One Carbon Metabolism (Homo sapiens)

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(Modified description)
Current revision (12:06, 16 August 2019) (view source)
(HMDB identifier normalization)
 
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</Comment>
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   <Comment Source="WikiPathways-category">Metabolic Process</Comment>
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     <Comment>KEGG Database Methionine metabolism - Homo sapiens (human)</Comment>
     <Comment>KEGG Database Methionine metabolism - Homo sapiens (human)</Comment>
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     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
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     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
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     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
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     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
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     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
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     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
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     <Comment>KEGG database: Methionine metabolism - Homo sapiens (human)</Comment>
     <Comment>KEGG database: Methionine metabolism - Homo sapiens (human)</Comment>
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     <Comment>KEGG Database Methionine metabolism - Homo sapiens (human)</Comment>
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     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
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     <Comment>KEGG Database Methionine metabolism - Homo sapiens (human)</Comment>
     <Comment>KEGG Database Methionine metabolism - Homo sapiens (human)</Comment>
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     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
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     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
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     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
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     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
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     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
     <Comment>KEGG database: One carbon pool by folate - Homo sapiens (human)</Comment>
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       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Ludwig ML</bp:AUTHORS>
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Ludwig ML</bp:AUTHORS>
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Matthews RG</bp:AUTHORS>
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Matthews RG</bp:AUTHORS>
 +
    </bp:PublicationXref>
 +
    <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="ecf">
 +
      <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">22634633</bp:ID>
 +
      <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB>
 +
      <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Glutaredoxin serves as a reductant for methionine sulfoxide reductases with or without resolving cysteine.</bp:TITLE>
 +
      <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Acta Biochim Biophys Sin (Shanghai)</bp:SOURCE>
 +
      <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2012</bp:YEAR>
 +
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Kim HY</bp:AUTHORS>
 +
    </bp:PublicationXref>
 +
    <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="a48">
 +
      <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">8019414</bp:ID>
 +
      <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB>
 +
      <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The primary structure and properties of thioltransferase (glutaredoxin) from human red blood cells.</bp:TITLE>
 +
      <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Protein Sci</bp:SOURCE>
 +
      <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">1994</bp:YEAR>
 +
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Papov VV</bp:AUTHORS>
 +
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Gravina SA</bp:AUTHORS>
 +
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Mieyal JJ</bp:AUTHORS>
 +
      <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Biemann K</bp:AUTHORS>
     </bp:PublicationXref>
     </bp:PublicationXref>
   </Biopax>
   </Biopax>
</Pathway>
</Pathway>

Current revision

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
106172view12:06, 16 August 2019MaintBotHMDB identifier normalization
105504view05:57, 8 August 2019KhanspersModified description
101824view08:32, 12 November 2018EgonwReplaced an old Uniprot data source with the new one.
98057view06:50, 13 July 2018Fehrhartlayout
97559view15:19, 24 May 2018DeSlRemoved licence number
97558view15:18, 24 May 2018DeSlConnected lines.
97557view15:12, 24 May 2018DeSlChanged KEGG GENE ID to Uniprot
89671view08:13, 24 September 2016EgonwReplaced the CAS for polyglutamate with the ChEBI ID for this metabolite.
85415view11:27, 14 May 2016EgonwMore clean up.
85414view11:04, 14 May 2016EgonwCleaned up two multi-entity reactions.
85413view10:20, 14 May 2016EgonwClean up and mim annotation of catalyses.
85105view11:10, 14 April 2016Garima.thakurAddition of Homocystine
83818view22:16, 11 December 2015AlexanderPicoMerged Emma Beswick's edits from duplicate effort
82712view09:56, 23 October 2015EgonwCleaned up the layout a bit.
82255view11:49, 17 September 2015MirellaKalafatiPeriodical save, work in progress
82228view09:45, 16 September 2015MirellaKalafatiCholine conversion to betaine (by choline dehydrogenase aka CHDH)
82227view09:36, 16 September 2015MirellaKalafatiPeriodical save, work in progress
82226view09:06, 16 September 2015MirellaKalafatiPeriodical save, work in progress
82225view08:55, 16 September 2015MirellaKalafatiPeriodical save, work in progress
82224view08:35, 16 September 2015MirellaKalafatiPeriodical save, work in progress
80389view19:29, 12 June 2015AlexanderPicoReverted to version '23:01, 27 May 2015' by AlexanderPico
80249view08:16, 28 May 2015IamlovePeriodical save, work in progress
80244view06:01, 28 May 2015KhanspersReverted to version '15:46, 2 April 2015' by Khanspers
80150view18:45, 14 May 2015KhanspersAdded mir29 family targeting and associated lit ref
79667view15:46, 2 April 2015EveloChanged "monoglutamate" label to Folate
78552view10:30, 7 January 2015MaintBotadded missing graphIds
68025view08:18, 29 June 2013EgonwAdded a missing metabolite identifiers.
68024view08:08, 29 June 2013EgonwConverted two labels into Metabolite DataNodes.
65710view13:11, 11 June 2013EgonwConverted three labels to metabolite DataNodes.
61699view23:32, 16 April 2013MaintBotupdated data node type "Unkown" to "GeneProduct" for annotated genes
49064view08:35, 4 July 2012Eveloimproved homocysteine annotatopn
45325view20:12, 7 October 2011KhanspersOntology Term : 'folate mediated one-carbon metabolic pathway' added !
41078view23:20, 1 March 2011MaintBotRemoved redundant pathway information and comments
38794view06:48, 24 September 2010Thomaslinked to dna repair pathways
36799view12:04, 4 May 2010EveloMTHFR Riboflavin complex
36797view11:56, 4 May 2010EveloModified description
36795view11:38, 4 May 2010EveloAdded MTR reference
36794view11:29, 4 May 2010EveloModified description
36793view11:12, 4 May 2010EveloAdded more vitamins as metabolites, multiline labels
36792view10:28, 4 May 2010EveloAdded vitamin names to metabolite labels
36779view09:04, 4 May 2010Eveloadded connection
36699view12:09, 16 April 2010MichielMinor edits
36698view12:07, 16 April 2010MichielMinor cleanup
36697view12:03, 16 April 2010MichielAdded metabolites
36696view12:00, 16 April 2010MichielCorrected Cobalamin
36695view11:58, 16 April 2010MichielCorrected reactions
36689view11:08, 15 April 2010Evelocorrected typos in metabolite names
36181view14:36, 5 March 2010EveloPeriodical save, work in progress
35855view17:59, 18 February 2010AlexanderPicotest
34894view00:30, 3 February 2010AlexanderPicoModified description

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/8/8c/WP241_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/8/8c/WP241_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 106172)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
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