WikiPathways Test: Metabolites and Metabolic Interactions (Homo sapiens)
From WikiPathways
(Difference between revisions)
(Updated character in lit refs.) |
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<DataNode TextLabel="Aspirin (HMDB old IDs)" GraphId="d973d" Type="Metabolite"> | <DataNode TextLabel="Aspirin (HMDB old IDs)" GraphId="d973d" Type="Metabolite"> | ||
<Graphics CenterX="351.74074074074053" CenterY="194.17816017874011" Width="144.5" Height="20.0" ZOrder="32822" FontSize="10" Valign="Middle" Color="0000ff" /> | <Graphics CenterX="351.74074074074053" CenterY="194.17816017874011" Width="144.5" Height="20.0" ZOrder="32822" FontSize="10" Valign="Middle" Color="0000ff" /> | ||
- | <Xref Database="HMDB" ID=" | + | <Xref Database="HMDB" ID="HMDB0001879" /> |
</DataNode> | </DataNode> | ||
<DataNode TextLabel="TG(15:0/i-15:0/i-21:0)
(HMDB new IDs, no sec.)" GraphId="cbe82" Type="Metabolite"> | <DataNode TextLabel="TG(15:0/i-15:0/i-21:0)
(HMDB new IDs, no sec.)" GraphId="cbe82" Type="Metabolite"> | ||
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<InfoBox CenterX="0.0" CenterY="0.0" /> | <InfoBox CenterX="0.0" CenterY="0.0" /> | ||
<Biopax> | <Biopax> | ||
+ | <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="a97"> | ||
+ | <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">23892182</bp:ID> | ||
+ | <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB> | ||
+ | <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Metabolomics and systems pharmacology: why and how to model the human metabolic network for drug discovery.</bp:TITLE> | ||
+ | <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Drug Discov Today</bp:SOURCE> | ||
+ | <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2014</bp:YEAR> | ||
+ | <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Kell DB</bp:AUTHORS> | ||
+ | <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Goodacre R</bp:AUTHORS> | ||
+ | </bp:PublicationXref> | ||
<bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="ad9"> | <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="ad9"> | ||
<bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">29136241</bp:ID> | <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">29136241</bp:ID> | ||
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<bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pico AR</bp:AUTHORS> | <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pico AR</bp:AUTHORS> | ||
<bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Willighagen EL</bp:AUTHORS> | <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Willighagen EL</bp:AUTHORS> | ||
+ | </bp:PublicationXref> | ||
+ | <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="e28"> | ||
+ | <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">25110584</bp:ID> | ||
+ | <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB> | ||
+ | <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BridgeDb app: unifying identifier mapping services for Cytoscape.</bp:TITLE> | ||
+ | <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">F1000Res</bp:SOURCE> | ||
+ | <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2014</bp:YEAR> | ||
+ | <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Gao J</bp:AUTHORS> | ||
+ | <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Zhang C</bp:AUTHORS> | ||
+ | <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">van Iersel M</bp:AUTHORS> | ||
+ | <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Zhang L</bp:AUTHORS> | ||
+ | <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Xu D</bp:AUTHORS> | ||
+ | <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Schultz N</bp:AUTHORS> | ||
+ | <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">R Pico A</bp:AUTHORS> | ||
</bp:PublicationXref> | </bp:PublicationXref> | ||
<bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="ce7"> | <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="ce7"> | ||
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<bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Conklin BR</bp:AUTHORS> | <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Conklin BR</bp:AUTHORS> | ||
<bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Evelo CT</bp:AUTHORS> | <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Evelo CT</bp:AUTHORS> | ||
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</bp:PublicationXref> | </bp:PublicationXref> | ||
<bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="bb4"> | <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="bb4"> | ||
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<bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2016</bp:YEAR> | <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2016</bp:YEAR> | ||
<bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wishart DS</bp:AUTHORS> | <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wishart DS</bp:AUTHORS> | ||
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</bp:PublicationXref> | </bp:PublicationXref> | ||
</Biopax> | </Biopax> | ||
</Pathway> | </Pathway> |
Revision as of 12:09, 16 August 2019
Error rendering pathway page
This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.
Pathway history
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Error details
exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/5/57/WP2582_prev.svg: <BR>Status:1 <BR>Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source) <BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/5/57/WP2582_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace: #0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...') #1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg') #2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg') #3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState)) #4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array) #5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array) #6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 106200) #7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true) #8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true) #9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...') #10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision() #11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false) #12 /var/www/wikipathways/includes/Wiki.php(437): Article->view() #13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest)) #14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest)) #15 {main}