Circadian rhythm related genes (Homo sapiens)

From WikiPathways

Revision as of 06:13, 9 August 2019 by Khanspers (Talk | contribs)
Jump to: navigation, search
transcription factorimmune systemDNA repairsignalingDNA / RNA handlingapoptosisangiogenesisosteoporosisbasic energy metabolismtight junctionscircadian rythm regulationprotein degradationrenal functionblood coagulationcell proliferation /cell cycle regulationhormoneion channelfood / appetite regulationothersepigeneticsneurotransmitter / receptor / functionCRY1ID4EGR1CCAR2HCRTR1NPAS2AGRPRBM4DBPCDK4MTNR1BPRKCGSKP1NCOR1ROCK2RBM4BKCNMA1FBXL3F7SLC6A4CIPCLGR4KCND2HNRNPDNPSDRD2SERPINE1BHLHE41LEPSIX3NTRK3CSNK1EADORA2AMTA1DBPCRTC1OGTTOP2AMAPK8IL6NCOA2PRKAA1STARPRF1AHROPN4ADORA1GSK3BATOH7FASTPH2CIPCNOS2AVPRAI1KDM5ASIRT1PPARGC1ARPS27APRKAA2PTENPROK2DHX9GHRLDRD4NLGN1ARNTL2ID2CARTPTHOMER1NFIL3SFPQATF5HCRTR2SREBF1JUNPMLPASD1PPP1CCNPY2RCLDN4SUV39H1HEBP1NR1D2PROK1MAGEL2THRAP3ADCY1BTBD9FBXW11C1orf51MAGED1OPRL1PHLPP1CHRNB2CIPCAHCYNAMPTPRKCDBPSIK1TIMELESSTOP1HDAC2KMT2ANTRK1ARNTLRELBID3BHLHE40PROX1EGR3PROKR1KCNH7CRHHTR7SIN3AMYBBP1AHDAC3DDX5NR1H3THHS3ST2METTL3GNA11PROKR2NR2F6HNF1BSFTPCNONOTP53MAPK9ADAAANATNRIP1CREMHCRTR2NR1D1CREB1RORANMSPSPC1PPARAQ59FM5BTRCGHRHPPP1CAUBE3ATNFRSF11ACSNK1DNGFRPPP1CBHDAC1CLOCKMC3RCUL1OPN3NKX2-1NPAS2CRXRORBARNTPER2PTGDSSOX14CST3ATF4PAX4GNAQEP300CRY2ADIPOQPRKG2GFPT1CIPCCPT1ADYRK1AFBXL21NCOA2KLF9NOCTSUV39H2ARNT2PPP1CBSLC9A3MAPK10HNRNPUPPARGCIPCMTNR1AJUNDPER3ADCY1HCRTR1UBCUTS2RRORCEZH2MTTPTPH1PER1USP2DRD3DDCDRD1NAGLUPRKDCPRMT5CIARTZFHX3CHRM1TYMSUTS2KLF10UBA52SETXHOMER1NRIP1PROKR2C1orf51AGRPPROKR1SIRT1PROK2BHLHE41PRKAA1


Description

This is currently not a pathway but a list of circadian rhythm related genes and proteins. The source for this information is the gene ontology. The genes and proteins were filtered for "circadian rhythm" annotation (taxon = homo sapiens). According to supplementary information they were clustered in major (neurotransmitters, hormons, appetite regulation and immune system) and minor groups. This pathway is part the CPTAC Assay Portal.

