Selenium Metabolism and Selenoproteins (Homo sapiens)

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(Modified description)
Current revision (12:10, 16 August 2019) (view source)
(HMDB identifier normalization)
 
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<?xml version="1.0" encoding="UTF-8"?>
<?xml version="1.0" encoding="UTF-8"?>
<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Selenium Metabolism and Selenoproteins" Last-Modified="10/16/2013" Organism="Homo sapiens" License="CC BY 2.0">
<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Selenium Metabolism and Selenoproteins" Last-Modified="10/16/2013" Organism="Homo sapiens" License="CC BY 2.0">
-
   <Comment Source="GenMAPP notes"/>
+
   <Comment Source="GenMAPP notes"></Comment>
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   <Comment Source="GenMAPP remarks"/>
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   <Comment Source="GenMAPP remarks"></Comment>
   <Comment Source="WikiPathways-description">* Comments belonging to specific genes on the Selenoprotein pathway
   <Comment Source="WikiPathways-description">* Comments belonging to specific genes on the Selenoprotein pathway
** TRXND3 gene: Although the geneID is correct, the sequence of this gene was guessed by analogy.
** TRXND3 gene: Although the geneID is correct, the sequence of this gene was guessed by analogy.
Line 17: Line 17:
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      <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Elemental selenium at nano size possesses lower toxicity without compromising the fundamental effect on selenoenzymes: comparison with selenomethionine in mice.</bp:TITLE>
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      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Yu H</bp:AUTHORS>
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      <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Effectiveness of selenium supplements in a low-selenium area of China.</bp:TITLE>
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      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Hill KE</bp:AUTHORS>
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      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Byrne DW</bp:AUTHORS>
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      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Xu J</bp:AUTHORS>
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      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Burk RF</bp:AUTHORS>
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Line 729: Line 764:
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-
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-
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Line 753: Line 774:
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Berry MJ</bp:AUTHORS>
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Berry MJ</bp:AUTHORS>
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       <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB>
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       <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The role of selenium in chronic disease.</bp:TITLE>
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       <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Human selenoproteins at a glance.</bp:TITLE>
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       <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Nutr Clin Pract</bp:SOURCE>
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       <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Cell Mol Life Sci</bp:SOURCE>
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       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Boosalis MG</bp:AUTHORS>
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       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Gromer S</bp:AUTHORS>
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      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Lee BL</bp:AUTHORS>
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      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Jacob J</bp:AUTHORS>
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       <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Tissue selenium levels in selenium-supplemented rats and their relevance in mammary cancer protection.</bp:TITLE>
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Line 794: Line 812:
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Groot E</bp:AUTHORS>
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Groot E</bp:AUTHORS>
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-
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Line 816: Line 823:
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Esaki N</bp:AUTHORS>
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Esaki N</bp:AUTHORS>
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     <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="b00">
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       <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB>
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       <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Tissue selenium levels in selenium-supplemented rats and their relevance in mammary cancer protection.</bp:TITLE>
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       <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string"></bp:TITLE>
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       <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Carcinogenesis</bp:SOURCE>
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       <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">1989</bp:YEAR>
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       <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Effectiveness of selenium supplements in a low-selenium area of China.</bp:TITLE>
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       <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Temporal changes in tissue glutathione in response to chemical form, dose, and duration of selenium treatment. Relevance to cancer chemoprevention by selenium.</bp:TITLE>
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Current revision

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Pathway history

View all...
CompareRevisionActionTimeUserComment
106208view12:10, 16 August 2019MaintBotHMDB identifier normalization
105807view22:53, 15 August 2019KhanspersModified description
71888view09:47, 22 October 2013Mkutmonchanged FOS from Unknown to GeneProduct
71250view20:37, 16 October 2013MaintBotAutomated update of data sources
68932view17:34, 8 July 2013MaintBotUpdated to 2013 gpml schema
68048view12:08, 29 June 2013EgonwAdded missing metabolite identifiers.
61686view22:01, 16 April 2013MaintBotupdated swissprot data source to uniprot/trembl
59121view22:28, 21 February 2013MaintBotUpdated Ensembl and UniProt data source
46518view04:00, 10 February 2012Strandadded selenite identifier
46517view03:58, 10 February 2012Strandcorrected RefSeq identifier
46516view03:57, 10 February 2012Strandcorrect RefSeq identifiers
46500view23:22, 6 February 2012AlexanderPicofixed a refseq id
45019view18:38, 6 October 2011ThomasOntology Term : 'selenoamino acid metabolic pathway' added !
41081view23:20, 1 March 2011MaintBotRemoved redundant pathway information and comments
39764view07:43, 17 January 2011AlexanderPicomore complete title
38852view17:58, 24 September 2010Khanspers
38755view22:36, 23 September 2010KhanspersChanged nucleus
37163view19:21, 19 May 2010EveloAdded backpages for selenite and hydrogen selenide
37162view19:12, 19 May 2010EveloCosmetic
35187view15:05, 11 February 2010EveloCosmetic changes and some backpages
35168view14:51, 11 February 2010EveloPeriodical save, work in progress
35155view14:25, 11 February 2010EveloPeriodical save, work in progress
35145view14:15, 11 February 2010EveloPeriodical save, work in progress
35135view14:04, 11 February 2010EveloPeriodical save, work in progress
32383view16:56, 15 August 2009MaintBotFixed text labels
32026view13:24, 14 August 2009MaintBotFixed group labels
30051view22:51, 29 June 2009Andraconnect line
30050view22:46, 29 June 2009AndraAdded references
29723view21:41, 1 June 2009Khanspersupdated Ensembl refs
28969view09:56, 19 March 2009SusanChanged NFKB-p65 ID
28934view11:26, 16 March 2009EveloPeriodical save, work in progress
28784view13:14, 6 March 2009EveloModified description
28781view13:02, 6 March 2009EveloAdded two gene ID's
28131view19:45, 27 January 2009KhanspersRemoved species code from name
20735view11:29, 14 November 2008MaintBot[[Pathway:Homo sapiens:Selenoproteins]] moved to [[Pathway:WP28]]: Moved to stable identifier
19220view14:57, 24 September 2008SusanGraphical adaptation
15890view14:12, 6 June 2008EgoyenecheaPeriodical save, work in progress
14945view16:09, 24 May 2008MartijnVanIersellinked up
14943view15:58, 24 May 2008MartijnVanIerselCreated metabolites
8382view13:46, 7 January 2008MaintBot[[Pathway:Human:Selenoproteins]] moved to [[Pathway:Homo sapiens:Selenoproteins]]: Renaming species
7808view16:19, 18 December 2007MaintBotfixed category names
7496view13:10, 4 November 2007Thomastransfered literature references to GPML
7387view12:42, 4 November 2007MaintBotAdded categories to GPML
7189view12:31, 4 November 2007MaintBotAdded description to GPML
7104view13:08, 10 October 2007Susantest
7001view12:09, 9 August 2007SusanChanged gamma lyase
6970view08:57, 30 July 2007137.120.89.28Added/changed transcription factors
6967view08:13, 30 July 2007Thomas[[GPML:Human:Hs Selenoproteins]] moved to [[GPML:Human:Selenoproteins]]: removed Hs prefix (old GenMAPP naming convention)
6920view09:08, 24 July 2007SusanNew pathway
6919view09:02, 24 July 2007SusanNew pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/6/63/WP28_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/6/63/WP28_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 106208)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
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