Glycolysis and Gluconeogenesis (Homo sapiens)

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(Modified description)
(HMDB identifier normalization)
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This pathway is part the [https://assays.cancer.gov/available_assays?wp_id=WP534 CPTAC Assay Portal].</Comment>
This pathway is part the [https://assays.cancer.gov/available_assays?wp_id=WP534 CPTAC Assay Portal].</Comment>
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   <Comment Source="GenMAPP notes"/>
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   <Comment Source="GenMAPP notes"></Comment>
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   <Comment Source="GenMAPP remarks"/>
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   <Comment Source="GenMAPP remarks"></Comment>
   <Comment Source="WikiPathways-category">Metabolic Process</Comment>
   <Comment Source="WikiPathways-category">Metabolic Process</Comment>
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     <Graphics CenterX="120.0" CenterY="1259.8139534883705" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="3939"/>
+
     <Xref Database="Entrez Gene" ID="3939" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Fructose-1,6BP" GraphId="cafe6" Type="Metabolite">
   <DataNode TextLabel="Fructose-1,6BP" GraphId="cafe6" Type="Metabolite">
-
     <Graphics CenterX="271.0" CenterY="664.147286821704" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff"/>
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     <Graphics CenterX="271.0" CenterY="664.147286821704" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB01058"/>
+
     <Xref Database="HMDB" ID="HMDB0001058" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="HK1" GraphId="cc85c" Type="GeneProduct" GroupRef="fda36">
   <DataNode TextLabel="HK1" GraphId="cc85c" Type="GeneProduct" GroupRef="fda36">
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Hk1"/>
+
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Hk1" />
-
     <Graphics CenterX="149.2212885154063" CenterY="251.6778711484591" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
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     <Graphics CenterX="149.2212885154063" CenterY="251.6778711484591" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="3098"/>
+
     <Xref Database="Entrez Gene" ID="3098" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Lactate" GraphId="d069e" Type="Metabolite">
   <DataNode TextLabel="Lactate" GraphId="d069e" Type="Metabolite">
-
     <Graphics CenterX="245.963305322129" CenterY="1328.3094716956548" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff"/>
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     <Graphics CenterX="245.963305322129" CenterY="1328.3094716956548" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB00190"/>
+
     <Xref Database="HMDB" ID="HMDB0000190" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="SLC2A1" GraphId="d1551" Type="GeneProduct" GroupRef="c8496">
   <DataNode TextLabel="SLC2A1" GraphId="d1551" Type="GeneProduct" GroupRef="c8496">
-
     <Graphics CenterX="416.0" CenterY="125.65546218487401" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
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     <Graphics CenterX="416.0" CenterY="125.65546218487401" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="6513"/>
+
     <Xref Database="Entrez Gene" ID="6513" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="PGAM2" GraphId="d214c" Type="GeneProduct" GroupRef="cbc7d">
   <DataNode TextLabel="PGAM2" GraphId="d214c" Type="GeneProduct" GroupRef="cbc7d">
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Pgam2"/>
+
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Pgam2" />
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     <Graphics CenterX="143.00000000000006" CenterY="973.4806201550373" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
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     <Graphics CenterX="143.00000000000006" CenterY="973.4806201550373" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="5224"/>
+
     <Xref Database="Entrez Gene" ID="5224" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="DLAT" GraphId="d6e73" Type="GeneProduct" GroupRef="e1a06">
   <DataNode TextLabel="DLAT" GraphId="d6e73" Type="GeneProduct" GroupRef="e1a06">
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Dlat"/>
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Dlat" />
-
     <Graphics CenterX="727.5000000000001" CenterY="1382.147286821704" Width="63.666666666666664" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
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     <Graphics CenterX="727.5000000000001" CenterY="1382.147286821704" Width="63.666666666666664" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="1737"/>