Quality Tags

Ontology Terms

 

Bibliography

No bibliography


History

View all...
CompareRevisionActionTimeUserComment
108782view14:35, 29 January 2020DeSlReplaced A6NMV7 (unreviewed) with O43613 (reviewed) for HCRTR1 geneProduct
106357view21:39, 21 August 2019KhanspersModified description
105555view06:13, 9 August 2019KhanspersModified description
102861view14:37, 25 January 2019DdiglesModified title
87161view19:16, 18 July 2016MkutmonOntology Term : 'regulatory pathway' added !
84573view14:11, 3 March 2016Mkutmonadded missing graph ids
83945view09:07, 5 January 2016FehrhartModified description
83875view15:45, 18 December 2015FehrhartNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
AANATGeneProductQ16613 (Uniprot-TrEMBL)
ADAGeneProductP00813 (Uniprot-TrEMBL)
ADCY1GeneProductQ08828 (Uniprot-TrEMBL)
ADIPOQGeneProductQ15848 (Uniprot-TrEMBL)
ADORA1GeneProductP30542 (Uniprot-TrEMBL)
ADORA2AGeneProductP29274 (Uniprot-TrEMBL)
AGRPGeneProductO00253 (Uniprot-TrEMBL)
AHCYGeneProductP23526 (Uniprot-TrEMBL)
AHRGeneProductP35869 (Uniprot-TrEMBL)
ARNT2GeneProductQ9HBZ2 (Uniprot-TrEMBL)
ARNTL2GeneProductQ8WYA1 (Uniprot-TrEMBL)
ARNTLGeneProductO00327 (Uniprot-TrEMBL)
ARNTGeneProductP27540 (Uniprot-TrEMBL)
ATF4GeneProductP18848 (Uniprot-TrEMBL)
ATF5GeneProductQ9Y2D1 (Uniprot-TrEMBL)
ATOH7GeneProductQ8N100 (Uniprot-TrEMBL)
AVPGeneProductP01185 (Uniprot-TrEMBL)
BHLHE40GeneProductO14503 (Uniprot-TrEMBL)
BHLHE41GeneProductQ9C0J9 (Uniprot-TrEMBL)
BTBD9GeneProductQ96Q07 (Uniprot-TrEMBL)
BTRCGeneProductQ9Y297 (Uniprot-TrEMBL)
C1orf51GeneProductQ5TB13 (Uniprot-TrEMBL)
CARTPTGeneProductQ16568 (Uniprot-TrEMBL)
CCAR2GeneProductQ8N163 (Uniprot-TrEMBL)
CDK4GeneProductP11802 (Uniprot-TrEMBL)
CHRM1GeneProductP11229 (Uniprot-TrEMBL)
CHRNB2GeneProductP17787 (Uniprot-TrEMBL)
CIARTGeneProductQ8N365 (Uniprot-TrEMBL)
CIPCGeneProductG3V3Y7 (Uniprot-TrEMBL)
CIPCGeneProductG3V405 (Uniprot-TrEMBL)
CIPCGeneProductG3V5J4 (Uniprot-TrEMBL)
CIPCGeneProductG3V5Y7 (Uniprot-TrEMBL)
CIPCGeneProductQ9C0C6 (Uniprot-TrEMBL)
CLDN4GeneProductO14493 (Uniprot-TrEMBL)
CLOCKGeneProductO15516 (Uniprot-TrEMBL)
CPT1AGeneProductP50416 (Uniprot-TrEMBL)
CREB1GeneProductP16220 (Uniprot-TrEMBL)
CREMGeneProductQ03060 (Uniprot-TrEMBL)
CRHGeneProductP06850 (Uniprot-TrEMBL)
CRTC1GeneProductQ6UUV9 (Uniprot-TrEMBL)
