TCA Cycle (Saccharomyces cerevisiae)

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1TransportMitochondrionCytoplasmMDH3MDH2IsocitrateFumarateCIT3PDB1IDH1ICL1Succinyl-CoAIDP1KGD1PYC1SDH4SDH3Glycolysis and GluconeogenesisPDX1alpha-ketoglutaratePDA1LSC2MalateGlyoxylateMLS1SDH1SuccinateCIT2MDH1ACO1PYC2KGD2MAE1ACO2LPD1IDP2Acetyl-CoACIT1IDH2MalateLPD1FUM1DAL7CitrateLSC1SDH2LAT1PyruvateOxaloacetateOxaloacetatePyruvateAcetyl-CoA


Description

Based on Glycolysis and Gluconeogenesis Pathways at SGD and on Kruckeberg, AL and Dickinson, JR (2004) Carbon Metabolism in The Metabolism and Molecular Physiology of Saccharomyces cerevisiae, Dickinson, JR and Schweizer, M, eds, CRC Press.

Quality Tags

Ontology Terms

 

Bibliography

  1. J. Richard Dickinson, Michael Schweizer; ''Metabolism and Molecular Physiology of Saccharomyces Cerevisiae''; CRC Press (book); ISBN-10: 0415299004, 2004

History

View all...
CompareRevisionActionTimeUserComment
107027view13:48, 17 September 2019MaintBotHMDB identifier normalization
102523view19:28, 3 January 2019Khanspersremoved GenMAPP comments
102428view12:53, 23 December 2018DeSlRemoved "last modified" item
102427view12:52, 23 December 2018DeSlModified description
102426view12:51, 23 December 2018DeSlAdded lit. ref
102420view10:05, 23 December 2018EgonwReplaced a deleted CAS number with the active one.
87407view11:05, 22 July 2016MaintBotadded missing graphids
79804view16:25, 16 April 2015Mkutmonchanged interaction in legend to graphical line
78394view10:25, 7 January 2015MaintBotadded missing graphIds
78137view00:50, 5 December 2014AlexanderPicoFinished cleanup
78136view00:29, 5 December 2014AlexanderPicoFixing cycle and catalytic reactions
78135view00:16, 5 December 2014AlexanderPicoAdded link to pathway WP515
78134view00:11, 5 December 2014AlexanderPicoFixing metabolites, cell shapes and interactions
69885view18:34, 11 July 2013EgonwMarked a few DataNodes with CAS registry numbers as metabolites.
69620view20:34, 8 July 2013MaintBotUpdated to 2013 gpml schema
67687view11:49, 26 June 2013DdiglesOntology Term : 'citrate cycle pathway' added !
58986view19:34, 21 February 2013MaintBotUpdated Ensembl and UniProt data source
41854view04:51, 2 March 2011MaintBotRemoved redundant pathway information and comments
29899view12:03, 9 June 2009Thomas
21710view11:32, 14 November 2008MaintBot[[Pathway:Saccharomyces cerevisiae:Krebs-TCA Cycle]] moved to [[Pathway:WP490]]: Moved to stable identifier
12760view08:01, 17 May 2008MaintBotautomated metabolite conversion
10996view20:21, 2 March 2008MaintBotyeast id converter
10477view18:41, 30 January 2008KhanspersModified categories
10264view23:24, 18 January 2008AlexanderPicominor touch-ups and initial attempt to fix gene IDs
8801view14:09, 7 January 2008MaintBotAdded to category $category
8799view14:09, 7 January 2008KdahlquistUploaded new pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
ACO1GeneProductYLR304C (Ensembl)
ACO2GeneProductYJL200C (Ensembl)
Acetyl-CoAMetabolite72-89-9 (CAS)
CIT1GeneProductYNR001C (Ensembl)
CIT2GeneProductYCR005C (Ensembl)
CIT3GeneProductYPR001W (Ensembl)
CitrateMetabolite29081 (Chemspider)
DAL7GeneProductYIR031C (Ensembl)
FUM1GeneProductYPL262W (Ensembl)
FumarateMetaboliteHMDB0000134 (HMDB)
Glycolysis and GluconeogenesisPathwayWP515 (WikiPathways)
GlyoxylateMetaboliteHMDB0000119 (HMDB)
ICL1GeneProductYER065C (Ensembl)
  • peroxisome
  • Type your comment here
IDH1GeneProductYNL037C (Ensembl)
IDH2GeneProductYOR136W (Ensembl)
IDP1GeneProductYDL066W (Ensembl)
IDP2GeneProductYLR174W (Ensembl)
IsocitrateMetabolite320-77-4 (CAS)
KGD1GeneProductYIL125W (Ensembl)
KGD2GeneProductYDR148C (Ensembl)
LAT1GeneProductYNL071W (Ensembl)
LPD1GeneProductYFL018C (Ensembl)
LSC1GeneProductYOR142W (Ensembl)
LSC2GeneProductYGR244C (Ensembl)
MAE1GeneProductYKL029C (Ensembl)
MDH1GeneProductYKL085W (Ensembl)
MDH2GeneProductYOL126C (Ensembl)
MDH3GeneProductYDL078C (Ensembl)
MLS1GeneProductYNL117W (Ensembl)
  • peroxisome
  • Type your comment here
MalateMetabolite6915-15-7 (CAS)
OxaloacetateMetaboliteHMDB0000223 (HMDB)
PDA1GeneProductYER178W (Ensembl)
PDB1GeneProductYBR221C (Ensembl)
PDX1GeneProductYGR193C (Ensembl)
PYC1GeneProductYGL062W (Ensembl)
PYC2GeneProductYBR218C (Ensembl)
PyruvateMetaboliteHMDB0000243 (HMDB)
SDH1GeneProductYKL148C (Ensembl)
SDH2GeneProductYLL041C (Ensembl)
SDH3GeneProductYKL141W (Ensembl)
SDH4GeneProductYDR178W (Ensembl)
SuccinateMetaboliteHMDB0000254 (HMDB)
Succinyl-CoAMetabolite604-98-8 (CAS)
alpha-ketoglutarateMetaboliteHMDB0000208 (HMDB)

Annotated Interactions

No annotated interactions

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