WikiPathways Academy: met-1-last (Homo sapiens)

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(Change of Mevalonic acid to glucose)
Current revision (12:47, 11 June 2019) (view source)
(Addition of 3 citations. Two that pertain to the entire pathway. Two that have relvance to individual elements of the pathway)
 
Line 11: Line 11:
   <BiopaxRef>cdc</BiopaxRef>
   <BiopaxRef>cdc</BiopaxRef>
   <BiopaxRef>e73</BiopaxRef>
   <BiopaxRef>e73</BiopaxRef>
 +
  <BiopaxRef>a62</BiopaxRef>
 +
  <BiopaxRef>b0f</BiopaxRef>
   <Graphics BoardWidth="768.8919009370817" BoardHeight="681.5097543709028" />
   <Graphics BoardWidth="768.8919009370817" BoardHeight="681.5097543709028" />
   <DataNode TextLabel="NSDHL" GraphId="a12" Type="GeneProduct" GroupRef="b39b6">
   <DataNode TextLabel="NSDHL" GraphId="a12" Type="GeneProduct" GroupRef="b39b6">
Line 104: Line 106:
   </DataNode>
   </DataNode>
   <DataNode TextLabel="HMG-CoA" GraphId="e89f4" Type="Metabolite">
   <DataNode TextLabel="HMG-CoA" GraphId="e89f4" Type="Metabolite">
 +
    <BiopaxRef>b0f</BiopaxRef>
     <Graphics CenterX="370.0" CenterY="174.75644257703044" Width="84.03333333333333" Height="25.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff" />
     <Graphics CenterX="370.0" CenterY="174.75644257703044" Width="84.03333333333333" Height="25.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff" />
     <Xref Database="HMDB" ID="HMDB01375" />
     <Xref Database="HMDB" ID="HMDB01375" />
Line 219: Line 222:
   </Interaction>
   </Interaction>
   <Interaction GraphId="e5499">
   <Interaction GraphId="e5499">
 +
    <BiopaxRef>ca6</BiopaxRef>
     <Graphics ZOrder="12288" LineThickness="1.0">
     <Graphics ZOrder="12288" LineThickness="1.0">
       <Point X="370.0" Y="258.6064425770311" GraphRef="a6a21" RelX="0.0" RelY="1.0" />
       <Point X="370.0" Y="258.6064425770311" GraphRef="a6a21" RelX="0.0" RelY="1.0" />
Line 322: Line 326:
   </Interaction>
   </Interaction>
   <Interaction GraphId="idb6f61ba5">
   <Interaction GraphId="idb6f61ba5">
 +
    <BiopaxRef>ca6</BiopaxRef>
     <Graphics ZOrder="12288" LineThickness="1.0">
     <Graphics ZOrder="12288" LineThickness="1.0">
       <Point X="317.7269591293723" Y="364.7014925373137" GraphRef="e5c" RelX="1.0" RelY="0.0" />
       <Point X="317.7269591293723" Y="364.7014925373137" GraphRef="e5c" RelX="1.0" RelY="0.0" />
Line 388: Line 393:
       <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
       <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
     </bp:openControlledVocabulary>
     </bp:openControlledVocabulary>
 +
    <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="a62">
 +
      <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">12235098</bp:ID>
 +
      <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB>
 +
      <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Malformation syndromes due to inborn errors of cholesterol synthesis.</bp:TITLE>
 +
      <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">J Clin Invest</bp:SOURCE>
 +
      <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2002</bp:YEAR>
 +
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Porter FD</bp:AUTHORS>
 +
    </bp:PublicationXref>
 +
    <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="b0f">
 +
      <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">31179827</bp:ID>
 +
      <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB>
 +
      <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Maternal dyslipidemia during early pregnancy and epigenetic aging of the placenta.</bp:TITLE>
 +
      <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Epigenetics</bp:SOURCE>
 +
      <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2019</bp:YEAR>
 +
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Shrestha D</bp:AUTHORS>
 +
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Workalemahu T</bp:AUTHORS>
 +
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Tekola-Ayele F</bp:AUTHORS>
 +
    </bp:PublicationXref>
 +
    <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="ca6">
 +
      <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">31177752</bp:ID>
 +
      <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB>
 +
      <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">[Effects of ω-3 polyunsaturated fatty acids from different sources on glucolipid metabolism in type 2 diabetic patients with dyslipidemia].</bp:TITLE>
 +
      <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Zhonghua Yu Fang Yi Xue Za Zhi</bp:SOURCE>
 +
      <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2019</bp:YEAR>
 +
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wang F</bp:AUTHORS>
 +
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Liu HC</bp:AUTHORS>
 +
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Liu XS</bp:AUTHORS>
 +
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Dong SN</bp:AUTHORS>
 +
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pan D</bp:AUTHORS>
 +
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Yang LG</bp:AUTHORS>
 +
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Sun GJ</bp:AUTHORS>
 +
    </bp:PublicationXref>
   </Biopax>
   </Biopax>
</Pathway>
</Pathway>

Current revision

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
104749view12:47, 11 June 2019Kat burtonAddition of 3 citations. Two that pertain to the entire pathway. Two that have relvance to individual elements of the pathway
104738view12:40, 11 June 2019Kat burtonChange of Mevalonic acid to glucose
104724view12:36, 11 June 2019Kat burtonOntology Term : 'classic metabolic pathway' added !
104716view12:31, 11 June 2019Kat burtonModified description
104710view12:24, 11 June 2019Kat burtonNew pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/6/6a/WP4637_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/6/6a/WP4637_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 104749)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
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