CRXGeneProductO43186 (Uniprot-TrEMBL)
CRY1GeneProductQ16526 (Uniprot-TrEMBL)
CRY2GeneProductQ49AN0 (Uniprot-TrEMBL)
CSNK1DGeneProductP48730 (Uniprot-TrEMBL)
CSNK1EGeneProductP49674 (Uniprot-TrEMBL)
CST3GeneProductP01034 (Uniprot-TrEMBL)
CUL1GeneProductQ13616 (Uniprot-TrEMBL)
DBPGeneProductM0QXP1 (Uniprot-TrEMBL)
DBPGeneProductQ10586 (Uniprot-TrEMBL)
DDCGeneProductP20711 (Uniprot-TrEMBL)
DDX5GeneProductP17844 (Uniprot-TrEMBL)
DHX9GeneProductQ08211 (Uniprot-TrEMBL)
DRD1GeneProductP21728 (Uniprot-TrEMBL)
DRD2GeneProductP14416 (Uniprot-TrEMBL)
DRD3GeneProductP35462 (Uniprot-TrEMBL)
DRD4GeneProductP21917 (Uniprot-TrEMBL)
DYRK1AGeneProductQ13627 (Uniprot-TrEMBL)
EGR1GeneProductP18146 (Uniprot-TrEMBL)
EGR3GeneProductQ06889 (Uniprot-TrEMBL)
EP300GeneProductQ09472 (Uniprot-TrEMBL)
EZH2GeneProductQ15910 (Uniprot-TrEMBL)
F7GeneProductP08709 (Uniprot-TrEMBL)
FASGeneProductP25445 (Uniprot-TrEMBL)
FBXL21GeneProductENSG00000164616 (Ensembl)
FBXL3GeneProductQ9UKT7 (Uniprot-TrEMBL)
FBXW11GeneProductQ9UKB1 (Uniprot-TrEMBL)
GFPT1GeneProductQ06210 (Uniprot-TrEMBL)
GHRHGeneProductP01286 (Uniprot-TrEMBL)
GHRLGeneProductQ9UBU3 (Uniprot-TrEMBL)
GNA11GeneProductP29992 (Uniprot-TrEMBL)
GNAQGeneProductENSG00000156052 (Ensembl)
GSK3BGeneProductP49841 (Uniprot-TrEMBL)
HCRTR1GeneProductA6NMV7 (Uniprot-TrEMBL)
HCRTR1GeneProductO43613 (Uniprot-TrEMBL)
HCRTR2GeneProductO43614 (Uniprot-TrEMBL)
HDAC1GeneProductQ13547 (Uniprot-TrEMBL)
HDAC2GeneProductQ92769 (Uniprot-TrEMBL)
HDAC3GeneProductO15379 (Uniprot-TrEMBL)
HEBP1GeneProductQ9NRV9 (Uniprot-TrEMBL)
HNF1BGeneProductP35680 (Uniprot-TrEMBL)
HNRNPDGeneProductQ14103 (Uniprot-TrEMBL)
HNRNPUGeneProductQ00839 (Uniprot-TrEMBL)
HOMER1GeneProductQ86YM7 (Uniprot-TrEMBL)
HS3ST2GeneProductQ9Y278 (Uniprot-TrEMBL)
HTR7GeneProductP34969 (Uniprot-TrEMBL)
ID2GeneProductQ02363 (Uniprot-TrEMBL)
ID3GeneProductQ02535 (Uniprot-TrEMBL)
ID4GeneProductP47928 (Uniprot-TrEMBL)
IL6GeneProductP05231 (Uniprot-TrEMBL)
JUNDGeneProductP17535 (Uniprot-TrEMBL)
JUNGeneProductP05412 (Uniprot-TrEMBL)
KCND2GeneProductQ9NZV8 (Uniprot-TrEMBL)
KCNH7GeneProductQ9NS40 (Uniprot-TrEMBL)
KCNMA1GeneProductQ12791 (Uniprot-TrEMBL)
KDM5AGeneProductP29375 (Uniprot-TrEMBL)
KLF10GeneProductQ13118 (Uniprot-TrEMBL)
KLF9GeneProductQ13886 (Uniprot-TrEMBL)
