WikiPathways Academy: met-1-last (Homo sapiens)

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(Corrected the identifier for (S)-2,3-epoxysqualene)
(Pathway uploaded)
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<?xml version="1.0" encoding="UTF-8"?><Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="WikiPathways Academy: met-1-last" Organism="Homo sapiens">
+
<?xml version="1.0" encoding="UTF-8"?>
 +
<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="WikiPathways Academy: met-1-last" Organism="Homo sapiens">
   <Comment Source="WikiPathways-description">Do not modify or delete. This pathway is part of the collection of content used by [https://wikipathways.github.io/academy/ WikiPathways Academy].</Comment>
   <Comment Source="WikiPathways-description">Do not modify or delete. This pathway is part of the collection of content used by [https://wikipathways.github.io/academy/ WikiPathways Academy].</Comment>
   <BiopaxRef>ec9</BiopaxRef>
   <BiopaxRef>ec9</BiopaxRef>
Line 8: Line 9:
   <BiopaxRef>cdc</BiopaxRef>
   <BiopaxRef>cdc</BiopaxRef>
   <BiopaxRef>e73</BiopaxRef>
   <BiopaxRef>e73</BiopaxRef>
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   <DataNode TextLabel="NSDHL" GraphId="a12" Type="GeneProduct" GroupRef="b39b6">
   <DataNode TextLabel="NSDHL" GraphId="a12" Type="GeneProduct" GroupRef="b39b6">
     <Comment Source="GenMAPP remarks">NAD(P) dependent steroid dehydrogenase-like</Comment>
     <Comment Source="GenMAPP remarks">NAD(P) dependent steroid dehydrogenase-like</Comment>
-
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="NSDHL | NAD(P) dependent steroid dehydrogenase-..."/>
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="NSDHL | NAD(P) dependent steroid dehydrogenase-..." />
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     <Xref Database="Entrez Gene" ID="50814"/>
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     <Xref Database="Entrez Gene" ID="50814" />
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   </DataNode>
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   <DataNode TextLabel="(S)-2,3-Epoxysqualene" GraphId="a6667" Type="Metabolite">
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     <Xref Database="Wikidata" ID="Q27453274"/>
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     <Xref Database="Wikidata" ID="Q27453274" />
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   </DataNode>
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   <DataNode TextLabel="Mevalonic acid" GraphId="a6a21" Type="Metabolite">
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     <Xref Database="CAS" ID="150-97-0"/>
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     <Xref Database="CAS" ID="150-97-0" />
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   </DataNode>
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     <Xref Database="CAS" ID="13058-04-3" />
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   <DataNode TextLabel="FDPS" GraphId="aa8" Type="GeneProduct">
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     <Xref Database="Entrez Gene" ID="2224"/>
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   </DataNode>
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   <DataNode TextLabel="HMGCS1" GraphId="b21" Type="GeneProduct">
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="HMGCS1 | 3-hydroxy-3-methylglutaryl-Coenzyme A ..."/>
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   <DataNode TextLabel="MSMO1" GraphId="b31" Type="GeneProduct" GroupRef="b39b6">
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="SC4MOL | sterol-C4-methyl oxidase-like"/>
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     <Xref Database="Entrez Gene" ID="6307" />
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   <DataNode TextLabel="Lathosterol" GraphId="b63" Type="Metabolite">
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     <Xref Database="CAS" ID="80-99-9"/>
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     <Xref Database="CAS" ID="80-99-9" />
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   <DataNode TextLabel="SQLE" GraphId="b6d" Type="GeneProduct">
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="SQLE | squalene epoxidase"/>
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="SQLE | squalene epoxidase" />
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     <Xref Database="Entrez Gene" ID="6713"/>
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     <Xref Database="Entrez Gene" ID="6713" />
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   </DataNode>
   <DataNode TextLabel="Lanosterin" GraphId="b6fae" Type="Metabolite">
   <DataNode TextLabel="Lanosterin" GraphId="b6fae" Type="Metabolite">
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     <Xref Database="CAS" ID="79-63-0"/>
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     <Xref Database="CAS" ID="79-63-0" />
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  <DataNode TextLabel="Cholesterol" GraphId="bf87b" Type="Metabolite">
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    <Graphics CenterX="564.0" CenterY="95.0" Width="90.0" Height="25.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff" />
