Homologous recombination (Homo sapiens)

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Revision as of 09:48, 9 January 2008 by Thomas (Talk | contribs)
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Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
106593view19:34, 10 September 2019KhanspersModified description
105617view04:57, 10 August 2019KhanspersModified description
104834view14:07, 20 June 2019IreneHemelChanged undirected interactions in drawing to graphical lines
68935view17:34, 8 July 2013MaintBotUpdated to 2013 gpml schema
59133view22:37, 21 February 2013MaintBotUpdated Ensembl and UniProt data source
41086view23:20, 1 March 2011MaintBotRemoved redundant pathway information and comments
36295view23:20, 17 March 2010KhanspersModified categories
35578view15:25, 12 February 2010ThomasModified description
35566view15:17, 12 February 2010Thomasadded literature
34748view23:01, 13 January 2010KhanspersAdded connectors
34546view20:01, 21 December 2009Khanspersminor changes
31992view13:14, 14 August 2009MaintBotFixed group labels
29610view12:09, 23 May 2009MartijnVanIerselUpdated ensembl references
21069view11:30, 14 November 2008MaintBot[[Pathway:Homo sapiens:Homologous recombination]] moved to [[Pathway:WP186]]: Moved to stable identifier
14599view06:37, 23 May 2008Thomasgrouped complexes, not much to connect here
10356view03:00, 23 January 2008AlexanderPicoModified categories
9585view09:48, 9 January 2008Thomasmade a start with HR pathway

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/e/ef/WP186_9585.svg:
<BR>Status:1
<BR>Message:[     0.538] Info:  Recognized format [Namespace: prefix "" is mapped to URI "http://genmapp.org/GPML/2007"]
[     0.772] Info:  Document is valid according to the xml schema definition 'GPML2007.xsd'
Warn:  Reference to non existing biopax element found: fc6
Warn:  Reference to non existing biopax element found: f41
Warn:  Reference to non existing biopax element found: af4
Warn:  Reference to non existing biopax element found: def
Exception in thread "main" java.util.ConcurrentModificationException
	at java.util.ArrayList$Itr.checkForComodification(ArrayList.java:866)
	at java.util.ArrayList$Itr.next(ArrayList.java:838)
	at org.pathvisio.core.view.VPathway.fromModel(Unknown Source)
	at org.pathvisio.core.model.BatikImageExporter.doExport(Unknown Source)
	at org.pathvisio.core.Engine.exportPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways/images/9/98/WP186_9585.gpml" "/var/www/wikipathways/images/e/ef/WP186_9585.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio('/var/www/wikipa...', '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/Article.php(3406): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 9585)
#7 /var/www/wikipathways/includes/Article.php(875): Article->outputWikiText('<?xml version="...', false)
#8 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#9 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#10 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#11 {main}
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