+
     <Xref Database="Entrez Gene" ID="1737" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="PFKL" GraphId="d9169" Type="GeneProduct" GroupRef="c903d">
   <DataNode TextLabel="PFKL" GraphId="d9169" Type="GeneProduct" GroupRef="c903d">
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Pfkl"/>
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Pfkl" />
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     <Graphics CenterX="147.66666666666674" CenterY="619.8139534883704" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
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     <Graphics CenterX="147.66666666666674" CenterY="619.8139534883704" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="5211"/>
+
     <Xref Database="Entrez Gene" ID="5211" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Glucose" GraphId="d9df3" Type="Metabolite">
   <DataNode TextLabel="Glucose" GraphId="d9df3" Type="Metabolite">
-
     <Graphics CenterX="271.0" CenterY="108.36666666666667" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff"/>
+
     <Graphics CenterX="271.0" CenterY="108.36666666666667" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB00122"/>
+
     <Xref Database="HMDB" ID="HMDB0000122" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="ENO3" GraphId="da832" Type="GeneProduct" GroupRef="e7329">
   <DataNode TextLabel="ENO3" GraphId="da832" Type="GeneProduct" GroupRef="e7329">
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Eno3"/>
+
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Eno3" />
-
     <Graphics CenterX="416.9999999999999" CenterY="1056.8139534883708" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
+
     <Graphics CenterX="416.9999999999999" CenterY="1056.8139534883708" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="2027"/>
+
     <Xref Database="Entrez Gene" ID="2027" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="ENO1" GraphId="daabb" Type="GeneProduct" GroupRef="e7329">
   <DataNode TextLabel="ENO1" GraphId="daabb" Type="GeneProduct" GroupRef="e7329">
-
     <Graphics CenterX="416.9999999999999" CenterY="1037.8139534883708" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
+
     <Graphics CenterX="416.9999999999999" CenterY="1037.8139534883708" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="2023"/>
+
     <Xref Database="Entrez Gene" ID="2023" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Glyceraldehyde 3P" GraphId="dd104" Type="Metabolite">
   <DataNode TextLabel="Glyceraldehyde 3P" GraphId="dd104" Type="Metabolite">
-
     <Graphics CenterX="271.0" CenterY="782.7639534883707" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff"/>
+
     <Graphics CenterX="271.0" CenterY="782.7639534883707" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB01112"/>
+
     <Xref Database="HMDB" ID="HMDB0001112" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Pyruvate" GraphId="df744" Type="Metabolite">
   <DataNode TextLabel="Pyruvate" GraphId="df744" Type="Metabolite">
-
     <Graphics CenterX="271.00000000000006" CenterY="1227.8139534883705" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff"/>
+
     <Graphics CenterX="271.00000000000006" CenterY="1227.8139534883705" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB00243"/>
+
     <Xref Database="HMDB" ID="HMDB0000243" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="LDHC" GraphId="e06e5" Type="GeneProduct" GroupRef="e91ae">
   <DataNode TextLabel="LDHC" GraphId="e06e5" Type="GeneProduct" GroupRef="e91ae">
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Ldhc"/>
+
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Ldhc" />
-
     <Graphics CenterX="120.0" CenterY="1299.8139534883705" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
+
     <Graphics CenterX="120.0" CenterY="1299.8139534883705" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="3948"/>
+
     <Xref Database="Entrez Gene" ID="3948" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="HK3" GraphId="e0a56" Type="GeneProduct" GroupRef="fda36">
   <DataNode TextLabel="HK3" GraphId="e0a56" Type="GeneProduct" GroupRef="fda36">
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Hk3"/>
+
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Hk3" />
-
     <Graphics CenterX="149.2212885154063" CenterY="291.6778711484597" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
+
     <Graphics CenterX="149.2212885154063" CenterY="291.6778711484597" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="3101"/>
+
     <Xref Database="Entrez Gene" ID="3101" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Pyruvate" GraphId="e1b43" Type="Metabolite">
   <DataNode TextLabel="Pyruvate" GraphId="e1b43" Type="Metabolite">
-
