Osteoclast Signaling (Homo sapiens)

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(HMDB identifier normalization)
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<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Osteoclast Signaling" Last-Modified="2/21/2013" Organism="Homo sapiens" License="CC BY 2.0"><Comment Source="WikiPathways-description">This pathway is part the [https://assays.cancer.gov/available_assays?wp_id=WP12 CPTAC Assay Portal].</Comment>
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<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Osteoclast Signaling" Last-Modified="2/21/2013" Organism="Homo sapiens" License="CC BY 2.0">
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  <Comment Source="WikiPathways-description">This pathway is part the [https://assays.cancer.gov/available_assays?wp_id=WP12 CPTAC Assay Portal].</Comment>
   <Comment Source="WikiPathways-category">Cellular Process</Comment>
   <Comment Source="WikiPathways-category">Cellular Process</Comment>
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   <Interaction GraphId="idff22054c">
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   <Interaction GraphId="idffa65a8b">
   <Interaction GraphId="idffa65a8b">
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     <Graphics ZOrder="12288" LineThickness="1.0">
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       <Point X="665.0" Y="251.0" GraphRef="d062f" RelX="0.0" RelY="-1.0" ArrowHead="Arrow" />
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   </Interaction>
   <Interaction GraphId="f49c2">
   <Interaction GraphId="f49c2">
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     <Graphics ZOrder="32769" LineThickness="1.0">
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       <Point X="691.0" Y="232.0" GraphRef="f00" RelX="0.0" RelY="1.0" />
-
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+
       <Point X="750.0" Y="267.0" GraphRef="ee596" RelX="0.0" RelY="-1.0" ArrowHead="Arrow" />
     </Graphics>
     </Graphics>
-
     <Xref Database="" ID=""/>
+
     <Xref Database="" ID="" />
   </Interaction>
   </Interaction>
   <GraphicalLine GraphId="daded">
   <GraphicalLine GraphId="daded">
     <Graphics ZOrder="12288" LineThickness="3.0" Color="999999">
     <Graphics ZOrder="12288" LineThickness="3.0" Color="999999">
-
       <Point X="34.0" Y="318.0"/>
+
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-
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+
       <Point X="843.0" Y="318.0" />
     </Graphics>
     </Graphics>
   </GraphicalLine>
   </GraphicalLine>
   <Label TextLabel="PDGF-BB complex" GraphId="b7e">
   <Label TextLabel="PDGF-BB complex" GraphId="b7e">
-
     <Graphics CenterX="605.5" CenterY="59.0" Width="101.0" Height="20.0" ZOrder="28672" FillColor="ffffff" FontSize="10" Valign="Middle"/>
+
     <Graphics CenterX="605.5" CenterY="59.0" Width="101.0" Height="20.0" ZOrder="28672" FillColor="ffffff" FontSize="10" Valign="Middle" />
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   </Label>
   <Label TextLabel="Osteoclast activation" GraphId="bdf">
   <Label TextLabel="Osteoclast activation" GraphId="bdf">
-
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+
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   <Label TextLabel="Osteoclast" GraphId="c7c">
   <Label TextLabel="Osteoclast" GraphId="c7c">
-
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+
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   </Label>
   </Label>
   <Label TextLabel="Bone" GraphId="f53">
   <Label TextLabel="Bone" GraphId="f53">
-
     <Graphics CenterX="436.0" CenterY="330.03333333333336" Width="48.0" Height="19.933333333333334" ZOrder="28672" FillColor="ffffff" FontWeight="Bold" FontSize="14" Valign="Middle" Color="999999"/>
+
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   </Label>
   </Label>
   <Shape GraphId="f0652">
   <Shape GraphId="f0652">
-
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+
     <Graphics CenterX="437.5" CenterY="318.0" Width="733.0" Height="402.0" ZOrder="16384" FontSize="10" Valign="Middle" ShapeType="Arc" LineThickness="3.0" Color="999999" Rotation="3.141592653589793" />
   </Shape>
   </Shape>
-
   <Group GroupId="ebf27" GraphId="ae22d" Style="Complex"/>
+
   <Group GroupId="ebf27" GraphId="ae22d" Style="Complex" />
-
   <InfoBox CenterX="0.0" CenterY="0.0"/>
+
   <InfoBox CenterX="0.0" CenterY="0.0" />
   <Biopax>
   <Biopax>
-
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 
-
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">signaling pathway pertinent to development</bp:TERM>
 
