ATM signaling in development and disease (Homo sapiens)

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1LegendV(D)JPPP activationDNA Damage ATM substrateHypotonic Stress Oxidative StressAutophagyCSRTIP60PP5MRE11BCHK2MRE11AWIP1RIF1ATF2Cdc25ArtemisRNF8CDKG6PDKAP1MDC1Reactive Oxygen Species HMGN1CTIPAMPK53BP1Nbs1RNF168mTORC1PPP2R4HMGN1NF-KBHSP27Bub1ATMINNEMOuH2BTSC2RNF20CDK5Cell CycleuH2AXLFLKB1H2AXATMp38SMC1Aurora BDNAPKcsHDAC4ATRLamin-BCHK1ATMRNF40PPP2R4p38MAPKRad50CEP63ATMATMATMMRE11ARad50Nbs1ATMNbs1MRE11ARad50ATMATMchromatin relaxationImmunityDNA repairNeuronal survivaltranscriptionalsilencingchromatin retentioncheckpointactivationG1/Sintra-SG2/MSACMRE11BMRE11Bcell cycle checkpointcellular process or ATM function


Description

This pathway is modeled after Figure 4 in the article "The ATM signaling network in development and disease" (See Bibliography). When DNA is damaged, DDR begins to work on recuperating the damage through the appropriate cellular programs such as transcription, translation, etc etc. The ataxia-telangiectasia mutated (ATM) kinase acts as the main core of this pathway acting upon or receiving a lot of the reactions towards other gene products. ATM substrates use several different cell cycle checkpoints to determine the health of the DNA, and determine different types of disease/damage done to the DNA. The p38MAPK which is a reaction by ATM later leads to HSP27 which inhibits oxidative stress within the cell. DDR and ATM both work to help the cell recover from any damage it has received and understanding how ATM works will help increase doctors and scientists understanding of diseases, and their treatment. Proteins on this pathway have targeted assays available via the CPTAC Assay Portal

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Ontology Terms

 

Bibliography

  1. Stracker TH, Roig I, Knobel PA, Marjanović M; ''The ATM signaling network in development and disease.''; Front Genet, 2013 PubMed Europe PMC Scholia

History

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CompareRevisionActionTimeUserComment
117656view11:51, 22 May 2021EweitzModified title
106756view13:23, 17 September 2019MaintBotHMDB identifier normalization
105871view04:47, 16 August 2019KhanspersModified description
105432view04:33, 8 August 2019KhanspersModified description
89745view23:52, 29 September 2016KhanspersModified title
89623view19:41, 21 September 2016Khanspersupdated labels, some xrefs, added legend and coloring
88965view22:23, 17 August 2016AAR&CoModified description
88964view22:20, 17 August 2016AAR&CoModified description
88962view22:15, 17 August 2016AAR&CoModified description
88856view15:59, 16 August 2016AAR&CoModified description
88849view22:17, 15 August 2016AAR&CoOntology Term : 'G1 phase pathway' added !
88848view22:16, 15 August 2016AAR&CoOntology Term : 'DNA repair pathway' added !
88847view22:15, 15 August 2016AAR&CoAdded Literature Reference
88846view22:13, 15 August 2016AAR&CoNew pathway

External references

DataNodes

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NameTypeDatabase referenceComment
53BP1GeneProductENSG00000067369 (Ensembl)
AMPKGeneProductENSG00000132356 (Ensembl)
ATF2GeneProductENSG00000115966 (Ensembl)
ATMGeneProductENSG00000149311 (Ensembl)
ATMINGeneProductENSG00000166454 (Ensembl)
ATRGeneProductENSG00000175054 (Ensembl)
ArtemisGeneProductENSG00000152457 (Ensembl)
Aurora BGeneProductENSG00000178999 (Ensembl)
Bub1GeneProductENSG00000169679 (Ensembl)
CDK5GeneProductENSG00000164885 (Ensembl)
CDKGeneProductENSG00000170312 (Ensembl)
CEP63GeneProductENSG00000182923 (Ensembl)
CHK1GeneProductENSG00000149554 (Ensembl)
CHK2GeneProductENSG00000183765 (Ensembl)
CTIPGeneProductENSG00000101773 (Ensembl)
Cdc25GeneProductENSG00000058335 (Ensembl)
Cell CyclePathwayWP45 (WikiPathways)
DNAPKcsGeneProductENSG00000253729 (Ensembl)
G6PDGeneProductENSG00000160211 (Ensembl)
H2AXGeneProductENSG00000188486 (Ensembl)
HDAC4GeneProductENSG00000068024 (Ensembl)
HMGN1GeneProductENSG00000205581 (Ensembl)
HSP27GeneProductENSG00000106211 (Ensembl)
KAP1GeneProductENSG00000130726 (Ensembl)
LKB1GeneProductENSG00000118046 (Ensembl)
Lamin-BGeneProductENSG00000143815 (Ensembl)
MDC1GeneProductENSG00000137337 (Ensembl)
MRE11AGeneProductENSG00000020922 (Ensembl)
MRE11BGeneProductENSG00000242537 (Ensembl)
NEMOGeneProductENSG00000269335 (Ensembl)
NF-KBGeneProductENSG00000109320 (Ensembl)
Nbs1GeneProductENSG00000104320 (Ensembl)
PP5GeneProductENSG00000011485 (Ensembl)
PPP2R4GeneProductENSG00000119383 (Ensembl)
RIF1GeneProductENSG00000080345 (Ensembl)
RNF168GeneProductENSG00000163961 (Ensembl)
RNF20GeneProductENSG00000155827 (Ensembl)
RNF40GeneProductENSG00000103549 (Ensembl)
RNF8GeneProductENSG00000112130 (Ensembl)
Rad50GeneProductENSG00000113522 (Ensembl)
Reactive Oxygen Species MetaboliteHMDB0003125 (HMDB)
SMC1GeneProductENSG00000072501 (Ensembl)
TIP60GeneProductENSG00000172977 (Ensembl)
TSC2GeneProductENSG00000103197 (Ensembl)
WIP1GeneProductENSG00000170836 (Ensembl)
XLFGeneProductENSG00000152457 (Ensembl)
mTORC1GeneProductENSG00000198793 (Ensembl)
p38GeneProductENSG00000176749 (Ensembl)
p38MAPKGeneProductENSG00000197442 (Ensembl)
uH2AGeneProductIdentifier not Found
uH2BGeneProductIdentifier not Found

Annotated Interactions

No annotated interactions

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