     <Graphics CenterX="773.0" CenterY="1280.147286821704" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff"/>
+
     <Graphics CenterX="773.0" CenterY="1280.147286821704" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB00243"/>
+
     <Xref Database="HMDB" ID="HMDB0000243" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Fructose 6P" GraphId="e2849" Type="Metabolite">
   <DataNode TextLabel="Fructose 6P" GraphId="e2849" Type="Metabolite">
-
     <Graphics CenterX="271.0" CenterY="584.4806201550373" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff"/>
+
     <Graphics CenterX="271.0" CenterY="584.4806201550373" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="ChEBI" ID="61527"/>
+
     <Xref Database="ChEBI" ID="61527" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Malate" GraphId="e2cf7" Type="Metabolite">
   <DataNode TextLabel="Malate" GraphId="e2cf7" Type="Metabolite">
-
     <Graphics CenterX="851.0" CenterY="1223.8139534883708" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff"/>
+
     <Graphics CenterX="851.0" CenterY="1223.8139534883708" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB00744"/>
+
     <Xref Database="HMDB" ID="HMDB0000744" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Glucose" GraphId="e51e3" Type="Metabolite">
   <DataNode TextLabel="Glucose" GraphId="e51e3" Type="Metabolite">
-
     <Graphics CenterX="271.0" CenterY="228.36666666666667" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff"/>
+
     <Graphics CenterX="271.0" CenterY="228.36666666666667" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB00122"/>
+
     <Xref Database="HMDB" ID="HMDB0000122" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="LDHB" GraphId="e5db1" Type="GeneProduct" GroupRef="e91ae">
   <DataNode TextLabel="LDHB" GraphId="e5db1" Type="GeneProduct" GroupRef="e91ae">
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Ldhb"/>
+
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Ldhb" />
-
     <Graphics CenterX="120.0" CenterY="1279.8139534883705" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
+
     <Graphics CenterX="120.0" CenterY="1279.8139534883705" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="3945"/>
+
     <Xref Database="Entrez Gene" ID="3945" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Triglyceride synthesis" GraphId="e62a7" Type="Pathway">
   <DataNode TextLabel="Triglyceride synthesis" GraphId="e62a7" Type="Pathway">
-
     <Graphics CenterX="622.1162464985995" CenterY="788.147286821704" Width="155.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle" Color="14961e"/>
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     <Graphics CenterX="622.1162464985995" CenterY="788.147286821704" Width="155.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle" Color="14961e" />
-
     <Xref Database="WikiPathways" ID="WP325"/>
+
     <Xref Database="WikiPathways" ID="WP325" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="MPC2" GraphId="e62cc" Type="GeneProduct" GroupRef="ee3fe">
   <DataNode TextLabel="MPC2" GraphId="e62cc" Type="GeneProduct" GroupRef="ee3fe">
-
     <Graphics CenterX="633.0" CenterY="1290.147286821704" Width="80.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
+
     <Graphics CenterX="633.0" CenterY="1290.147286821704" Width="80.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="25874"/>
+
     <Xref Database="Entrez Gene" ID="25874" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="MPC1" GraphId="e6f94" Type="GeneProduct" GroupRef="ee3fe">
   <DataNode TextLabel="MPC1" GraphId="e6f94" Type="GeneProduct" GroupRef="ee3fe">
-
     <Graphics CenterX="633.0" CenterY="1270.147286821704" Width="80.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
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     <Graphics CenterX="633.0" CenterY="1270.147286821704" Width="80.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="51660"/>
+
     <Xref Database="Entrez Gene" ID="51660" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="ENO2" GraphId="e7055" Type="GeneProduct" GroupRef="e7329">
   <DataNode TextLabel="ENO2" GraphId="e7055" Type="GeneProduct" GroupRef="e7329">
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Eno2"/>
+
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Eno2" />
-
     <Graphics CenterX="416.9999999999999" CenterY="1076.8139534883705" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
+
     <Graphics CenterX="416.9999999999999" CenterY="1076.8139534883705" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="2026"/>
+
     <Xref Database="Entrez Gene" ID="2026" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Glycogen metabolism" GraphId="ea163" Type="Pathway">
   <DataNode TextLabel="Glycogen metabolism" GraphId="ea163" Type="Pathway">
-
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-
