Fatty Acid Beta Oxidation (Rattus norvegicus)

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trans,cis-Lauro-2,6-dienoyl-CoA3-Oxocanoyl-CoA3-Oxododexanoyl-CoAFatty Acid4-cis-dexeboyl-CoAOctaoyl-CoA(S)-3-Hydroxydodexanonyl-CoATrans-Tetradex-2-enoyl-CoAGlutarateTrans-Hexadecanoyl-CoADxotetradecanoyl-CoA(S)-HydrocyhexanoylSaturated fatty acidsUnsaturated fatty acidsCronoyl-CoALipasesHadhaTrans-Oct-2-enoyl-CoAMyristoyl-CoA(S)-3-Hydroxytetradecanoyl-CoAAcetyl-CoAAcetyl-CoAAcadmHadhbPnpla2Glutaryl-CoACpt2Glyceraldehyde-3-Phosphate2-trans-dodecenoyl-CoAAcadsAcadmHadhbGlycerolcis,cis-3,6-Dodecadienoyl-CoAEci1LOC100911186GcdhHadhbTrans-Dec-2-enoyl-CoAHadhbHadhHadhbHadhbHadhb3-Oxo-octanoyl-CoAAcadvlAcetyl-CoAHadhbHadhb3-Oxohexanoyl-CoAGpd22-trans-4-cis-decadienoyl-CoAButanoyl-CoAHadhaHadhHadhaAcetyl-CoAAcetyl-CoADecanoyl-CoALinoleoyl-CoA3-Oxopalmitoyl-CoAAcsl5DldHadhaAcss2HadhLOC100911515Gk2HadhbDihydroxyacetone PhosphateLOC100911186Acsl1Decr1Trans-Hex-2-enoyl-CoALipc(S)-3-Hydroxyhexadecanoyl-CoASlc25a20AcadlAcadlCrat(S)-3-Hydroxybutanoyl-CoALipeLOC100911186Lauroyl-CoAAcsl6Eci1Hexanoyl-CoAHadhL-Glycerol-3-PhosphateHadhbCpt1aTCA cycleCpt1bHadhaHadhaHadhaAcyl-CoAHadhLOC100911186HadhaHadhbAcsl4(S)-3-Hydroxydecanoyl-CoAAcadsGykl1Lipf(S)-3-Hydroxyoctanoyl-CoAHadhaAcetyl-CoAPalmitoyl-CoAAcadlHadhbHadhaHadhaAcetoacetyl-CoAChkbAcetyl-CoALOC100911186Acetyl-CoAHadhaAcat1Acsl33-trans-decenoyl-CoATriacylglycerolHadhaAcadlLplAcetyl-CoAAcadmTCA cycleTCA cycleTCA cycleTCA cycleTCA cycleTCA cycleTCA cycle


Description

Complete fatty acid beta-oxidation pathway for saturated and unsaturated fatty acids, developed and curated internally by BiGCaT Bioinformatics.

This pathway was previously split into three parts plus a meta file for statistics. If you still have these you can replace all four with this single pathway.

Proteins on this pathway have targeted assays available via the CPTAC Assay Portal

Comments

HomologyMapper 
This pathway was inferred from Homo sapiens pathway [WP143_107117.gpml] with a 100.0% conversion rate.

Quality Tags

Ontology Terms

 

Bibliography

No bibliography


History

View all...
CompareRevisionActionTimeUserComment
107609view10:56, 24 October 2019DeSlUpdated with WP143_r107117 homology mapper conversion.
97050view15:12, 26 April 2018DeSlConnected unconnected line.
96255view15:26, 2 March 2018Fehrhartfixed connections
77419view18:07, 7 September 2014EgonwAdded a ChEBI identifier.
77417view09:06, 7 September 2014EgonwConverted Labels into metabolite DataNodes but without an identifier.
77416view09:05, 7 September 2014EgonwConverted Labels into metabolite DataNodes but without an identifier.
73843view00:29, 26 February 2014MaintBotupdated schema
67231view10:24, 26 June 2013Christine ChichesterOntology Term : 'fatty acid beta degradation pathway' added !
41658view02:34, 2 March 2011MaintBotRemoved redundant pathway information and comments
34056view19:04, 9 December 2009MaintBotAutomatic update of empty xrefs
21742view11:32, 14 November 2008MaintBot[[Pathway:Rattus norvegicus:Fatty Acid Beta Oxidation 1 BiGCaT]] moved to [[Pathway:WP506]]: Moved to stable identifier
8026view13:46, 7 January 2008MaintBot[[Pathway:Rat:Fatty Acid Beta Oxidation 1 BiGCaT]] moved to [[Pathway:Rattus norvegicus:Fatty Acid Beta Oxidation 1 BiGCaT]]: Renaming species
7636view16:06, 18 December 2007MaintBotfixed category names
7345view12:42, 4 November 2007MaintBotAdded categories to GPML
19433view22:20, 22 May 2007C.Redferngpml file for [[Rat:Fatty_Acid_Beta_Oxidation_1_BiGCaT]]
19432view22:20, 22 May 2007Evelogpml file for [[Rat:Fatty_Acid_Beta_Oxidation_1_BiGCaT]]
6536view22:20, 22 May 2007Nsalomonisgpml file for [[Rat:Fatty_Acid_Beta_Oxidation_1_BiGCaT]]