KMT2AGeneProductQ03164 (Uniprot-TrEMBL)
LEPGeneProductP41159 (Uniprot-TrEMBL)
LGR4GeneProductQ9BXB1 (Uniprot-TrEMBL)
MAGED1GeneProductQ9Y5V3 (Uniprot-TrEMBL)
MAGEL2GeneProductENSG00000254585 (Ensembl)
MAPK10GeneProductP53779 (Uniprot-TrEMBL)
MAPK8GeneProductP45983 (Uniprot-TrEMBL)
MAPK9GeneProductP45984 (Uniprot-TrEMBL)
MC3RGeneProductP41968 (Uniprot-TrEMBL)
METTL3GeneProductQ86U44 (Uniprot-TrEMBL)
MTA1GeneProductQ13330 (Uniprot-TrEMBL)
MTNR1AGeneProductP48039 (Uniprot-TrEMBL)
MTNR1BGeneProductP49286 (Uniprot-TrEMBL)
MTTPGeneProductE9PBP6 (Uniprot-TrEMBL)
MYBBP1AGeneProductQ9BQG0 (Uniprot-TrEMBL)
NAGLUGeneProductP54802 (Uniprot-TrEMBL)
NAMPTGeneProductP43490 (Uniprot-TrEMBL)
NCOA2GeneProductQ15596 (Uniprot-TrEMBL)
NCOR1GeneProductO75376 (Uniprot-TrEMBL)
NFIL3GeneProductQ16649 (Uniprot-TrEMBL)
NGFRGeneProductP08138 (Uniprot-TrEMBL)
NKX2-1GeneProductP43699 (Uniprot-TrEMBL)
NLGN1GeneProductQ8N2Q7 (Uniprot-TrEMBL)
NMSGeneProductQ5H8A3 (Uniprot-TrEMBL)
NOCTGeneProductQ9UK39 (Uniprot-TrEMBL)
NONOGeneProductQ15233 (Uniprot-TrEMBL)
NOS2GeneProductP35228 (Uniprot-TrEMBL)
NPAS2GeneProductQ99743 (Uniprot-TrEMBL)
NPSGeneProductP0C0P6 (Uniprot-TrEMBL)
NPY2RGeneProductP49146 (Uniprot-TrEMBL)
NR1D1GeneProductP20393 (Uniprot-TrEMBL)
NR1D2GeneProductQ14995 (Uniprot-TrEMBL)
NR1H3GeneProductQ13133 (Uniprot-TrEMBL)
NR2F6GeneProductP10588 (Uniprot-TrEMBL)
NRIP1GeneProductP48552 (Uniprot-TrEMBL)
NTRK1GeneProductP04629 (Uniprot-TrEMBL)
NTRK3GeneProductQ16288 (Uniprot-TrEMBL)
OGTGeneProductO15294 (Uniprot-TrEMBL)
OPN3GeneProductQ9H1Y3 (Uniprot-TrEMBL)
OPN4GeneProductQ9UHM6 (Uniprot-TrEMBL)
OPRL1GeneProductP41146 (Uniprot-TrEMBL)
PASD1GeneProductQ8IV76 (Uniprot-TrEMBL)
PAX4GeneProductO43316 (Uniprot-TrEMBL)
PER1GeneProductO15534 (Uniprot-TrEMBL)
PER2GeneProductO15055 (Uniprot-TrEMBL)
PER3GeneProductQ8TAR6 (Uniprot-TrEMBL)
PHLPP1GeneProductO60346 (Uniprot-TrEMBL)
PMLGeneProductP29590 (Uniprot-TrEMBL)
PPARAGeneProductQ07869 (Uniprot-TrEMBL)
PPARGC1AGeneProductQ9UBK2 (Uniprot-TrEMBL)
PPARGGeneProductP37231 (Uniprot-TrEMBL)
PPP1CAGeneProductP62136 (Uniprot-TrEMBL)
PPP1CBGeneProductP62140 (Uniprot-TrEMBL)
PPP1CCGeneProductP36873 (Uniprot-TrEMBL)
PRF1GeneProductP14222 (Uniprot-TrEMBL)
PRKAA1GeneProductQ13131 (Uniprot-TrEMBL)
PRKAA2GeneProductP54646 (Uniprot-TrEMBL)
PRKCDBPGeneProductQ969G5 (Uniprot-TrEMBL)