     <Xref Database="WikiPathways" ID="WP500"/>
+
     <Xref Database="WikiPathways" ID="WP500" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="G6PC" GraphId="eb6d4" Type="GeneProduct">
   <DataNode TextLabel="G6PC" GraphId="eb6d4" Type="GeneProduct">
     <Comment>Not present in brain and muscle, so those organs can not produce their own glucose in the gluconeogenesis pathway</Comment>
     <Comment>Not present in brain and muscle, so those organs can not produce their own glucose in the gluconeogenesis pathway</Comment>
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="G6pc"/>
+
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="G6pc" />
-
     <Graphics CenterX="416.8991596638656" CenterY="283.6274509803923" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
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     <Graphics CenterX="416.8991596638656" CenterY="283.6274509803923" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="2538"/>
+
     <Xref Database="Entrez Gene" ID="2538" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="HK2" GraphId="ec226" Type="GeneProduct" GroupRef="fda36">
   <DataNode TextLabel="HK2" GraphId="ec226" Type="GeneProduct" GroupRef="fda36">
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Hk2"/>
+
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Hk2" />
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     <Graphics CenterX="149.2212885154063" CenterY="271.67787114845964" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
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     <Graphics CenterX="149.2212885154063" CenterY="271.67787114845964" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="3099"/>
+
     <Xref Database="Entrez Gene" ID="3099" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="PCK1" GraphId="ec8e8" Type="GeneProduct">
   <DataNode TextLabel="PCK1" GraphId="ec8e8" Type="GeneProduct">
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Pck1"/>
+
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Pck1" />
-
     <Graphics CenterX="351.9999999999999" CenterY="1175.8139534883717" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
+
     <Graphics CenterX="351.9999999999999" CenterY="1175.8139534883717" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="5105"/>
+
     <Xref Database="Entrez Gene" ID="5105" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="PGK2" GraphId="f09d0" Type="GeneProduct" GroupRef="b58f7">
   <DataNode TextLabel="PGK2" GraphId="f09d0" Type="GeneProduct" GroupRef="b58f7">
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Pgk2"/>
+
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Pgk2" />
-
     <Graphics CenterX="416.9999999999999" CenterY="910.8139534883709" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
+
     <Graphics CenterX="416.9999999999999" CenterY="910.8139534883709" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="5232"/>
+
     <Xref Database="Entrez Gene" ID="5232" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Aspartate" GraphId="f3733" Type="Metabolite">
   <DataNode TextLabel="Aspartate" GraphId="f3733" Type="Metabolite">
-
     <Graphics CenterX="851.0" CenterY="1038.147286821704" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff"/>
+
     <Graphics CenterX="851.0" CenterY="1038.147286821704" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB00191"/>
+
     <Xref Database="HMDB" ID="HMDB0000191" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="SLC2A4" GraphId="f4bdb" Type="GeneProduct" GroupRef="c8496">
   <DataNode TextLabel="SLC2A4" GraphId="f4bdb" Type="GeneProduct" GroupRef="c8496">
-
     <Graphics CenterX="416.0" CenterY="185.655462184874" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
+
     <Graphics CenterX="416.0" CenterY="185.655462184874" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="6517"/>
+
     <Xref Database="Entrez Gene" ID="6517" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Dihydroxyacetone-P" GraphId="f4df9" Type="Metabolite">
   <DataNode TextLabel="Dihydroxyacetone-P" GraphId="f4df9" Type="Metabolite">
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     <Graphics CenterX="436.0" CenterY="788.147286821704" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff"/>
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     <Graphics CenterX="436.0" CenterY="788.147286821704" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
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     <Xref Database="HMDB" ID="HMDB01473"/>
+
     <Xref Database="HMDB" ID="HMDB0001473" />
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   </DataNode>
   <DataNode TextLabel="P-enolpyruvate" GraphId="f56ff" Type="Metabolite">
   <DataNode TextLabel="P-enolpyruvate" GraphId="f56ff" Type="Metabolite">
-
