Human metabolism overview (Homo sapiens)

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(Modified description)
Current revision (13:32, 9 November 2019) (view source)
(Fixed char encoding issues and some spelling errors.)
 
Line 67: Line 67:
     <Xref Database="KEGG Compound" ID="C02990"/>
     <Xref Database="KEGG Compound" ID="C02990"/>
   </DataNode>
   </DataNode>
-
   <DataNode TextLabel="α-Amino acid" GraphId="b3929" Type="Metabolite">
+
   <DataNode TextLabel="α-Amino acid" GraphId="b3929" Type="Metabolite">
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     <Xref Database="KEGG Compound" ID="C00151"/>
     <Xref Database="KEGG Compound" ID="C00151"/>
Line 75: Line 75:
     <Xref Database="KEGG Compound" ID="C00116"/>
     <Xref Database="KEGG Compound" ID="C00116"/>
   </DataNode>
   </DataNode>
-
   <DataNode TextLabel="Arganinosuccinic" GraphId="b8a39" Type="Metabolite">
+
   <DataNode TextLabel="Argininosuccinic" GraphId="b8a39" Type="Metabolite">
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     <Xref Database="KEGG Compound" ID="C00122"/>
+
     <Xref Database="ChEBI" ID="CHEBI:15682"/>
   </DataNode>
   </DataNode>
   <DataNode TextLabel="Lysophosphatic acid" GraphId="b8aa0" Type="Metabolite">
   <DataNode TextLabel="Lysophosphatic acid" GraphId="b8aa0" Type="Metabolite">
Line 295: Line 295:
     <Xref Database="KEGG Compound" ID="C00332"/>
     <Xref Database="KEGG Compound" ID="C00332"/>
   </DataNode>
   </DataNode>
-
   <DataNode TextLabel="Arganine" GraphId="fdc49" Type="Metabolite">
+
   <DataNode TextLabel="Arginine" GraphId="fdc49" Type="Metabolite">
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     <Xref Database="KEGG Compound" ID="C00062"/>
Line 319: Line 319:
     <Xref Database="KEGG Compound" ID="C00036"/>
     <Xref Database="KEGG Compound" ID="C00036"/>
   </DataNode>
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-
   <DataNode TextLabel="α-amino acid" GraphId="dfa3d" Type="Metabolite">
+
   <DataNode TextLabel="α-amino acid" GraphId="dfa3d" Type="Metabolite">
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     <Xref Database="KEGG Compound" ID="C00151"/>
Line 607: Line 607:
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   <DataNode TextLabel="α-Amino acid" GraphId="d1923" Type="Metabolite">
+
   <DataNode TextLabel="α-Amino acid" GraphId="d1923" Type="Metabolite">
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Line 615: Line 615:
     <Xref Database="KEGG Compound" ID="C00161"/>
     <Xref Database="KEGG Compound" ID="C00161"/>
   </DataNode>
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-
   <DataNode TextLabel="α-Amino acid" GraphId="c9a0c" Type="Metabolite">
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Line 631: Line 631:
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   <DataNode TextLabel="α-Amino acid" GraphId="b51d7" Type="Metabolite">
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Line 647: Line 647:
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   <DataNode TextLabel="α-Amino acid" GraphId="cdb5a" Type="Metabolite">
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   <DataNode TextLabel="α-Amino acid" GraphId="cdb5a" Type="Metabolite">
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Line 2,326: Line 2,326:
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   <Label TextLabel="Keton bodies metabolism" GraphId="a577d">
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   <Label TextLabel="Ketone bodies metabolism" GraphId="a577d">
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   <Label TextLabel="β-Oxidation" GraphId="ade34">
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   <Label TextLabel="β-Oxidation" GraphId="ade34">
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Line 2,338: Line 2,338:
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   <Label TextLabel="Pentose Phospahtes Pathway" GraphId="bb6f2">
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   <Label TextLabel="Pentose Phosphates Pathway" GraphId="bb6f2">
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Line 2,410: Line 2,410:
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Current revision

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
107895view13:32, 9 November 2019EgonwFixed char encoding issues and some spelling errors.
107892view13:09, 9 November 2019EgonwModified description
102898view12:27, 27 January 2019EgonwFixed the identifier for palmitic acid.
94732view14:55, 5 October 2017DeSlConnected unconnected lines.
94722view14:14, 5 October 2017DeSlConnected unconnected lines
88646view15:02, 12 August 2016JmeliusOntology Term : 'classic metabolic pathway' added !
85642view16:54, 4 June 2016EgonwFixed an incomplete ID.
84021view08:41, 11 January 2016CLemmensModified description
84020view08:39, 11 January 2016CLemmensNew pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/f/fe/WP3602_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/f/fe/WP3602_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 107895)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
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