)
	at org.apache.xerces.impl.xs.XMLSchemaValidator.handleStartElement(Unknown Source)
	at org.apache.xerces.impl.xs.XMLSchemaValidator.startElement(Unknown Source)
	at org.apache.xerces.jaxp.validation.ValidatorHandlerImpl.startElement(Unknown Source)
	at org.jdom.output.SAXOutputter.startElement(SAXOutputter.java:1027)
	... 11 more

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways/images/b/bb/WP571_38190.gpml" "/var/www/wikipathways/images/0/0b/WP571_38190.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio('/var/www/wikipa...', '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/Article.php(3406): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 38190)
#7 /var/www/wikipathways/includes/Article.php(875): Article->outputWikiText('<?xml version="...', false)
#8 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#9 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#10 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#11 {main}
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