     <Graphics CenterX="271.0" CenterY="1088.5139534883706" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff"/>
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     <Graphics CenterX="271.0" CenterY="1088.5139534883706" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
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     <Xref Database="HMDB" ID="HMDB00263"/>
+
     <Xref Database="HMDB" ID="HMDB0000263" />
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   </DataNode>
   <DataNode TextLabel="FBP2" GraphId="f6085" Type="GeneProduct" GroupRef="de60a">
   <DataNode TextLabel="FBP2" GraphId="f6085" Type="GeneProduct" GroupRef="de60a">
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Fbp2"/>
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Fbp2" />
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     <Graphics CenterX="416.99999999999994" CenterY="627.7635333203034" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle"/>
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     <Graphics CenterX="416.99999999999994" CenterY="627.7635333203034" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="8789"/>
+
     <Xref Database="Entrez Gene" ID="8789" />
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   </DataNode>
   <DataNode TextLabel="Aspartate" GraphId="f6f69" Type="Metabolite">
   <DataNode TextLabel="Aspartate" GraphId="f6f69" Type="Metabolite">
-
     <Graphics CenterX="527.6500000000001" CenterY="1038.147286821704" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff"/>
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     <Graphics CenterX="527.6500000000001" CenterY="1038.147286821704" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
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     <Xref Database="HMDB" ID="HMDB00191"/>
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     <Xref Database="HMDB" ID="HMDB0000191" />
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   </DataNode>
   <DataNode TextLabel="SLC2A3" GraphId="f9637" Type="GeneProduct" GroupRef="c8496">
   <DataNode TextLabel="SLC2A3" GraphId="f9637" Type="GeneProduct" GroupRef="c8496">
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     <Graphics CenterX="416.0" CenterY="165.655462184874" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
-
     <Xref Database="Entrez Gene" ID="6515"/>
+
     <Xref Database="Entrez Gene" ID="6515" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Glucose-6P" GraphId="f9a44" Type="Metabolite">
   <DataNode TextLabel="Glucose-6P" GraphId="f9a44" Type="Metabolite">
     <Comment>Glucose-6-Phosphate (2-)</Comment>
     <Comment>Glucose-6-Phosphate (2-)</Comment>
-
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     <Graphics CenterX="271.0" CenterY="321.2745098039219" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
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     <Xref Database="ChEBI" ID="CHEBI:75052"/>
+
     <Xref Database="ChEBI" ID="CHEBI:75052" />
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   </DataNode>
   <DataNode TextLabel="GCK" GraphId="fb06f" Type="GeneProduct" GroupRef="fda36">
   <DataNode TextLabel="GCK" GraphId="fb06f" Type="GeneProduct" GroupRef="fda36">
     <Comment>Gck is mainly active in liver</Comment>
     <Comment>Gck is mainly active in liver</Comment>
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Gck"/>
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Gck" />
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     <Graphics CenterX="149.2212885154063" CenterY="311.6778711484597" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
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     <Xref Database="Entrez Gene" ID="2645"/>
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     <Xref Database="Entrez Gene" ID="2645" />
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   <DataNode TextLabel="PGAM1" GraphId="fb96d" Type="GeneProduct" GroupRef="cbc7d">
   <DataNode TextLabel="PGAM1" GraphId="fb96d" Type="GeneProduct" GroupRef="cbc7d">
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Pgam1"/>
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Pgam1" />
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     <Graphics CenterX="143.00000000000006" CenterY="993.4806201550373" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
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     <Xref Database="Entrez Gene" ID="5223"/>
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     <Xref Database="Entrez Gene" ID="5223" />
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   <DataNode TextLabel="PKM2" GraphId="fbe23" Type="GeneProduct" GroupRef="f40b1">
   <DataNode TextLabel="PKM2" GraphId="fbe23" Type="GeneProduct" GroupRef="f40b1">
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Pkm2"/>