External references

DataNodes

View all...
NameTypeDatabase referenceComment
(S)-3-Hydroxybutanoyl-CoAMetaboliteCHEBI:15453 (ChEBI)
(S)-3-Hydroxydecanoyl-CoAMetaboliteCHEBI:28325 (ChEBI)
(S)-3-Hydroxydodexanonyl-CoAMetabolite
(S)-3-Hydroxyhexadecanoyl-CoAMetaboliteCHEBI:27402 (ChEBI)
(S)-3-Hydroxyoctanoyl-CoAMetaboliteCHEBI:28632 (ChEBI)
(S)-3-Hydroxytetradecanoyl-CoAMetaboliteCHEBI:27466 (ChEBI)
2-trans-4-cis-decadienoyl-CoAMetaboliteCHEBI:29119 (ChEBI)
2-trans-dodecenoyl-CoAMetaboliteCHEBI:15471 (ChEBI)
3-Oxo-octanoyl-CoAMetaboliteCHEBI:28264 (ChEBI)
3-Oxocanoyl-CoAMetabolite
3-Oxododexanoyl-CoAMetabolite11966169 (PubChem-compound)
3-Oxohexanoyl-CoAMetaboliteCHEBI:27648 (ChEBI)
3-Oxopalmitoyl-CoAMetaboliteCHEBI:15491 (ChEBI)
3-trans-decenoyl-CoAMetaboliteCHEBI:29126 (ChEBI)
4-cis-dexeboyl-CoAMetabolite
AcadlGeneProductENSRNOG00000012966 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:33
AcadmGeneProductENSRNOG00000009845 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:34
AcadsGeneProductENSRNOG00000001177 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:35
AcadvlGeneProductENSRNOG00000018114 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:37
Acat1GeneProductENSRNOG00000007862 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:38
Acetoacetyl-CoAMetabolite1420-36-6 (CAS)
Acetyl-CoAMetabolite72-89-9 (CAS)
Acsl1GeneProductENSRNOG00000010633 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:2180
Acsl3GeneProductENSRNOG00000014718 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:2181
Acsl4GeneProductENSRNOG00000019180 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:2182
Acsl5GeneProductENSRNOG00000016265 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:51703
Acsl6GeneProductENSRNOG00000026745 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:23305
Acss2GeneProductENSRNOG00000018755 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:55902
Acyl-CoAMetabolite9029-97-4 (CAS)
Butanoyl-CoAMetaboliteCHEBI:15517 (ChEBI)
ChkbGeneProductENSRNOG00000011404 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1120
Cpt1aGeneProductENSRNOG00000014254 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1374
Cpt1bGeneProductENSRNOG00000010438 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1375
Cpt2GeneProductENSRNOG00000012443 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1376
CratGeneProductENSRNOG00000018145 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1384
Decanoyl-CoAMetaboliteCHEBI:28493 (ChEBI)
Decr1GeneProductENSRNOG00000008236 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1666
Dihydroxyacetone PhosphateMetabolite57-04-5 (CAS)
DldGeneProductENSRNOG00000006364 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1738
Dxotetradecanoyl-CoAMetabolite
Eci1GeneProductENSRNOG00000008843 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1632
Fatty AcidMetaboliteCHEBI:35366 (ChEBI)
GcdhGeneProductENSRNOG00000003307 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:2639
Gk2GeneProductENSRNOG00000029397 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:2712
GlutarateMetabolite743 (PubChem-compound)
Glutaryl-CoAMetaboliteCHEBI:15524 (ChEBI)
Glyceraldehyde-3-PhosphateMetabolite591-57-1 (CAS)
GlycerolMetabolite56-81-5 (CAS)
Gpd2GeneProductENSRNOG00000033824 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:2820
Gykl1GeneProductENSRNOG00000029096 (Ensembl)
  • Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:2710
HadhGeneProductENSRNOG00000010697 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:3033
HadhaGeneProductENSRNOG00000024629 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:3030
HadhbGeneProductENSRNOG00000010800 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:3032
Hexanoyl-CoAMetaboliteCHEBI:27540 (ChEBI)
L-Glycerol-3-PhosphateMetaboliteCHEBI:15978 (ChEBI)
LOC100911186GeneProductENSRNOG00000047565 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:1892
LOC100911515GeneProductENSRNOG00000050669 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:7167
Lauroyl-CoAMetabolite6244-92-4 (CAS)
Linoleoyl-CoAMetabolite40757-80-0 (CAS)
LipcGeneProductENSRNOG00000060338 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:3990
LipeGeneProductENSRNOG00000020546 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:3991
LipfGeneProductENSRNOG00000019448 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:8513
LplGeneProductENSRNOG00000012181 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:4023
Myristoyl-CoAMetaboliteCHEBI:15532 (ChEBI)
Octaoyl-CoAMetabolite
Palmitoyl-CoAMetaboliteCHEBI:15525 (ChEBI)
Pnpla2GeneProductENSRNOG00000018736 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:57104
Slc25a20GeneProductENSRNOG00000020288 (Ensembl) Homology Mapping from Homo sapiens to Rattus norvegicus: Original ID = L:788
TCA cyclePathwayWP78 (WikiPathways)
Trans-Dec-2-enoyl-CoAMetaboliteCHEBI:10723 (ChEBI)
Trans-Hex-2-enoyl-CoAMetaboliteCHEBI:28706 (ChEBI)
Trans-Hexadecanoyl-CoAMetabolite
Trans-Oct-2-enoyl-CoAMetaboliteCHEBI:27537 (ChEBI)
Trans-Tetradex-2-enoyl-CoAMetabolite
TriacylglycerolMetaboliteCHEBI:17855 (ChEBI)
cis,cis-3,6-Dodecadienoyl-CoAMetaboliteCHEBI:28002 (ChEBI)
trans,cis-Lauro-2,6-dienoyl-CoAMetaboliteCHEBI:28387 (ChEBI)

Annotated Interactions

No annotated interactions
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