Calvin cycle (Populus trichocarpa)

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1RuBisCO activasecarbonic anhydraseglyceraldehyde-3-phosphate dehydrogenasesedoheptulose-1,7-bisphosphataseribulose-5-phosphate-3-epimerasecarbonic acidfructose-1,6-bisphosphatefructose-6-phosphatetransketolasephosphoglycerate kinasexylulose-5-phosphateerythrose-4-phosphateRuBisCOcarbon dioxidephosphoribulokinasesedoheptulose-1,7-bisphosphatedihydroxy-acetone phosphatefructose-1,6-bisphosphataseRuBisCO subunit binding3-phosphoglycerateglyceraldehyde-3-phosphateribose-5-phosphatealdolaseribulose-1,5-bisphosphateribulose-5-phosphateCHOLOROPLAST1,3-bisphosphoglyceratetransketolasealdolasesedoheptulose-7-phosphateribulose-5-phosphate epimeraseADPATPNADP+NADPHADPATP


Description

This plant pathway represents the Calvin cycle (chloroplast). The primary site of CO2 fixation in C3 plants. CO2 is fixated onto ribulose-1,5-bishosphate to produce 3-phosphoglycerate. Part of the 3-phosphoglycerate is exported to the glycolysis (WP2862) while the rest is regenerated into ribulose-1,5-bisphosphate. The process uses NADPH and ATP that have been generated by the photosynthetic electon transport chain (WP2861).

Quality Tags

Ontology Terms

 

Bibliography

  1. Bohler S, Sergeant K, Lefèvre I, Jolivet Y, Hoffmann L, Renaut J, Dizengremel P, Hausman JF; ''Differential impact of chronic ozone exposure on expanding and fully expanded poplar leaves.''; Tree Physiol, 2010 PubMed

History

View all...
CompareRevisionActionTimeUserComment
102771view21:10, 23 January 2019EgonwFixed the casing of two ChEBI identifiers (prefix should be CHEBI: instead of ChEBI:)
86996view14:39, 15 July 2016MkutmonOntology Term : 'photosynthesis pathway' added !
78143view13:17, 5 December 2014AnweshaFixed metabolite annotation
78141view12:58, 5 December 2014AnweshaAnnotated enzymes
78140view12:54, 5 December 2014AnweshaFixed Mmetabolite labels, annotations, and protein annotations
77740view12:59, 16 October 2014SbohlerModified description
77739view12:58, 16 October 2014SbohlerModified description
77731view12:39, 16 October 2014AnweshaAdded literature reference
77724view12:25, 16 October 2014SbohlerModified description
77720view12:16, 16 October 2014AnweshaNew pathway

External references

DataNodes

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NameTypeDatabase referenceComment
1,3-bisphosphoglycerateMetaboliteC00236 (KEGG Compound)
3-phosphoglycerateMetaboliteCHEBI:17050 (ChEBI)
ADPMetaboliteCHEBI:16761 (ChEBI)
ATPMetaboliteCHEBI:15422 (ChEBI)
NADP+MetaboliteCHEBI:18009 (ChEBI)
NADPHMetaboliteCHEBI:16474 (ChEBI)
RuBisCO activaseProteinA9PFQ2 (Uniprot-TrEMBL)
RuBisCO subunit bindingProteinB9HQD5 (Uniprot-TrEMBL)
RuBisCOProteinB9GXY0 (Uniprot-TrEMBL)
aldolaseProteinA9PJC9 (Uniprot-TrEMBL)
carbon dioxideMetaboliteCHEBI:16526 (ChEBI)
carbonic acidMetaboliteCHEBI:28976 (ChEBI)
carbonic anhydraseProteinQ41088 (Uniprot-TrEMBL)
dihydroxy-acetone phosphateMetaboliteCHEBI:16108 (ChEBI)
erythrose-4-phosphateMetaboliteCHEBI:48153 (ChEBI)
fructose-1,6-bisphosphataseProtein3.1.3.11 (Enzyme Nomenclature)
fructose-1,6-bisphosphateMetaboliteCHEBI:32966 (ChEBI)
fructose-6-phosphateMetaboliteCHEBI:78697 (ChEBI)
glyceraldehyde-3-phosphate dehydrogenaseProteinQ9SNX8 (Uniprot-TrEMBL)
glyceraldehyde-3-phosphateMetaboliteCHEBI:17050 (ChEBI)
phosphoglycerate kinaseProteinB9HY29 (Uniprot-TrEMBL)
phosphoribulokinaseProteinB9GZT5 (Uniprot-TrEMBL)
ribose-5-phosphateMetaboliteCHEBI:17050 (ChEBI)
ribulose-1,5-bisphosphateMetaboliteCHEBI:17050 (ChEBI)
ribulose-5-phosphate epimeraseProtein5.3.1.6 (Enzyme Nomenclature)
ribulose-5-phosphate-3-epimeraseProteinA9PIC8 (Uniprot-TrEMBL)
ribulose-5-phosphateMetaboliteCHEBI:17050 (ChEBI)
sedoheptulose-1,7-bisphosphataseProtein3.1.3.37 (Enzyme Nomenclature)
sedoheptulose-1,7-bisphosphateMetaboliteCHEBI:17969 (ChEBI)
sedoheptulose-7-phosphateMetaboliteCHEBI:15721 (ChEBI)
transketolaseProteinB9GPE7 (Uniprot-TrEMBL)
xylulose-5-phosphateMetaboliteCHEBI:16332 (ChEBI)

Annotated Interactions

No annotated interactions

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