Selenium metabolism Selenoproteins (Rattus norvegicus)

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1-3, 7, 8, 10...Transcription FactorsDietBody proteinsAntioxidantenzymesThyroid hormonemetabolismSeCSeC BiosynthesisSecsynthesisRedoxsignallingmethyl transferaseSelenium binding proteinsSelenocysteyl-tRNA secSelenoproteinscoding regionnucleusINORGANIC SePhosphoseryl-tRNA[ser](sec)ORGANIC SeAUGSe = Selenium, SeMet = SelenoMethionine, SeC = Selcysteine, H2Se = Selenide, GSH = gluthatione, Trx = ThioredoxinUnkownfunctiondemethylationProtein foldingSeCGSHSe transportand storageSeryl-tRNA[ser](sec)Sec tRNA[ser]secTrXSTOPSBP2SelenateSepp1SeleniteSepw1MethylSelenol MeSeHSeliGpx1Sep15Sepx1Dio2SelMSelHUGAH2SeDio1Gpx4SeleniteSelTSephs2Sp3Selenbp1Sephs1Sephs2Nfe2l2SelVTxnrd2SBP2Gpx3TXNRD3Fabp1SelkSelenophosphateSp1Pouf2f1SeMetGpx6SEPN1Rpl30RelaJunTXNRD3CremSeCSclySecp43PstkDio3Cystathionine g-lyaseSBP2SarsFosSeMetTxnrd1SelenateSelsSars2SeCTxnrd2EefsecEefsecNfkb1Txnrd1SeloSlaGpx25, 6, 94, 9


Description

* Comments belonging to specific genes on the Selenoprotein pathway
    • TRXND3 gene: Although the geneID is correct, the sequence of this gene was guessed by analogy.
    • Cystathionine gamma-lyase is the mammalian form of bacterial methionine gamma-lyase
    • A selenoprotein database exists at: http://www.selenodb.org.

Comments

HomologyConvert 
This pathway was inferred from Homo sapiens pathway WP28(r30051) with a 58% conversion rate.

Quality Tags

Ontology Terms

 

Bibliography

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  1. Wang H, Zhang J, Yu H; ''Elemental selenium at nano size possesses lower toxicity without compromising the fundamental effect on selenoenzymes: comparison with selenomethionine in mice.''; Free Radic Biol Med, 2007 PubMed Europe PMC
  2. Ip C, Hayes C; ''Tissue selenium levels in selenium-supplemented rats and their relevance in mammary cancer protection.''; Carcinogenesis, 1989 PubMed Europe PMC
  3. Xu XM, Carlson BA, Mix H, Zhang Y, Saira K, Glass RS, Berry MJ, Gladyshev VN, Hatfield DL; ''Biosynthesis of selenocysteine on its tRNA in eukaryotes.''; PLoS Biol, 2007 PubMed Europe PMC
  4. PubMed Europe PMC
  5. Xia Y, Hill KE, Byrne DW, Xu J, Burk RF; ''Effectiveness of selenium supplements in a low-selenium area of China.''; Am J Clin Nutr, 2005 PubMed Europe PMC
  6. Gromer S, Eubel JK, Lee BL, Jacob J; ''Human selenoproteins at a glance.''; Cell Mol Life Sci, 2005 PubMed Europe PMC
  7. Small-Howard AL, Berry MJ; ''Unique features of selenocysteine incorporation function within the context of general eukaryotic translational processes.''; Biochem Soc Trans, 2005 PubMed Europe PMC
  8. Soda K, Oikawa T, Esaki N; ''Vitamin B6 enzymes participating in selenium amino acid metabolism.''; Biofactors, 1999 PubMed Europe PMC
  9. Papp LV, Lu J, Holmgren A, Khanna KK; ''From selenium to selenoproteins: synthesis, identity, and their role in human health.''; Antioxid Redox Signal, 2007 PubMed Europe PMC
  10. Boosalis MG; ''The role of selenium in chronic disease.''; Nutr Clin Pract, 2008 PubMed Europe PMC
  11. PubMed Europe PMC