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Pkm2" />
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     <Xref Database="Entrez Gene" ID="5315"/>
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     <Xref Database="Entrez Gene" ID="5315" />
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   <DataNode TextLabel="TCA Cycle" GraphId="fdfd0" Type="Pathway">
   <DataNode TextLabel="TCA Cycle" GraphId="fdfd0" Type="Pathway">
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     <Xref Database="WikiPathways" ID="WP78"/>
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     <Xref Database="WikiPathways" ID="WP78" />
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   <DataNode TextLabel="ALDOB" GraphId="ffa45" Type="GeneProduct" GroupRef="de5a2">
   <DataNode TextLabel="ALDOB" GraphId="ffa45" Type="GeneProduct" GroupRef="de5a2">
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Aldob"/>
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="Aldob" />
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     <Graphics CenterX="416.99999999999994" CenterY="716.8139534883708" Width="60.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" />
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     <Xref Database="Entrez Gene" ID="229"/>
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     <Xref Database="Entrez Gene" ID="229" />
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   </DataNode>
   <DataNode TextLabel="Glucose-6P (open)" GraphId="f44c7" Type="Metabolite">
   <DataNode TextLabel="Glucose-6P (open)" GraphId="f44c7" Type="Metabolite">
     <Comment>D-Glucose-6-Phosphate (2-) open form</Comment>
     <Comment>D-Glucose-6-Phosphate (2-) open form</Comment>
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     <Xref Database="ChEBI" ID="CHEBI:57584"/>
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     <Xref Database="ChEBI" ID="CHEBI:57584" />
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   </DataNode>
   <DataNode TextLabel="PGI" GraphId="b6f20" Type="GeneProduct">
   <DataNode TextLabel="PGI" GraphId="b6f20" Type="GeneProduct">
     <Comment>phosphoglucose isomerase (PGI)</Comment>
     <Comment>phosphoglucose isomerase (PGI)</Comment>
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="G6pc"/>
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="G6pc" />
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     <Graphics CenterX="123.89915966386559" CenterY="443.6274509803923" Width="60.0" Height="20.0" ZOrder="32773" FontSize="10" Valign="Middle"/>
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     <Graphics CenterX="123.89915966386559" CenterY="443.6274509803923" Width="60.0" Height="20.0" ZOrder="32773" FontSize="10" Valign="Middle" />
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     <Xref Database="Enzyme Nomenclature" ID="5.3.1.9"/>
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     <Xref Database="Enzyme Nomenclature" ID="5.3.1.9" />
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   <DataNode TextLabel="Fructose 6P (open)" GraphId="ddf6b" Type="Metabolite">
   <DataNode TextLabel="Fructose 6P (open)" GraphId="ddf6b" Type="Metabolite">
     <Comment>fructose-6-phosphate (2-) open form</Comment>
     <Comment>fructose-6-phosphate (2-) open form</Comment>
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     <Graphics CenterX="271.0" CenterY="481.0" Width="100.0" Height="20.0" ZOrder="32774" FontSize="10" Valign="Middle" Color="0000ff" />
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     <Xref Database="ChEBI" ID="CHEBI:57579"/>
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     <Xref Database="ChEBI" ID="CHEBI:57579" />
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   <DataNode TextLabel="GPI" GraphId="ae83f" Type="GeneProduct">
   <DataNode TextLabel="GPI" GraphId="ae83f" Type="GeneProduct">
     <Comment>glucose-6-phosphate isomerase</Comment>
     <Comment>glucose-6-phosphate isomerase</Comment>
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="G6pc"/>
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="G6pc" />
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     <Xref Database="Entrez Gene" ID="2821"/>
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     <Xref Database="Entrez Gene" ID="2821" />
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       <Anchor Position="0.5732368896925858" Shape="None" GraphId="b33fb" />
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     <Xref Database="" ID="" />
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Line 865: Line 880:
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+
</Pathway>
</Pathway>

Revision as of 12:11, 16 August 2019

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Pathway history

View all...
