Endochondral Ossification (Gallus gallus)

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1, 2MineralisationChondrocyte deathHypertrophyRemoval of cartilage matrixCartilageDying?GsBoneOsteoblasticdifferentiationWNT signalingcanonical / non-canonicalProliferationCathepsinsand CalpainsChondrocyte proliferationRemoval of extracellular matrixand invasion by bone cellsChondrocyte (pre)hypertrophyBMPsVascular invastionFull differentiationintegrinsMGPCHST11HDAC4OxygenFGF18SLC38A2FRZBGHRAKT1FGFR3CTSL2IGF1HMGCS1COL2A1ADAMTS4BMP7ADAMTS1Thyroid hormoneBMPR1AGLI3RCJMB04_17i9TNAPcAMPRUNX2ALPLSOX6TIMP3DDR2IGF1RRUNX3STAT5BTHRAFGF2BMP6TGFB1FGFR1Thyroid hormoneMMP9PTCH1CALM1CDKN1CPLATSOX5MMP13ACANKIF3AADAMTS5PTH1RCarminerinPKATGFB2SERPINH1RUNX2PTHLHBapx1SOX9COL10A1TGFBIIGF2MEF2CTHRASCINIHHPLAUIFT88RUNX2VEGFATriiodothyronineENPP1OsteopontinCAB39PTCH1PTHGrowth hormone


Description

No description

Comments

HomologyConvert 
This pathway was inferred from Homo sapiens pathway WP474(r29737) with a 78% conversion rate.

Quality Tags

Ontology Terms

 

Bibliography

  1. Belluoccio D, Bernardo BC, Rowley L, Bateman JF; ''A microarray approach for comparative expression profiling of the discrete maturation zones of mouse growth plate cartilage.''; Biochim Biophys Acta, 2008 PubMed
  2. Mackie EJ, Ahmed YA, Tatarczuch L, Chen KS, Mirams M; ''Endochondral ossification: how cartilage is converted into bone in the developing skeleton.''; Int J Biochem Cell Biol, 2008 PubMed

History

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CompareRevisionActionTimeUserComment
87978view13:18, 25 July 2016SusanOntology Term : 'regulatory pathway' added !
72218view12:56, 27 October 2013EgonwFixed the ChEBI database name.
72178view22:20, 25 October 2013AlexanderPicoAdded missing metabolite identifiers.
68824view17:17, 8 July 2013MaintBotUpdated to 2013 gpml schema
40960view22:53, 1 March 2011MaintBotRemoved redundant pathway information and comments
33887view17:55, 9 December 2009MaintBotAutomatic update of empty xrefs
33498view15:12, 30 November 2009MaintBotRemoved group label
31545view21:50, 13 August 2009MaintBotFixed text labels
30397view21:08, 29 July 2009MaintBotNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
ACANGeneProduct395798 (Entrez Gene)
ADAMTS1GeneProduct418479 (Entrez Gene)
ADAMTS4GeneProduct
ADAMTS5GeneProduct427971 (Entrez Gene)
AKT1GeneProduct395928 (Entrez Gene)
ALPLGeneProduct396317 (Entrez Gene)
BMP6GeneProduct420868 (Entrez Gene)
BMP7GeneProduct395494 (Entrez Gene)
BMPR1AGeneProduct396308 (Entrez Gene)
Bapx1GeneProduct
CAB39GeneProduct424830 (Entrez Gene)
CALM1GeneProduct396523 (Entrez Gene)
CDKN1CGeneProduct
CHST11GeneProduct418081 (Entrez Gene)
COL10A1GeneProduct100126150 (Entrez Gene)
COL2A1GeneProduct395069 (Entrez Gene)
CTSL2GeneProduct427466 (Entrez Gene) Taken as homologue to mouse Cathepsin L (Ctsl)
CarminerinGeneProduct
  • Taken as human homologue of mouse Cst10
  • PMID: 13679380
DDR2GeneProduct396404 (Entrez Gene)
ENPP1GeneProduct426929 (Entrez Gene)
FGF18GeneProduct395453 (Entrez Gene)
FGF2GeneProduct396413 (Entrez Gene)
FGFR1GeneProduct396516 (Entrez Gene)
FGFR3GeneProduct396515 (Entrez Gene)
FRZBGeneProduct395545 (Entrez Gene)
GHRGeneProduct408184 (Entrez Gene)
GLI3GeneProduct420769 (Entrez Gene)
Growth hormoneGeneProduct
HDAC4GeneProduct374207 (Entrez Gene)
HMGCS1GeneProduct396379 (Entrez Gene)
IFT88GeneProduct418952 (Entrez Gene)
IGF1GeneProduct418090 (Entrez Gene)
IGF1RGeneProduct395889 (Entrez Gene)
IGF2GeneProduct395097 (Entrez Gene)
IHHGeneProduct395801 (Entrez Gene)
KIF3AGeneProduct416332 (Entrez Gene)
MEF2CGeneProduct769007 (Entrez Gene)
MGPGeneProduct395912 (Entrez Gene)
MMP13GeneProduct772008 (Entrez Gene)
MMP9GeneProduct395387 (Entrez Gene)
OsteopontinGeneProduct
OxygenMetaboliteHMDB01377 (HMDB)
PKAGeneProduct
PLATGeneProduct426791 (Entrez Gene)
PLAUGeneProduct396424 (Entrez Gene)
PTCH1GeneProduct395806 (Entrez Gene)
PTH1RGeneProduct420401 (Entrez Gene)
PTHGeneProduct396436 (Entrez Gene)
PTHLHGeneProduct396281 (Entrez Gene)
RCJMB04_17i9GeneProduct424044 (Entrez Gene)
RUNX2GeneProduct373919 (Entrez Gene)
RUNX3GeneProduct769687 (Entrez Gene)
SCINGeneProduct420588 (Entrez Gene) PMID: 17097081
SERPINH1GeneProduct396228 (Entrez Gene)
SLC38A2GeneProduct417807 (Entrez Gene)
SOX5GeneProduct418195 (Entrez Gene)
SOX6GeneProduct423068 (Entrez Gene)
SOX9GeneProduct374148 (Entrez Gene)
STAT5BGeneProduct395556 (Entrez Gene)
TGFB1GeneProduct
TGFB2GeneProduct421352 (Entrez Gene)
TGFBIGeneProduct395897 (Entrez Gene)
THRAGeneProduct396251 (Entrez Gene)
TIMP3GeneProduct396483 (Entrez Gene)
TNAPGeneProduct
Thyroid hormoneMetabolite60311 (ChEBI)
Thyroid hormoneMetaboliteT4
TriiodothyronineMetabolite24864 (ChEBI)
VEGFAGeneProduct395909 (Entrez Gene)
cAMPMetaboliteHMDB00058 (HMDB)

Annotated Interactions

No annotated interactions
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