Primary Carbon Metabolism (Populus trichocarpa)

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1, 2PLASMA MEMBRANEstromaLumenlight-harvesting complex II protein Lhcb1O2-evolving Enhancer 2NADP malic enzymeribulose-5-phosphate-3-epimerasesedoheptulose-1,7-bisphosphatecarbonic acidtransketolasetriose phosphate isomeraselight harvesting complex I protein Lhca3RuBisCOO2-evolving Enhancer 1light-harvesting complex I protein Lhca1xylulose-5-phosphatephosphoribulokinaseRuBisCO activasecarbonic anhydrasecarbon dioxideglyceraldehyde-3-phosphate dehydrogenaseO2-evolving Enhancersedoheptulose-1,7-bisphosphataseferredoxin NADP + reductasefructose-1,6-bisphosphatedihydroxy-acetone phosphatePSI reaction center subunit IINADP MDHPSI reaction center subunit IIIRuBisCO subunit bindingfructose-6-phosphatephosphoglycerate kinaseerythrose-4-phosphateATPase betafructose-1,6-bisphosphatasefructose-1,6-bisphosphataseADPATPNADP+NADPH3-phosphoglycerateglyceraldehyde-3-phosphateribose-5-phosphatealdolaseribulose-1,5-bisphosphateribulose-5-phosphatepyruvateacetyl-CoAmalateglucosesucrosefructose-6-phosphatecitric acidcis-aconitic acidisocitric acid2-oxoglutaric acidsuccinic acidsuccinyl-CoAfructose 1,6 Bisphosphateglyceraldehyde 3-phosphate1,3-bisphosphoglycerate3-phosphoglyceric acid2-phosphoglyceric acidphosphoenolpyruvic acidpyruvateoxaloacetic acidmalic acidoxaloacetic acidDHAPglucose-6-phosphatefructose-1,6-bisphosphate aldolaseglyceraldehyde-3-phosphate dehydrogenaseCYTOSOLCHOLOROPLASTstarch1,3-bisphosphoglyceratetransketolasealdolasesedoheptulose-7-phosphateribulose-5-phosphate epimeraseADPATPNADP+NADPHADPATPfumaric acidMITOCHONDRIONNAD+NADHNAD+NADHNAD+NADHNAD+NADHADPATPFAD+FADHADPATPADPATPADPATPNAD+NADHADPATP


Description

This plant pathway represents the primary carbon metabolism in plants including Calvin cycle (WP2860) and Photosynthetic electron transport chain (WP2861)(chloroplast), Glycolysis (WP2862) (cytosol) and Krebs cycle (WP2863) (mitochondrion).

Quality Tags

Ontology Terms

 

Bibliography

  1. Bohler S, Sergeant K, Lefèvre I, Jolivet Y, Hoffmann L, Renaut J, Dizengremel P, Hausman JF; ''Differential impact of chronic ozone exposure on expanding and fully expanded poplar leaves.''; Tree Physiol, 2010 PubMed
  2. Taiz, Zeiger; ''Plant Physiology''; , Third edition