-
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000650</bp:ID>
 
-
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
 
-
    </bp:openControlledVocabulary>
 
-
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 
-
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">osteoclast</bp:TERM>
 
-
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL:0000092</bp:ID>
 
-
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Cell Type</bp:Ontology>
 
-
    </bp:openControlledVocabulary>
 
     <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
     <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
       <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">signaling pathway</bp:TERM>
       <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">signaling pathway</bp:TERM>
Line 260: Line 251:
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Lacey DL</bp:AUTHORS>
       <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Lacey DL</bp:AUTHORS>
     </bp:PublicationXref>
     </bp:PublicationXref>
 +
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 +
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">signaling pathway pertinent to development</bp:TERM>
 +
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000650</bp:ID>
 +
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
 +
    </bp:openControlledVocabulary>
 +
    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
 +
      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">osteoclast</bp:TERM>
 +
      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL:0000092</bp:ID>
 +
      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Cell Type</bp:Ontology>
 +
    </bp:openControlledVocabulary>
   </Biopax>
   </Biopax>
</Pathway>
</Pathway>

Revision as of 12:11, 16 August 2019

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
106572view21:19, 6 September 2019KhanspersModified description
106216view12:11, 16 August 2019MaintBotHMDB identifier normalization
105767view19:37, 15 August 2019KhanspersModified description
97823view15:29, 9 June 2018EgonwUndo revision 97754 by [[Special:Contributions/Jessev1993|Jessev1993]] ([[User talk:Jessev1993|Talk]]) Text cannot be copied from other websites.
97754view13:18, 7 June 2018Jessev1993Modified description
97753view13:17, 7 June 2018Jessev1993added references
88602view20:04, 11 August 2016Mkutmonfix unconnected lines
81176view13:30, 31 July 2015EgonwPubChem-compound ID for H+ (hydron) instead of the hydrogen radical.
78593view14:51, 7 January 2015MaintBotadded missing graphIds
72135view08:17, 25 October 2013EgonwAdded an identifier for Pi.
68910view17:30, 8 July 2013MaintBotUpdated to 2013 gpml schema
67557view11:25, 26 June 2013DdiglesOntology Term : 'signaling pathway pertinent to development' added !
59108view22:20, 21 February 2013MaintBotUpdated Ensembl and UniProt data source
48235view05:51, 17 May 2012MaintBotUpdating PubChem xrefs
48213view05:28, 17 May 2012MaintBotAutomatic update of PubChem xrefs
45320view20:10, 7 October 2011KhanspersOntology Term : 'signaling pathway' added !
45318view20:08, 7 October 2011KhanspersOntology Term : 'osteoclast' added !
43865view23:57, 9 August 2011Samuel SklarSpecify description
43864view23:56, 9 August 2011Samuel SklarPeriodical save, work in progress
41056view23:17, 1 March 2011MaintBotRemoved redundant pathway information and comments
39760view07:33, 17 January 2011AlexanderPicomore specific title
38787view00:25, 24 September 2010AlexanderPico
38786view00:24, 24 September 2010AlexanderPico
38785view00:22, 24 September 2010AlexanderPico
38784view00:21, 24 September 2010AlexanderPicoSpecify description
38783view00:20, 24 September 2010AlexanderPico
38781view00:18, 24 September 2010AlexanderPicoSpecify description
38780view00:15, 24 September 2010AlexanderPicobeautification
20697view11:29, 14 November 2008MaintBot[[Pathway:Homo sapiens:Osteoclasts]] moved to [[Pathway:WP12]]: Moved to stable identifier
14749view22:51, 23 May 2008EhsiaoConnected
10392view02:54, 25 January 2008AlexanderPicoadded id for na+/h+ transporter
10391view02:46, 25 January 2008AlexanderPicoupdated identifiers and data types
10390view02:41, 25 January 2008AlexanderPicoupdating identifiers and data types
10358view03:01, 23 January 2008AlexanderPicoModified categories
10335view01:33, 23 January 2008EhsiaoGPML Import (Author=Grant Yang)

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/7/76/WP12_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/7/76/WP12_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 106216)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
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