Sandbox Pathway Test (Homo sapiens)

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536NucleusCalciumBRCA1MMPéTP53AKAP2TCA CycleADPSubstrate éMIR338D-GlucoseMitochondria21, 4PBRCA1Alpha-D-GlucoseATP


Description

This is just one test pathway with a variety of object types including datanodes which can be annotated with database entries. Feel free to edit anything on this page.

Quality Tags

Ontology Terms

 

Bibliography

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  1. Talépéoo; ''Test''; Test, 2018
  2. Kelder T, Conklin BR, Evelo CT, Pico AR; ''Finding the right questions: exploratory pathway analysis to enhance biological discovery in large datasets.''; PLoS Biol, 2010 PubMed Europe PMC
  3. Kelder T, Pico AR, Hanspers K, van Iersel MP, Evelo C, Conklin BR; ''Mining biological pathways using WikiPathways web services.''; PLoS One, 2009 PubMed Europe PMC
  4. MMP2è; ''Test''; Test, 2018
  5. Pico AR, Kelder T, van Iersel MP, Hanspers K, Conklin BR, Evelo C; ''WikiPathways: pathway editing for the people.''; PLoS Biol, 2008 PubMed Europe PMC
  6. Kelder T, van Iersel MP, Hanspers K, Kutmon M, Conklin BR, Evelo CT, Pico AR; ''WikiPathways: building research communities on biological pathways.''; Nucleic Acids Res, 2012 PubMed Europe PMC

History

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CompareRevisionActionTimeUserComment
107922view18:50, 11 November 2019KhanspersModified title
107397view18:50, 4 October 2019Khansperstesting
107346view19:25, 26 September 2019Khansperstest
107325view17:44, 23 September 2019AlexanderPicocleaning sandbox
106342view09:06, 21 August 2019DeSlAnnotated lit ref with "query pubmed" function.
106341view09:04, 21 August 2019DeSlTrying to create empty references (again)
106340view09:00, 21 August 2019DeSlRemoved nodes with same lit. ref.
106339view08:59, 21 August 2019DeSlAdded same lit. ref.
106338view08:58, 21 August 2019DeSlTrying to recreate empty publication being added to website (and GPML).
105284view17:46, 26 July 2019Khanspersminor update
104916view20:17, 24 June 2019Ariuttamake a simple example
104915view20:16, 24 June 2019Ariuttamake a complex
103992view15:18, 24 April 2019DeSlAdded reverse reaction template
103991view13:37, 24 April 2019DeSlWant to see diff between modification, conversion and binding MIM.
103990view13:34, 24 April 2019DeSlAdded phosphorylation template
103947view13:27, 17 April 2019DeSlRemoved licence + last modified info
103946view13:26, 17 April 2019DeSlTesting mim-translocation
103942view21:55, 16 April 2019AlexanderPicotest edit
102378view13:52, 21 December 2018Mkutmontest
102377view13:51, 21 December 2018Mkutmontest
102369view11:51, 21 December 2018Mkutmontest
102368view11:49, 21 December 2018Mkutmontest
102367view11:47, 21 December 2018Mkutmontest
102366view11:46, 21 December 2018Mkutmontest
102365view11:45, 21 December 2018Mkutmontest characters
102364view11:44, 21 December 2018Mkutmontest
101724view21:21, 1 November 2018Khansperstest
98040view09:16, 6 July 2018MkutmonTest
97140view22:34, 30 April 2018Khansperstest
96903view18:45, 18 April 2018AlexanderPicoReverted to version '12:07, 13 March 2018' by AlexanderPico
96833view03:05, 11 April 2018Artoria2e5Modified description
96829view00:52, 11 April 2018Artoria2e5Modified description
96828view00:48, 11 April 2018Artoria2e5Modified description
96827view00:47, 11 April 2018Artoria2e5Modified description
96826view00:44, 11 April 2018Artoria2e5Modified description
96427view19:07, 13 March 2018AlexanderPicofixed xrefs
96426view19:06, 13 March 2018AlexanderPicoReverted to version '14:59, 24 April 2017' by AlexanderPico
96425view19:05, 13 March 2018AlexanderPicoReverted to version '17:26, 15 December 2017' by AlexanderPico
96243view06:58, 2 March 2018KhanspersModified description
96242view06:58, 2 March 2018KhanspersReverted to version '06:58, 2 March 2018' by Khanspers
96241view06:58, 2 March 2018KhanspersModified description
96240view06:58, 2 March 2018KhanspersModified description
96239view06:58, 2 March 2018KhanspersModified description
96108view18:30, 16 February 2018KhanspersModified description
96107view18:29, 16 February 2018KhanspersModified description
96106view18:29, 16 February 2018KhanspersModified description
95809view03:24, 20 January 2018AlexanderPicotest edit
95652view18:56, 15 January 2018AriuttaReverted to version '00:26, 16 December 2017' by Ariutta
95634view19:30, 11 January 2018AriuttaCenter metabolite inside nucleus
95627view02:49, 11 January 2018Ariuttabigger cell

External references

DataNodes

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NameTypeDatabase referenceComment
ADPMetaboliteHMDB01508 (HMDB)
AKAP2GeneProduct11217 (Entrez Gene)
ATPMetabolite
Alpha-D-GlucoseProtein
BRCA1GeneProductENSG00000012048 (Ensembl)
CalciumMetaboliteHMDB00464 (HMDB) At least xx needed.
D-GlucoseMetabolite
MIR338RnaENSG00000211563 (Ensembl)
MMPéGeneProductENSG00000087245 (Ensembl)
Substrate éMetaboliteundefined (Ensembl Plants)
TCA CyclePathwayWP78 (WikiPathways)
TP53GeneProductENSG00000141510 (Ensembl)

Annotated Interactions

SourceTargetTypeDatabase referenceComment
BRCA1mim-conversion10003 (Rhea)
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