PRKCGGeneProductP05129 (Uniprot-TrEMBL)
PRKDCGeneProductP78527 (Uniprot-TrEMBL)
PRKG2GeneProductQ13237 (Uniprot-TrEMBL)
PRMT5GeneProductO14744 (Uniprot-TrEMBL)
PROK1GeneProductP58294 (Uniprot-TrEMBL)
PROK2GeneProductQ9HC23 (Uniprot-TrEMBL)
PROKR1GeneProductQ8TCW9 (Uniprot-TrEMBL)
PROKR2GeneProductQ8NFJ6 (Uniprot-TrEMBL)
PROX1GeneProductQ92786 (Uniprot-TrEMBL)
PSPC1GeneProductQ8WXF1 (Uniprot-TrEMBL)
PTENGeneProductP60484 (Uniprot-TrEMBL)
PTGDSGeneProductP41222 (Uniprot-TrEMBL)
Q59FM5GeneProductQ59FM5 (Uniprot-TrEMBL)
RAI1GeneProductQ7Z5J4 (Uniprot-TrEMBL)
RBM4BGeneProductQ9BQ04 (Uniprot-TrEMBL)
RBM4GeneProductQ9BWF3 (Uniprot-TrEMBL)
RELBGeneProductQ01201 (Uniprot-TrEMBL)
ROCK2GeneProductO75116 (Uniprot-TrEMBL)
RORAGeneProductP35398 (Uniprot-TrEMBL)
RORBGeneProductQ92753 (Uniprot-TrEMBL)
RORCGeneProductP51449 (Uniprot-TrEMBL)
RPS27AGeneProductP62979 (Uniprot-TrEMBL)
SERPINE1GeneProductP05121 (Uniprot-TrEMBL)
SETXGeneProductQ7Z333 (Uniprot-TrEMBL)
SFPQGeneProductP23246 (Uniprot-TrEMBL)
SFTPCGeneProductP11686 (Uniprot-TrEMBL)
SIK1GeneProductP57059 (Uniprot-TrEMBL)
SIN3AGeneProductQ96ST3 (Uniprot-TrEMBL)
SIRT1GeneProductQ96EB6 (Uniprot-TrEMBL)
SIX3GeneProductO95343 (Uniprot-TrEMBL)
SKP1GeneProductP63208 (Uniprot-TrEMBL)
SLC6A4GeneProductP31645 (Uniprot-TrEMBL)
SLC9A3GeneProductP48764 (Uniprot-TrEMBL)
SOX14GeneProductO95416 (Uniprot-TrEMBL)
SREBF1GeneProductP36956 (Uniprot-TrEMBL)
STARGeneProductP49675 (Uniprot-TrEMBL)
SUV39H1GeneProductO43463 (Uniprot-TrEMBL)
SUV39H2GeneProductQ9H5I1 (Uniprot-TrEMBL)
THGeneProductP07101 (Uniprot-TrEMBL)
THRAP3GeneProductQ9Y2W1 (Uniprot-TrEMBL)
TIMELESSGeneProductQ9UNS1 (Uniprot-TrEMBL)
TNFRSF11AGeneProductQ9Y6Q6 (Uniprot-TrEMBL)
TOP1GeneProductP11387 (Uniprot-TrEMBL)
TOP2AGeneProductP11388 (Uniprot-TrEMBL)
TP53GeneProductP04637 (Uniprot-TrEMBL)
TPH1GeneProductP17752 (Uniprot-TrEMBL)
TPH2GeneProductQ8IWU9 (Uniprot-TrEMBL)
TYMSGeneProductP04818 (Uniprot-TrEMBL)
UBA52GeneProductP62987 (Uniprot-TrEMBL)
UBCGeneProductP0CG48 (Uniprot-TrEMBL)
UBE3AGeneProductQ05086 (Uniprot-TrEMBL)
USP2GeneProductO75604 (Uniprot-TrEMBL)
UTS2GeneProductO95399 (Uniprot-TrEMBL)
UTS2RGeneProductQ9UKP6 (Uniprot-TrEMBL)
ZFHX3GeneProductQ15911 (Uniprot-TrEMBL)

Annotated Interactions

No annotated interactions

Personal tools