Neurotransmitter Disorders (Homo sapiens)

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(Removed the RHEA: prefix from the identifier.)
Current revision (12:09, 16 August 2019) (view source)
(HMDB identifier normalization)
 
Line 48: Line 48:
   <DataNode TextLabel="Metanephrine" GraphId="d4ddb" Type="Metabolite">
   <DataNode TextLabel="Metanephrine" GraphId="d4ddb" Type="Metabolite">
     <Graphics CenterX="471.01533467129826" CenterY="162.5175240371622" Width="90.0" Height="25.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="3333ff" />
     <Graphics CenterX="471.01533467129826" CenterY="162.5175240371622" Width="90.0" Height="25.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="3333ff" />
-
     <Xref Database="HMDB" ID="HMDB04063" />
+
     <Xref Database="HMDB" ID="HMDB0004063" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Vanillactic acid" GraphId="d7ec0" Type="Metabolite">
   <DataNode TextLabel="Vanillactic acid" GraphId="d7ec0" Type="Metabolite">
     <Graphics CenterX="307.72615011081376" CenterY="207.72514712292903" Width="90.0" Height="25.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="3333ff" />
     <Graphics CenterX="307.72615011081376" CenterY="207.72514712292903" Width="90.0" Height="25.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="3333ff" />
-
     <Xref Database="HMDB" ID="HMDB00913" />
+
     <Xref Database="HMDB" ID="HMDB0000913" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Homovanillic acid" GraphId="db5a2" Type="Metabolite">
   <DataNode TextLabel="Homovanillic acid" GraphId="db5a2" Type="Metabolite">
Line 404: Line 404:
   <InfoBox CenterX="0.0" CenterY="0.0" />
   <InfoBox CenterX="0.0" CenterY="0.0" />
   <Biopax>
   <Biopax>
-
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 
-
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">aromatic amino acid decarboxylase deficiency pathway</bp:TERM>
 
-
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0002324</bp:ID>
 
-
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
 
-
    </bp:openControlledVocabulary>
 
-
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 
-
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">dopamine beta-hydroxylase deficiency</bp:TERM>
 
-
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">DOID:0090145</bp:ID>
 
-
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Disease</bp:Ontology>
 
-
    </bp:openControlledVocabulary>
 
-
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 
-
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">aromatic L-amino acid decarboxylase deficiency</bp:TERM>
 
-
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">DOID:0090123</bp:ID>
 
-
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Disease</bp:Ontology>
 
-
    </bp:openControlledVocabulary>
 
     <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="fdc">
     <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="fdc">
       <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string"></bp:ID>
       <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string"></bp:ID>
Line 438: Line 423:
       <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">neurotransmitter metabolic pathway</bp:TERM>
       <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">neurotransmitter metabolic pathway</bp:TERM>
       <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000407</bp:ID>
       <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000407</bp:ID>
 +
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
 +
    </bp:openControlledVocabulary>
 +
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 +
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">aromatic amino acid decarboxylase deficiency pathway</bp:TERM>
 +
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0002324</bp:ID>
       <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
       <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
     </bp:openControlledVocabulary>
     </bp:openControlledVocabulary>
Line 444: Line 434:
       <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0002208</bp:ID>
       <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0002208</bp:ID>
       <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
       <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
 +
    </bp:openControlledVocabulary>
 +
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 +
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">dopamine beta-hydroxylase deficiency</bp:TERM>
 +
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">DOID:0090145</bp:ID>
 +
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Disease</bp:Ontology>
 +
    </bp:openControlledVocabulary>
 +
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 +
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">aromatic L-amino acid decarboxylase deficiency</bp:TERM>
 +
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">DOID:0090123</bp:ID>
 +
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Disease</bp:Ontology>
     </bp:openControlledVocabulary>
     </bp:openControlledVocabulary>
   </Biopax>
   </Biopax>
</Pathway>
</Pathway>

Current revision

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Pathway history

View all...
CompareRevisionActionTimeUserComment
106196view12:09, 16 August 2019MaintBotHMDB identifier normalization
104416view06:26, 24 May 2019MaintBotRemoved the RHEA: prefix from the identifier.
104392view13:56, 23 May 2019Mkutmonfixed reference
104391view13:52, 23 May 2019Mkutmonadd Rhea identifiers
104029view17:42, 25 April 2019IreneHemelModified description
98921view05:17, 16 October 2018EgonwModified description
98251view09:36, 15 August 2018DeSlFixed layout
98250view09:34, 15 August 2018DeSlChanged layout of disease nodes
97385view03:58, 14 May 2018Khanspersdecreased board height
97384view03:57, 14 May 2018Khanspersdecreased board height
97366view10:07, 11 May 2018DeSlChanged layout, connected 5HTP as side metabolite (like chapter indicates), changed disease nodes to labels (with links).
96271view15:59, 3 March 2018EgonwFixed a datanode misclassification
96217view08:57, 1 March 2018DeSlModified description
96207view09:15, 28 February 2018AnneFriesacherModified description
96188view15:37, 23 February 2018AnneFriesacherAdded comments on diseases, added literature reference
96187view15:23, 23 February 2018AnneFriesacherEdited IDs
96186view15:05, 23 February 2018AnneFriesacher
96185view13:46, 23 February 2018DeSlAdded OMIM IDs for disease
96184view13:43, 23 February 2018DeSlAdded DISEASE info to node
96183view13:34, 23 February 2018AnneFriesacherOntology Term : 'aromatic L-amino acid decarboxylase deficiency' added !
96182view13:33, 23 February 2018AnneFriesacherOntology Term : 'aromatic amino acid decarboxylase deficiency pathway' added !
96181view13:32, 23 February 2018DeSlOntology Term : 'dopamine beta hydroxylase deficiency pathway' added !
96180view13:32, 23 February 2018DeSlOntology Term : 'dopamine beta-hydroxylase deficiency' added !
96179view13:30, 23 February 2018DeSlOntology Term : 'neurotransmitter metabolic pathway' added !
96178view13:26, 23 February 2018AnneFriesacherModified description
96153view17:02, 21 February 2018AnneFriesacherNew pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/9/91/WP4220_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/9/91/WP4220_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 106196)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
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