CompareRevisionActionTimeUserComment
107184view14:27, 17 September 2019MaintBotChEBI identifier normalization
106436view23:25, 28 August 2019KhanspersModified description
106215view12:11, 16 August 2019MaintBotHMDB identifier normalization
105497view05:51, 8 August 2019KhanspersModified description
103755view23:18, 3 April 2019Khanspersfixed encoding issues in description
103681view09:00, 28 March 2019DeSlRemoved licence number and last modified part.
103680view09:00, 28 March 2019DeSlOntology Term : 'citric acid cycle pathway' added !
98729view23:28, 2 October 2018Khanspersupdated complexes
98722view18:52, 1 October 2018KhanspersReverted to version '23:57, 11 March 2018' by Khanspers
97388view04:42, 14 May 2018Khansperscleanup
97264view03:45, 7 May 2018Ambar21pathway upload
96385view23:57, 11 March 2018MarkAHershbergerModified title
94762view15:51, 5 October 2017EgonwTagged interactions with mim-types.
93722view14:48, 14 August 2017DeSlAdded nodes for open/closed forms of glucoses; changed IDs to (2-) forms where needed.
90450view21:05, 16 November 2016KhanspersReverted to version '06:22, 10 September 2016' by Khanspers
90290view22:57, 2 November 2016MirkoBaranziniSpecify description
90289view22:55, 2 November 2016MirkoBaranziniPeriodical save, work in progress
90268view06:39, 28 October 2016MirkoBaranziniSpecify description
90267view06:37, 28 October 2016MirkoBaranziniSpecify description
90256view08:48, 27 October 2016MirkoBaranziniPeriodical save, work in progress
90255view08:36, 27 October 2016MirkoBaranziniPeriodical save, work in progress
90254view08:26, 27 October 2016MirkoBaranziniPeriodical save, work in progress
90253view08:15, 27 October 2016MirkoBaranziniPeriodical save, work in progress
90250view22:22, 26 October 2016MirkoBaranziniSpecify description
90249view21:53, 26 October 2016MirkoBaranzinisxq
90248view21:49, 26 October 2016MirkoBaranziniSpecify description
90246view20:35, 26 October 2016MirkoBaranziniPeriodical save, work in progress
90245view20:15, 26 October 2016MirkoBaranziniSpecify description
90239view12:00, 26 October 2016MirkoBaranziniPeriodical save, work in progress
90238view11:56, 26 October 2016MirkoBaranziniGlicolisi1
90237view11:54, 26 October 2016MirkoBaranziniSpecify description
90236view11:50, 26 October 2016MirkoBaranziniPeriodical save, work in progress
90235view11:39, 26 October 2016MirkoBaranziniPeriodical save, work in progress
90234view11:36, 26 October 2016MirkoBaranziniSpecify description
90233view11:17, 26 October 2016MirkoBaranziniPeriodical save, work in progress
90232view11:05, 26 October 2016MirkoBaranziniPeriodical save, work in progress
90230view10:56, 26 October 2016MirkoBaranziniGlicolisi 1
90229view10:55, 26 October 2016MirkoBaranziniPeriodical save, work in progress
90228view10:50, 26 October 2016MirkoBaranziniSpecify description
90227view10:45, 26 October 2016MirkoBaranziniPeriodical save, work in progress
90226view10:40, 26 October 2016MirkoBaranziniglico1
90223view10:35, 26 October 2016MirkoBaranziniPeriodical save, work in progress
90222view10:25, 26 October 2016MirkoBaranziniPeriodical save, work in progress
90221view10:15, 26 October 2016MirkoBaranziniPeriodical save, work in progress
90220view10:05, 26 October 2016MirkoBaranziniPeriodical save, work in progress
90219view09:45, 26 October 2016MirkoBaranziniPeriodical save, work in progress
90218view09:34, 26 October 2016MirkoBaranziniPeriodical save, work in progress
90217view09:24, 26 October 2016MirkoBaranziniPeriodical save, work in progress
90216view09:14, 26 October 2016MirkoBaranziniPeriodical save, work in progress
90215view09:12, 26 October 2016MirkoBaranziniSpecify description

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/6/6f/WP534_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/6/6f/WP534_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 106215)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
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