Electron Transport Chain (OXPHOS system in mitochondria) (Homo sapiens)

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(Modified description)
Current revision (12:09, 16 August 2019) (view source)
(HMDB identifier normalization)
 
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<?xml version="1.0" encoding="UTF-8"?>
<?xml version="1.0" encoding="UTF-8"?>
<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Electron Transport Chain (OXPHOS system in mitochondria)" Organism="Homo sapiens">
<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Electron Transport Chain (OXPHOS system in mitochondria)" Organism="Homo sapiens">
-
   <Comment Source="GenMAPP notes"/>
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   <Comment Source="GenMAPP notes"></Comment>
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   <Comment Source="GenMAPP remarks"/>
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   <Comment Source="GenMAPP remarks"></Comment>
   <Comment Source="WikiPathways-category">Metabolic Process</Comment>
   <Comment Source="WikiPathways-category">Metabolic Process</Comment>
   <Comment Source="WikiPathways-description">An electron transport chain(ETC) couples a chemical reaction between an electron donor (such as NADH) and an electron acceptor (such as O2) to the transfer of H+ ions across a membrane, through a set of mediating biochemical reactions. These H+ ions are used to produce adenosine triphosphate (ATP), the main energy intermediate in living organisms, as they move back across the membrane.  
   <Comment Source="WikiPathways-description">An electron transport chain(ETC) couples a chemical reaction between an electron donor (such as NADH) and an electron acceptor (such as O2) to the transfer of H+ ions across a membrane, through a set of mediating biochemical reactions. These H+ ions are used to produce adenosine triphosphate (ATP), the main energy intermediate in living organisms, as they move back across the membrane.  
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This pathway is part the [https://assays.cancer.gov/available_assays?wp_id=WP111 CPTAC Assay Portal].</Comment>
This pathway is part the [https://assays.cancer.gov/available_assays?wp_id=WP111 CPTAC Assay Portal].</Comment>
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   <DataNode TextLabel="SDHB" GraphId="b62" Type="GeneProduct" GroupRef="d7381">
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   <Label TextLabel="Complex III" GraphId="cf7">
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   <Label TextLabel="binds ATP Synthase beta" GraphId="f1c">
   <Label TextLabel="binds ATP Synthase beta" GraphId="f1c">
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   <Biopax>
   <Biopax>
     <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
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Current revision

Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
106195view12:09, 16 August 2019MaintBotHMDB identifier normalization
105579view06:33, 9 August 2019KhanspersModified description
98163view11:12, 31 July 2018DeSlAdded linkout to assemly PW for Complex 1
98127view15:15, 24 July 2018DeSlRemoved licence number and last modified part.
98126view15:14, 24 July 2018DeSlchanged title slightly
97390view04:58, 14 May 2018Khanspersconnected interaction
97113view22:54, 29 April 2018AlexanderPicoReverted to version '07:58, 16 November 2017' by AlexanderPico
97110view22:20, 29 April 2018WpblockedModified title
95118view14:58, 16 November 2017DeSlFixed nested groups.
89727view09:08, 29 September 2016EgonwReconnected a line and converted to interactions into graphical lines.
86860view07:29, 14 July 2016MkutmonOntology Term : 'electron transport chain pathway' added !
86853view00:43, 14 July 2016AlexanderPicoOntology Term : 'PW:0000034' removed !
86852view00:43, 14 July 2016AlexanderPicoOntology Term : 'PW:0000034' removed !
82216view19:38, 15 September 2015AlexanderPicoFixed Cytochrome C interaction
79220view13:38, 15 March 2015EgonwReplaced the HMDB H2 identifier with H+ from ChEBI.
71266view21:52, 16 October 2013MaintBotAutomated update of data sources
67189view10:18, 26 June 2013Christine ChichesterOntology Term : 'electron transport chain pathway' added !
63179view20:33, 8 May 2013MaintBotUpdating gpml version
62687view21:19, 1 May 2013MaintBotUpdated UniProt data source
45239view18:18, 7 October 2011AlexanderPicoOntology Term : 'oxidative phosphorylation pathway' added !
41171view23:42, 1 March 2011MaintBotRemoved redundant pathway information and comments
38660view13:52, 23 September 2010FerryJagersLinked TCA Cycle
37857view19:09, 12 July 2010Khansperschanged arrow
37856view19:06, 12 July 2010Khanspersminor layout change
35237view19:41, 11 February 2010AlexanderPicoModified description
34806view00:05, 21 January 2010KhanspersModified description
34445view18:20, 10 December 2009MaintBotAutomatic update of empty xrefs
32230view12:49, 15 August 2009MaintBotFixed text labels
31735view11:58, 14 August 2009MaintBotFixed group labels
20917view11:30, 14 November 2008MaintBot[[Pathway:Homo sapiens:Electron Transport Chain]] moved to [[Pathway:WP111]]: Moved to stable identifier
14979view19:48, 24 May 2008AlexanderPicominor fixes
14823view07:24, 24 May 2008AlexanderPicoConnected!
14820view07:17, 24 May 2008AlexanderPicoPeriodical save, work in progress
14818view07:07, 24 May 2008AlexanderPicoPeriodical save, work in progress
14814view06:56, 24 May 2008AlexanderPicoPeriodical save, work in progress
14811view06:46, 24 May 2008AlexanderPicoPeriodical save, work in progress
14809view06:36, 24 May 2008AlexanderPicoPeriodical save, work in progress
14807view06:25, 24 May 2008AlexanderPicoPeriodical save, work in progress
14805view06:15, 24 May 2008AlexanderPicoPeriodical save, work in progress
14802view06:05, 24 May 2008AlexanderPicoPeriodical save, work in progress
14800view05:54, 24 May 2008AlexanderPicoPeriodical save, work in progress
14797view05:44, 24 May 2008AlexanderPicoPeriodical save, work in progress
14795view05:34, 24 May 2008AlexanderPicoPeriodical save, work in progress
14793view05:26, 24 May 2008AlexanderPicoLabels fixed
14790view05:24, 24 May 2008AlexanderPicoPeriodical save, work in progress
14788view05:19, 24 May 2008AlexanderPicoGrouped
13061view11:12, 17 May 2008MaintBotautomated metabolite conversion
8008view13:46, 7 January 2008MaintBot[[Pathway:Human:Electron Transport Chain]] moved to [[Pathway:Homo sapiens:Electron Transport Chain]]: Renaming species
7627view16:05, 18 December 2007MaintBotfixed category names
7340view12:42, 4 November 2007MaintBotAdded categories to GPML

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/c/c9/WP111_prev.svg:
<BR>Status:1
<BR>Message:Exception in thread "main" java.lang.NullPointerException
	at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
	at org.pathvisio.core.Engine.importPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/c/c9/WP111_prev.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 106195)
#7 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<?xml version="...', Object(Title), true, true)
#8 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<?xml version="...', Object(Title), true)
#9 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<?xml version="...')
#10 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
#11 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
#12 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#13 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#14 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#15 {main}
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