Catalytic cycle of mammalian FMOs (Bos taurus)

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(HMDB identifier normalization)
Current revision (09:44, 10 November 2019) (view source)
(Replaced a sub-optimal PubChem CID with a ChEBI identifier.)
 
Line 79: Line 79:
   <DataNode TextLabel="FADH2" GraphId="f4048" Type="Metabolite" GroupRef="fe818">
   <DataNode TextLabel="FADH2" GraphId="f4048" Type="Metabolite" GroupRef="fe818">
     <Graphics CenterX="247.0" CenterY="362.0" Width="80.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
     <Graphics CenterX="247.0" CenterY="362.0" Width="80.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
-
     <Xref Database="PubChem-compound" ID="25244872" />
+
     <Xref Database="ChEBI" ID="CHEBI:17877" />
   </DataNode>
   </DataNode>
   <DataNode TextLabel="FAD-OOH" GraphId="fa807" Type="Metabolite" GroupRef="c4d6f">
   <DataNode TextLabel="FAD-OOH" GraphId="fa807" Type="Metabolite" GroupRef="c4d6f">

Current revision

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

CompareRevisionActionTimeUserComment
107913view09:44, 10 November 2019EgonwReplaced a sub-optimal PubChem CID with a ChEBI identifier.
106019view11:54, 16 August 2019MaintBotHMDB identifier normalization
80936view15:31, 30 June 2015MkutmonNew pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/a/af/WP3281_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/a/af/WP3281_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 107913)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
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