Biomarkers for urea cycle disorders (Homo sapiens)

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(Added two metabolites that are measured in AA panel)
(L-form of methionine.)
Line 13: Line 13:
   <DataNode TextLabel="Methionine&#xA;" GraphId="a030b" Type="Metabolite">
   <DataNode TextLabel="Methionine&#xA;" GraphId="a030b" Type="Metabolite">
     <Graphics CenterX="660.1996124267577" CenterY="840.4549999999991" Width="90.0" Height="25.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff" />
     <Graphics CenterX="660.1996124267577" CenterY="840.4549999999991" Width="90.0" Height="25.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB0033951" />
+
     <Xref Database="HMDB" ID="HMDB00696" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Alanine and &#xA;aspartate metabolism" GraphId="a6226" Type="Pathway">
   <DataNode TextLabel="Alanine and &#xA;aspartate metabolism" GraphId="a6226" Type="Pathway">

Revision as of 11:11, 11 July 2019

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
106803view13:28, 17 September 2019MaintBotHMDB identifier normalization
105146view11:11, 11 July 2019EgonwL-form of methionine.
104797view08:50, 18 June 2019IreneHemelAdded two metabolites that are measured in AA panel
104208view09:10, 10 May 2019IreneHemelChanged AST and ALT text labels
104158view08:46, 7 May 2019IreneHemelAdded information about metabolite charge to DataNode comments
104145view13:20, 6 May 2019IreneHemelOntology Term : 'carbamoyl phosphate synthetase I deficiency disease' added !
104144view13:20, 6 May 2019IreneHemelOntology Term : 'argininosuccinic aciduria' added !
104143view13:20, 6 May 2019IreneHemelOntology Term : 'hyperargininemia' added !
104142view13:19, 6 May 2019IreneHemelOntology Term : 'citrullinemia' added !
104141view13:18, 6 May 2019IreneHemelOntology Term : 'ornithine carbamoyltransferase deficiency' added !
104140view13:18, 6 May 2019IreneHemelOntology Term : 'urea cycle disorder' added !
104139view13:18, 6 May 2019IreneHemelOntology Term : 'inborn error of urea cycle pathway' added !
104138view13:17, 6 May 2019IreneHemelOntology Term : 'urea cycle pathway' added !
104137view13:14, 6 May 2019IreneHemelAdded references
104116view10:03, 6 May 2019DeSlRemoved unnecessary references.
104115view10:01, 6 May 2019IreneHemelTest for references
104113view07:18, 6 May 2019IreneHemelFixed interaction
104096view13:24, 3 May 2019IreneHemelModified description
104093view13:14, 3 May 2019IreneHemelNew pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/5/58/WP4583_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/5/58/WP4583_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 105146)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
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