WikiPathways Academy: met-1-last (Homo sapiens)

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(Added Literature reference)
Current revision (12:43, 11 June 2019) (view source)
(changed refs)
 
Line 35: Line 35:
   </DataNode>
   </DataNode>
   <DataNode TextLabel="HMGCS1" GraphId="b21" Type="GeneProduct">
   <DataNode TextLabel="HMGCS1" GraphId="b21" Type="GeneProduct">
-
     <BiopaxRef>a10</BiopaxRef>
+
     <BiopaxRef>e65</BiopaxRef>
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="HMGCS1 | 3-hydroxy-3-methylglutaryl-Coenzyme A ..." />
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="HMGCS1 | 3-hydroxy-3-methylglutaryl-Coenzyme A ..." />
     <Graphics CenterX="284.3936257960389" CenterY="135.82560623193865" Width="66.66666666666669" Height="25.0" ZOrder="32768" FontSize="12" Valign="Middle" />
     <Graphics CenterX="284.3936257960389" CenterY="135.82560623193865" Width="66.66666666666669" Height="25.0" ZOrder="32768" FontSize="12" Valign="Middle" />
Line 396: Line 396:
       <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
       <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
     </bp:openControlledVocabulary>
     </bp:openControlledVocabulary>
-
    <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="a10">
 
-
      <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">12235098 </bp:ID>
 
-
      <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB>
 
-
      <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string"></bp:TITLE>
 
-
      <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string"></bp:SOURCE>
 
-
      <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string"></bp:YEAR>
 
-
    </bp:PublicationXref>
 
   </Biopax>
   </Biopax>
</Pathway>
</Pathway>

Current revision

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
104745view12:43, 11 June 2019Ljanssen86changed refs
104737view12:40, 11 June 2019Ljanssen86Added Literature reference
104727view12:36, 11 June 2019Ljanssen86Changed layout end product
104717view12:33, 11 June 2019Ljanssen86Ontology Term : 'classic metabolic pathway' added !
104713view12:30, 11 June 2019Ljanssen86Modified description
104699view12:18, 11 June 2019Ljanssen86New pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/7/78/WP4634_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/7/78/WP4634_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 104745)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
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