History

View all...
CompareRevisionActionTimeUserComment
102770view21:08, 23 January 2019MaintBotFixed the casing of two ChEBI identifiers (prefix should be CHEBI: instead of ChEBI:)
88346view16:11, 1 August 2016FehrhartOntology Term : 'classic metabolic pathway' added !
82863view15:54, 10 November 2015JmeliusUpdate outdated id
78463view10:27, 7 January 2015MaintBotadded missing graphIds
78142view13:15, 5 December 2014AnweshaFixed metabolite and protein annotations
77847view08:36, 22 October 2014SbohlerPeriodical save, work in progress
77846view08:25, 22 October 2014SbohlerAdded NAD(H), FAD(H), and ADP/ATP couples to Krebs cycle
77742view13:03, 16 October 2014SbohlerModified description
77732view12:41, 16 October 2014AnweshaAdded literature refernce and the organelle mitochondrion
77722view12:21, 16 October 2014SbohlerModified description
77721view12:18, 16 October 2014SbohlerAdded book reference
77719view12:04, 16 October 2014AnweshaNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
1,3-bisphosphoglycerateMetaboliteC00236 (KEGG Compound)
2-oxoglutaric acidMetaboliteCHEBI:30915 (ChEBI)
2-phosphoglyceric acidMetaboliteCHEBI:24344 (ChEBI)
3-phosphoglycerateMetaboliteCHEBI:17050 (ChEBI)
3-phosphoglyceric acidMetaboliteCHEBI:17050 (ChEBI)
ADPMetaboliteCHEBI:16761 (ChEBI)
ATPMetaboliteCHEBI:15422 (ChEBI)
ATPase betaProteinQ8MCB3 (Uniprot-TrEMBL)
DHAPMetaboliteCHEBI:16108 (ChEBI)
FAD+MetaboliteCHEBI:18009 (ChEBI)
FADHMetaboliteCHEBI:16474 (ChEBI)
NAD+MetaboliteCHEBI:18009 (ChEBI)
NADHMetaboliteCHEBI:16474 (ChEBI)
NADP MDHProteinA9P8R3 (Uniprot-TrEMBL)
NADP malic enzymeProteinB9ILT5 (Uniprot-TrEMBL)
NADP+MetaboliteCHEBI:18009 (ChEBI)
NADPHMetaboliteCHEBI:16474 (ChEBI)
O2-evolving Enhancer 1ProteinB3VY32 (Uniprot-TrEMBL)
O2-evolving Enhancer 2ProteinA9PHM0 (Uniprot-TrEMBL)
O2-evolving EnhancerProteinA9PFR3 (Uniprot-TrEMBL)
PSI reaction center subunit IIProteinA9PJR8 (Uniprot-TrEMBL)
PSI reaction center subunit IIIProteinPOPTR_0002s25510 (Ensembl)
RuBisCO activaseProteinA9PFQ2 (Uniprot-TrEMBL)
RuBisCO subunit bindingProteinB9HQD5 (Uniprot-TrEMBL)
RuBisCOProteinB9GXY0 (Uniprot-TrEMBL)
acetyl-CoAMetaboliteCHEBI:15351 (ChEBI)
aldolaseProteinA9PJC9 (Uniprot-TrEMBL)
carbon dioxideMetaboliteCHEBI:16526 (ChEBI)
carbonic acidMetaboliteCHEBI:28976 (ChEBI)
carbonic anhydraseProteinQ41088 (Uniprot-TrEMBL)
cis-aconitic acidMetaboliteCHEBI:32805 (ChEBI)
citric acidMetaboliteCHEBI:30769 (ChEBI)
dihydroxy-acetone phosphateMetaboliteCHEBI:16108 (ChEBI)
erythrose-4-phosphateMetaboliteCHEBI:48153 (ChEBI)
ferredoxin NADP + reductaseProteinP00455 (Uniprot-TrEMBL)
fructose 1,6 BisphosphateMetaboliteCHEBI:78682 (ChEBI)
fructose-1,6-bisphosphataseProtein3.1.3.11 (Enzyme Nomenclature)
fructose-1,6-bisphosphataseProteinB9H7R7 (Uniprot-TrEMBL)
fructose-1,6-bisphosphate aldolaseProteinA9PJC9 (Uniprot-TrEMBL)
fructose-1,6-bisphosphateMetaboliteCHEBI:32966 (ChEBI)
fructose-6-phosphateMetaboliteCHEBI:78697 (ChEBI)
fumaric acidMetaboliteCHEBI:18012 (ChEBI)
glucose-6-phosphateMetaboliteCHEBI:14314 (ChEBI)
glucoseMetaboliteCHEBI:17234 (ChEBI)
glyceraldehyde 3-phosphateMetaboliteCHEBI:17138 (ChEBI)
glyceraldehyde-3-phosphate dehydrogenaseProteinQ9SNX8 (Uniprot-TrEMBL)
glyceraldehyde-3-phosphateMetaboliteCHEBI:17050 (ChEBI)
isocitric acidMetaboliteCHEBI:30887 (ChEBI)
light harvesting complex I protein Lhca3ProteinA9PK62 (Uniprot-TrEMBL)
light-harvesting complex I protein Lhca1ProteinA9PJ58 (Uniprot-TrEMBL)
light-harvesting complex II protein Lhcb1ProteinA9PJK6 (Uniprot-TrEMBL)
malateMetaboliteCHEBI:15361 (ChEBI)
malic acidMetaboliteCHEBI:6650 (ChEBI)
oxaloacetic acidMetaboliteCHEBI:30744 (ChEBI)
phosphoenolpyruvic acidMetaboliteCHEBI:44897 (ChEBI)
phosphoglycerate kinaseProteinB9HY29 (Uniprot-TrEMBL)
phosphoribulokinaseProteinB9GZT5 (Uniprot-TrEMBL)
pyruvateMetaboliteCHEBI:15361 (ChEBI)
ribose-5-phosphateMetaboliteCHEBI:17050 (ChEBI)
ribulose-1,5-bisphosphateMetaboliteCHEBI:17050 (ChEBI)
ribulose-5-phosphate epimeraseProtein5.3.1.6 (Enzyme Nomenclature)
ribulose-5-phosphate-3-epimeraseProteinA9PIC8 (Uniprot-TrEMBL)
ribulose-5-phosphateMetaboliteCHEBI:17050 (ChEBI)
sedoheptulose-1,7-bisphosphataseProtein3.1.3.37 (Enzyme Nomenclature)
sedoheptulose-1,7-bisphosphateMetaboliteCHEBI:17969 (ChEBI)
sedoheptulose-7-phosphateMetaboliteCHEBI:15721 (ChEBI)
starchMetaboliteCHEBI:28017 (ChEBI)
succinic acidMetaboliteCHEBI:15741 (ChEBI)
succinyl-CoAMetaboliteCHEBI:15380 (ChEBI)
sucroseMetaboliteCHEBI:17992 (ChEBI)
transketolaseProteinB9GPE7 (Uniprot-TrEMBL)
triose phosphate isomeraseProteinA9PE68 (Uniprot-TrEMBL)
xylulose-5-phosphateMetaboliteCHEBI:16332 (ChEBI)

Annotated Interactions

No annotated interactions

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