Overview of perturbations to host-cell autophagy, induced by distinct proteins of SARS-CoV-2 (Homo sapiens)

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Phospho(S/T) sitecargo sequestrationAccumulation of autophagy receptors LegendHOPS COMPLEXAutophagy receptors Autophagosome/PhagophoreVPS36mTORC1RPS6LARP1MLST8ATG5ULK1ATG16LORF3ATG3VPS16ORF3VPS11DEPTORVPS33AVPS41MAP1LC3BVPS18RHEBRAB7AGSK3RPTORTSC2P70S6KAKT1HOPS COMPLEXATG13GABARAPL2OPTNATG12SQSTM1FIP200MTORATG4AMPKSNAREsCALCOCO2PKMATG7NRB1AKTS1ATG9ATAX1BP1S738 S366S272K97S766T269S638K149S240S238S479K46K435S202K24S203K281T525K157K143S355 S361K82K74S735S18S477S1347T1162LysosomeAutophagolysosomeFusionLate endosomeUbiqutination (K) siteBindingInteractionUpregulationSARS-CoV-2 proteinInhibitionNSP61


Overview of

perturbations to host-cell autophagy, induced by distinct proteins of SARS-CoV-2, derived from the network diffusion model and overlaid with the changes in protein levels, ubiquitination and

phosphorylation induced by SARS-CoV-2 infection.

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Ontology Terms



  1. Alexey Stukalov, Virginie Girault, Vincent Grass, Valter Bergant, Ozge Karayel, Christian Urban, Darya A. Haas, Yiqi Huang, Lila Oubraham, Anqi Wang, Sabri M. Hamad, Antonio Piras, Maria Tanzer, Fynn M. Hansen, Thomas Enghleitner, Maria Reinecke, Teresa M. Lavacca, Rosina Ehmann, Roman Wölfel, Jörg Jores, Bernhard Kuster, Ulrike Protzer, Roland Rad, John Ziebuhr, Volker Thiel, Pietro Scaturro, Matthias Mann, Andreas Pichlmair; ''Multi-level proteomics reveals host-perturbation strategies of SARS-CoV-2 and SARS-CoV''; https://doi.org/10.1101/2020.06.17.156455, 2020


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115858view15:54, 18 March 2021Marvin M2Changed legend to graphical elements
115855view15:44, 18 March 2021Marvin M2added annotations
115839view14:52, 18 March 2021Marvin M2corrected ref
115836view14:35, 18 March 2021Marvin M2connected lines, some annotations
114087view08:27, 21 December 2020EgonwTyped 'phagophore' and give it an identifier
114075view06:17, 21 December 2020EgonwConverted a label involved in an interaction into a DataNode
112887view13:08, 15 October 2020Fehrhartfixed unconnected lines
111196view04:21, 24 July 2020Rex D A BConnections
111139view16:37, 17 July 2020EgonwColored the proteins according to the COVID19 Disease Maps convention
111028view06:22, 1 July 2020EgonwUpdated the UniProt data source
110916view04:32, 21 June 2020Rex D A BOntology Term : 'altered autophagy pathway' added !
110915view04:30, 21 June 2020Rex D A BOntology Term : 'infectious disease pathway' added !
110914view04:18, 21 June 2020Rex D A BModified description
110913view04:17, 21 June 2020Rex D A BNew pathway

External references


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NameTypeDatabase referenceComment
AKT1ProteinP31749 (Uniprot-SwissProt)
AMPKProtein5563 (NCBI Protein)
ATG12Protein9140 (NCBI Protein)
ATG13Protein9776 (NCBI Protein)
ATG16LProtein55054 (NCBI Protein)
ATG3Protein64422 (NCBI Protein)
ATG5Protein9474 (NCBI Protein)
ATG7Protein10533 (NCBI Protein)
ATG9AProtein79065 (NCBI Protein)
CALCOCO2Protein10241 (NCBI Protein)
DEPTORProtein64798 (NCBI Protein)
FIP200Protein9821 (NCBI Protein)
GABARAPL2Protein11345 (NCBI Protein)
GSK3ProteinP31749 (NCBI Protein)
MAP1LC3BGeneProduct81631 (NCBI Protein)
MLST8Protein64223 (NCBI Protein)
MTORProtein2475 (NCBI Protein)
NSP6ProteinYP_009725302 (NCBI Protein)
OPTNProtein10133 (NCBI Protein)
PKMProtein5315 (NCBI Protein)
RAB7AProtein7879 (NCBI Protein)
RHEBProtein6009 (NCBI Protein)
RPS6Protein6194 (NCBI Protein)
RPTORProtein57521 (NCBI Protein)
SQSTM1Protein8878 (NCBI Protein)
TAX1BP1Protein8887 (NCBI Protein)
TSC2ProteinP31749 (NCBI Protein)
ULK1Protein8408 (NCBI Protein)
VPS11Protein55823 (NCBI Protein)
VPS16Protein64601 (NCBI Protein)
VPS33AProtein65082 (NCBI Protein)
VPS36Protein51028 (NCBI Protein)
VPS41Protein27072 (NCBI Protein)

Annotated Interactions

No annotated interactions

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