History

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CompareRevisionActionTimeUserComment
106954view13:41, 17 September 2019MaintBotHMDB identifier normalization
71766view20:30, 17 October 2013MaintBotAutomated update of data sources
71291view16:56, 17 October 2013MaintBotAutomated update of data sources
69327view18:49, 8 July 2013MaintBotUpdated to 2013 gpml schema
67633view11:36, 26 June 2013DdiglesOntology Term : 'selenoamino acid metabolic pathway' added !
62842view05:03, 3 May 2013MaintBotUpdated UniProt data source
58918view04:52, 21 February 2013MaintBotUpdated Ensembl and UniProt data source
41638view02:33, 2 March 2011MaintBotRemoved redundant pathway information and comments
34041view18:59, 9 December 2009MaintBotAutomatic update of empty xrefs
32307view13:19, 15 August 2009MaintBotFixed text labels
31894view12:44, 14 August 2009MaintBotFixed group labels
31335view20:23, 13 August 2009MaintBotFixed text labels
30974view00:51, 30 July 2009MaintBotNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
CremGeneProduct25620 (Entrez Gene)
Cystathionine g-lyaseGeneProduct
Dio1GeneProduct25430 (Entrez Gene)
Dio2GeneProduct65162 (Entrez Gene)
Dio3GeneProduct29475 (Entrez Gene)
EefsecGeneProduct500255 (Entrez Gene)
Fabp1GeneProduct24360 (Entrez Gene)
FosGeneProductENSRNOG00000008015 (Ensembl)
Gpx1GeneProduct24404 (Entrez Gene)
Gpx2GeneProduct29326 (Entrez Gene)
Gpx3GeneProduct64317 (Entrez Gene)
Gpx4GeneProduct29328 (Entrez Gene)
Gpx6GeneProduct259233 (Entrez Gene)
H2SeMetabolite
JunGeneProductENSRNOG00000026293 (Ensembl)
MethylSelenol MeSeHMetabolite
Nfe2l2GeneProduct83619 (Entrez Gene)
Nfkb1GeneProduct81736 (Entrez Gene)
Pouf2f1GeneProduct
PstkGeneProduct
RelaGeneProduct309165 (Entrez Gene)
Rpl30GeneProduct64640 (Entrez Gene)
SBP2GeneProduct
SEPN1GeneProduct362624 (Entrez Gene)
Sars2GeneProduct292759 (Entrez Gene)
SarsGeneProduct266975 (Entrez Gene)
SclyGeneProduct363285 (Entrez Gene)
SeCMetaboliteHMDB03288 (HMDB)
SeMetMetaboliteHMDB03966 (HMDB)
Secp43GeneProduct65241 (Entrez Gene)
SelHGeneProduct
SelMGeneProduct498398 (Entrez Gene)
SelTGeneProduct365802 (Entrez Gene)
SelVGeneProduct499113 (Entrez Gene)
SelenateMetabolite
Selenbp1GeneProduct140927 (Entrez Gene)
SeleniteMetabolite
SelenophosphateMetaboliteHMDB06407 (HMDB)
SeliGeneProduct362713 (Entrez Gene)
SelkGeneProduct290549 (Entrez Gene)
SeloGeneProduct315216 (Entrez Gene)
SelsGeneProduct286900 (Entrez Gene)
Sep15GeneProduct113922 (Entrez Gene)
Sephs1GeneProduct291314 (Entrez Gene)
Sephs2GeneProduct308993 (Entrez Gene)
Sepp1GeneProduct29360 (Entrez Gene)
Sepw1GeneProduct25545 (Entrez Gene)
Sepx1GeneProduct685059 (Entrez Gene)
SlaGeneProduct338477 (Entrez Gene)
Sp1GeneProduct24790 (Entrez Gene)
Sp3GeneProduct367846 (Entrez Gene)
TXNRD3GeneProduct297437 (Entrez Gene)
Txnrd1GeneProduct58819 (Entrez Gene)
Txnrd2GeneProduct50551 (Entrez Gene)
UGAGeneProduct

Annotated Interactions

No annotated interactions
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