mRNA, protein, and metabolite inducation pathway by cyclosporin A (Homo sapiens)

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(Replaced secondary ChEBI identifiers with primary identifiers.)
Current revision (12:10, 16 August 2019) (view source)
(HMDB identifier normalization)
 
Line 119: Line 119:
   <DataNode TextLabel="ADP" GraphId="ddbfd" Type="Metabolite">
   <DataNode TextLabel="ADP" GraphId="ddbfd" Type="Metabolite">
     <Graphics CenterX="242.99535359899232" CenterY="742.8613429936473" Width="33.571428571428584" Height="25.0" ZOrder="32788" FontSize="12" Valign="Middle" Color="0000ff" />
     <Graphics CenterX="242.99535359899232" CenterY="742.8613429936473" Width="33.571428571428584" Height="25.0" ZOrder="32788" FontSize="12" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB01341" />
+
     <Xref Database="HMDB" ID="HMDB0001341" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="SLC7A11" GraphId="b02b9" Type="GeneProduct">
   <DataNode TextLabel="SLC7A11" GraphId="b02b9" Type="GeneProduct">
Line 135: Line 135:
   <DataNode TextLabel="L-cysteine" GraphId="d820e" Type="Metabolite">
   <DataNode TextLabel="L-cysteine" GraphId="d820e" Type="Metabolite">
     <Graphics CenterX="413.52811466372657" CenterY="621.0" Width="90.0" Height="25.0" ZOrder="32793" FontSize="12" Valign="Middle" Color="0000ff" />
     <Graphics CenterX="413.52811466372657" CenterY="621.0" Width="90.0" Height="25.0" ZOrder="32793" FontSize="12" Valign="Middle" Color="0000ff" />
-
     <Xref Database="HMDB" ID="HMDB00574" />
+
     <Xref Database="HMDB" ID="HMDB0000574" />
   </DataNode>
   </DataNode>
   <Interaction GraphId="id13f185e9">
   <Interaction GraphId="id13f185e9">
Line 408: Line 408:
   <InfoBox CenterX="0.0" CenterY="0.0" />
   <InfoBox CenterX="0.0" CenterY="0.0" />
   <Biopax>
   <Biopax>
 +
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 +
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">xenobiotic metabolic pathway</bp:TERM>
 +
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0001229</bp:ID>
 +
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
 +
    </bp:openControlledVocabulary>
     <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="a4c">
     <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="a4c">
       <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">23238060</bp:ID>
       <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">23238060</bp:ID>
Line 442: Line 447:
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Jennings P</bp:AUTHORS>
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Jennings P</bp:AUTHORS>
     </bp:PublicationXref>
     </bp:PublicationXref>
-
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 
-
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">xenobiotic metabolic pathway</bp:TERM>
 
-
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0001229</bp:ID>
 
-
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
 
-
    </bp:openControlledVocabulary>
 
   </Biopax>
   </Biopax>
</Pathway>
</Pathway>

Current revision

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
106206view12:10, 16 August 2019MaintBotHMDB identifier normalization
96732view08:07, 1 April 2018EgonwReplaced secondary ChEBI identifiers with primary identifiers.
94203view20:58, 25 August 2017DeSlAnnotated metabolite nodes with missing IDs.
92352view07:26, 29 May 2017FehrhartAdded some annotations
91623view18:35, 24 March 2017Khanspersconnected one interaction
91027view22:56, 22 December 2016EgonwMore content of the figure.
91002view12:46, 20 December 2016ElisaAll lines are connected
90927view16:27, 18 December 2016EgonwOntology Term : 'xenobiotic metabolic pathway' added !
90926view16:19, 18 December 2016EgonwModified description
90925view16:17, 18 December 2016EgonwModified title
90924view16:15, 18 December 2016EgonwNew pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/6/6a/WP3953_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/6/6a/WP3953_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 106206)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
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