HIPK2 in kidney fibrosis (Homo sapiens)

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Current revision (16:55, 4 December 2019) (view source)
 
Line 3: Line 3:
   <Comment Source="WikiPathways-description">This pathway was adapted from Figure 6i of PMID: 22406746</Comment>
   <Comment Source="WikiPathways-description">This pathway was adapted from Figure 6i of PMID: 22406746</Comment>
   <BiopaxRef>bc9</BiopaxRef>
   <BiopaxRef>bc9</BiopaxRef>
-
   <Graphics BoardWidth="945.0" BoardHeight="727.0" />
+
   <Graphics BoardWidth="867.5" BoardHeight="665.0" />
   <DataNode TextLabel="SIAH1" GraphId="e3933" Type="GeneProduct">
   <DataNode TextLabel="SIAH1" GraphId="e3933" Type="GeneProduct">
     <Graphics CenterX="500.0" CenterY="100.0" Width="75.0" Height="25.0" ZOrder="32768" FontSize="12" Valign="Middle" />
     <Graphics CenterX="500.0" CenterY="100.0" Width="75.0" Height="25.0" ZOrder="32768" FontSize="12" Valign="Middle" />
Line 16: Line 16:
     <Xref Database="Entrez Gene" ID="28996" />
     <Xref Database="Entrez Gene" ID="28996" />
   </DataNode>
   </DataNode>
-
   <DataNode TextLabel="Wnt_B-catenin" GraphId="dc5e1" Type="Pathway">
+
   <DataNode TextLabel="Wnt / B-catenin" GraphId="dc5e1" Type="Pathway">
     <Graphics CenterX="200.0" CenterY="350.0" Width="100.0" Height="25.0" ZOrder="32770" FontWeight="Bold" FontSize="12" Valign="Middle" ShapeType="None" Color="14961e" />
     <Graphics CenterX="200.0" CenterY="350.0" Width="100.0" Height="25.0" ZOrder="32770" FontWeight="Bold" FontSize="12" Valign="Middle" ShapeType="None" Color="14961e" />
     <Xref Database="WikiPathways" ID="WP4150" />
     <Xref Database="WikiPathways" ID="WP4150" />
Line 161: Line 161:
   <InfoBox CenterX="0.0" CenterY="0.0" />
   <InfoBox CenterX="0.0" CenterY="0.0" />
   <Biopax>
   <Biopax>
 +
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 +
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">kidney disease pathway</bp:TERM>
 +
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000300</bp:ID>
 +
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
 +
    </bp:openControlledVocabulary>
 +
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 +
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">renal fibrosis</bp:TERM>
 +
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">DOID:0050855</bp:ID>
 +
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Disease</bp:Ontology>
 +
    </bp:openControlledVocabulary>
     <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="bc9">
     <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="bc9">
       <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">22406746</bp:ID>
       <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">22406746</bp:ID>
Line 182: Line 192:
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">He JC</bp:AUTHORS>
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">He JC</bp:AUTHORS>
     </bp:PublicationXref>
     </bp:PublicationXref>
-
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 
-
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">kidney disease pathway</bp:TERM>
 
-
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000300</bp:ID>
 
-
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
 
-
    </bp:openControlledVocabulary>
 
-
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 
-
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">renal fibrosis</bp:TERM>
 
-
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">DOID:0050855</bp:ID>
 
-
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Disease</bp:Ontology>
 
-
    </bp:openControlledVocabulary>
 
   </Biopax>
   </Biopax>
</Pathway>
</Pathway>

Current revision

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
108288view16:55, 4 December 2019AgustinGV
108287view16:54, 4 December 2019AgustinGV
108286view16:52, 4 December 2019AgustinGV
108025view21:15, 22 November 2019AgustinGV
108024view21:13, 22 November 2019AgustinGV
108023view21:10, 22 November 2019AgustinGV
108022view20:59, 22 November 2019AgustinGVOntology Term : 'renal fibrosis' added !
108021view20:58, 22 November 2019AgustinGVOntology Term : 'kidney disease pathway' added !
108019view20:55, 22 November 2019AgustinGVNew pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/4/44/WP4751_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/4/44/WP4751_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 108288)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
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