Serine Metabolism (Homo sapiens)

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(Ontology Term : 'serine metabolic pathway' added !)
(Ontology Term : 'inherited metabolic disorder' added !)
Line 412: Line 412:
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dionisi-Vici C</bp:AUTHORS>
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dionisi-Vici C</bp:AUTHORS>
     </bp:PublicationXref>
     </bp:PublicationXref>
-
   <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#"><bp:TERM>serine metabolic pathway</bp:TERM><bp:ID>PW:0001084</bp:ID><bp:Ontology>Pathway Ontology</bp:Ontology></bp:openControlledVocabulary></Biopax>
+
   <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#"><bp:TERM>serine metabolic pathway</bp:TERM><bp:ID>PW:0001084</bp:ID><bp:Ontology>Pathway Ontology</bp:Ontology></bp:openControlledVocabulary><bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#"><bp:TERM>inherited metabolic disorder</bp:TERM><bp:ID>DOID:655</bp:ID><bp:Ontology>Disease</bp:Ontology></bp:openControlledVocabulary></Biopax>
</Pathway>
</Pathway>

Revision as of 12:23, 16 August 2019

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
107647view07:43, 25 October 2019DeSlUpdated layout
107634view15:35, 24 October 2019DeSlChanged complex for metabolites into group.
107633view15:34, 24 October 2019DeSlChanged complex of metabolites to group.
107632view15:34, 24 October 2019DeSlUpdated layout
107631view15:33, 24 October 2019DeSlUpdated secondary ChEBI IDs.
107540view18:13, 18 October 2019Khanspersadded xrefs
106455view09:50, 30 August 2019DeSlUpdated glycolysis PW ID
106454view09:49, 30 August 2019DeSlOntology Term : 'PSPH deficiency' added !
106453view09:49, 30 August 2019DeSlOntology Term : 'PSAT deficiency' added !
106452view09:47, 30 August 2019DeSlOntology Term : 'PHGDH deficiency' added !
106220view12:23, 16 August 2019AkutmonOntology Term : 'inherited metabolic disorder' added !
106219view12:20, 16 August 2019AkutmonOntology Term : 'serine metabolic pathway' added !
106218view12:17, 16 August 2019Akutmonchanged deaseases to labels
106217view12:14, 16 August 2019AkutmonNew pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/f/ff/WP4688_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/f/ff/WP4688_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 106220)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
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