Epigallocatechin-3-O-gallate / Epigallocatechin / Epicatechin breakdown pathway (Homo sapiens)

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(Checked arrows - added lit ref to tea compounds (Roowi et al))
Current revision (12:09, 16 August 2019) (view source)
(HMDB identifier normalization)
 
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     <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="fe0">
       <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">22827565</bp:ID>
       <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">22827565</bp:ID>
Line 337: Line 350:
     </bp:PublicationXref>
     </bp:PublicationXref>
     <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
     <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
-
       <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">xenobiotic metabolic pathway</bp:TERM>
+
       <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">classic metabolic pathway</bp:TERM>
-
       <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0001229</bp:ID>
+
       <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000002</bp:ID>
       <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
       <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
     </bp:openControlledVocabulary>
     </bp:openControlledVocabulary>
-
    <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="ff6">
 
-
      <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">20041649</bp:ID>
 
-
      <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB>
 
-
      <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Green tea flavan-3-ols: colonic degradation and urinary excretion of catabolites by humans.</bp:TITLE>
 
-
      <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">J Agric Food Chem</bp:SOURCE>
 
-
      <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2010</bp:YEAR>
 
-
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Roowi S</bp:AUTHORS>
 
-
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Stalmach A</bp:AUTHORS>
 
-
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Mullen W</bp:AUTHORS>
 
-
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Lean ME</bp:AUTHORS>
 
-
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Edwards CA</bp:AUTHORS>
 
-
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Crozier A</bp:AUTHORS>
 
-
    </bp:PublicationXref>
 
   </Biopax>
   </Biopax>
</Pathway>
</Pathway>

Current revision

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
106198view12:09, 16 August 2019MaintBotHMDB identifier normalization
86207view10:41, 6 July 2016JjjvanderhooftChecked arrows - added lit ref to tea compounds (Roowi et al)
86203view07:10, 6 July 2016MaintBotAdded missing HMDB prefixes in the IDs.
86202view07:08, 6 July 2016MaintBotModified description
86193view17:55, 5 July 2016JjjvanderhooftModified description
86192view17:53, 5 July 2016MaintBotOntology Term : 'classic metabolic pathway' added !
86191view17:53, 5 July 2016MaintBotOntology Term : 'xenobiotic metabolic pathway' added !
86190view17:42, 5 July 2016JjjvanderhooftModified description
86189view15:18, 5 July 2016JjjvanderhooftModified title
86188view15:15, 5 July 2016JjjvanderhooftVersion 1 (copied from paper)
86187view15:14, 5 July 2016JjjvanderhooftPeriodical save, work in progress
86186view15:03, 5 July 2016JjjvanderhooftPeriodical save, work in progress
86185view14:52, 5 July 2016JjjvanderhooftPeriodical save, work in progress
86184view14:42, 5 July 2016JjjvanderhooftPeriodical save, work in progress
86183view14:28, 5 July 2016JjjvanderhooftSpecify description
86182view14:27, 5 July 2016JjjvanderhooftSpecify description
86181view14:20, 5 July 2016JjjvanderhooftSpecify description
86180view14:12, 5 July 2016JjjvanderhooftPeriodical save, work in progress
86179view14:02, 5 July 2016JjjvanderhooftPeriodical save, work in progress
86178view13:51, 5 July 2016JjjvanderhooftPeriodical save, work in progress
86177view13:39, 5 July 2016JjjvanderhooftPeriodical save, work in progress
86176view13:28, 5 July 2016JjjvanderhooftPeriodical save, work in progress
86175view13:18, 5 July 2016JjjvanderhooftPeriodical save, work in progress
86174view13:07, 5 July 2016JjjvanderhooftNew pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/9/90/WP3682_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/9/90/WP3682_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 106198)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
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