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    <Xref Database="HMDB" ID="HMDB00067" />
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   </DataNode>
   <DataNode TextLabel="Mevalonic acid 5-pyrophosphate" GraphId="c3220" Type="Metabolite">
   <DataNode TextLabel="Mevalonic acid 5-pyrophosphate" GraphId="c3220" Type="Metabolite">
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     <Xref Database="CAS" ID="1492-08-6" />
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   <DataNode TextLabel="IDI1" GraphId="c3b" Type="GeneProduct">
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="IDI1 | isopentenyl-diphosphate delta isomerase" />
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   <DataNode TextLabel="MVD" GraphId="c55" Type="GeneProduct">
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="MVD | mevalonate (diphospho) decarboxylase"/>
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     <Xref Database="Entrez Gene" ID="4597"/>
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     <Xref Database="Entrez Gene" ID="4597" />
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   <DataNode TextLabel="CYP51A1" GraphId="d4d" Type="GeneProduct" GroupRef="b39b6">
   <DataNode TextLabel="CYP51A1" GraphId="d4d" Type="GeneProduct" GroupRef="b39b6">
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="CYP51A1 | cytochrome P450 family 51 subfamily..."/>
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     <Xref Database="Entrez Gene" ID="1595"/>
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     <Xref Database="Entrez Gene" ID="1595" />
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   <DataNode TextLabel="HMGCR" GraphId="d8b" Type="GeneProduct">
   <DataNode TextLabel="HMGCR" GraphId="d8b" Type="GeneProduct">
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="HMGCR | 3-hydroxy-3-methylglutaryl-Coenzyme A r..."/>
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     <Xref Database="Entrez Gene" ID="3156"/>
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   <DataNode TextLabel="7-Dehydrocholesterol" GraphId="d931a" Type="Metabolite">
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     <Xref Database="CAS" ID="434-16-2"/>
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     <Xref Database="CAS" ID="434-16-2" />
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   <DataNode TextLabel="isopentenyl pyrophosphate" GraphId="db29a" Type="Metabolite">
   <DataNode TextLabel="isopentenyl pyrophosphate" GraphId="db29a" Type="Metabolite">
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     <Xref Database="CAS" ID="358-71-4" />
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  <DataNode TextLabel="DHCR7" GraphId="db432" Type="GeneProduct">
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    <Graphics CenterX="671.0" CenterY="140.0" Width="90.0" Height="25.0" ZOrder="32768" FontSize="12" Valign="Middle" />
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    <Xref Database="Ensembl" ID="ENSG00000172893" />
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   <DataNode TextLabel="PMVK" GraphId="e5c" Type="GeneProduct">
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="PMVK | phosphomevalonate kinase"/>
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="PMVK | phosphomevalonate kinase" />
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     <Xref Database="Entrez Gene" ID="10654"/>
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     <Xref Database="Entrez Gene" ID="10654" />
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   <DataNode TextLabel="HMG-CoA" GraphId="e89f4" Type="Metabolite">
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     <Xref Database="HMDB" ID="HMDB01375" />
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     <Xref Database="CAS" ID="6699-20-3" />
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   <DataNode TextLabel="Squalene" GraphId="f02" Type="Metabolite">
   <DataNode TextLabel="Squalene" GraphId="f02" Type="Metabolite">
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     <Xref Database="CAS" ID="111-02-4" />
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     <Attribute Key="org.pathvisio.model.BackpageHead" Value="MVK | mevalonate kinase (mevalonic aciduria)"/>
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</Pathway>

Revision as of 12:49, 11 June 2019

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
106142view12:04, 16 August 2019MaintBotHMDB identifier normalization
104750view12:49, 11 June 2019CydpkmzPathway uploaded
102423view10:43, 23 December 2018EgonwCorrected the identifier for (S)-2,3-epoxysqualene
91298view22:38, 23 January 2017KhanspersQuick edit to datanode annotation or property
90679view23:16, 6 December 2016Khanspersupdated node sizing and font
90658view18:58, 4 December 2016AlexanderPicoModified title
90541view21:35, 22 November 2016KhanspersModified description
90371view00:14, 9 November 2016KhanspersModified title
90370view00:13, 9 November 2016KhanspersNew pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/6/6e/WP3907_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/6/6e/WP3907_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 104750)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
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