Glycolysis (Arabidopsis thaliana)

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1ChloroplastglucoseNAD+glycerate 3-phosphateglycerate 1,3-bisphosphateglucose 6-phosphateglucose-6-phosphate isomeraseNADHfructose 6-phosphatepyruvatefructose 1,6-bisphosphateglycerate 2-phosphatephosphoglycerate kinaseoxaloacetatePPimalatefructose 1,6-bisphosphate aldolasephosphoenolpyruvateDihydroxyacetone phosphateglyceraldahyde-3-phosphatetriose phosphate isomeraseATPADPNAD+NADHATPADPPiATPADPPiSucrose MetabolismStarch MetabolismCalvin-Benson CycleTCA Cycle(Krebs Cycle)Valine and IsoleucineBiosynthesisCysteine and MethionineBiosynthesisLysineBiosynthesisChloroplastMitochondrionATPADPhexokinase 22, 3PPi-dependent phosphofructokinase beta 1PPi-dependent phosphofructokinase beta 2PPi-dependent phosphofructokinase alpha 1PPi-dependent phosphofructokinase alpha 2ATP-dependent phosphofructokinase 1ATP-dependent phosphofructokinase 2ATP-dependent phosphofructokinase 3ATP-dependent phosphofructokinase 6ATP-dependent phosphofructokinase 7glyceraldehyde 3-phosphate dehydrogenase 1glyceraldehyde 3-phosphate dehydrogenase 2phosphoglycerate mutase 1phosphoglycerate mutase 2H2Oenolase 2enolase 3phosphoenolpyruvate carboxylase 4HCO3-Piphosphoenolpyruvate carboxylase 2phosphoenolpyruvate carboxylase 1phosphoenolpyruvate carboxylase 3malate dehydrogenase 2malate dehydrogenase 1malic enzyme 1NADPHNADP+malic enzyme 2malic enzyme 3pyruvate kinasepyruvate kinasepyruvate kinasepyruvate kinasepyruvate kinasepyruvate kinasepyruvate kinasepyruvate kinase


Description

This pathway describes Glycolysis reactions in A. thaliana. The metabolic links with Sucrose metabolism, starch metabolism, Calvin Cycle, TCA Cycle (Krebs Cycle) and Chloroplastic Amino Acid Biosynthesis are represented.

Protein identifiers for A. thaliana are from UNIPROT.

The pathway is inspired from information drawn for Plant Physiology (Taiz and Zeiger) Third Edition and KEGG Pathways.

Quality Tags

Ontology Terms

 

Bibliography

  1. Lincoln Taiz, Eduardo Zeiger; ''Chapter 11''; Plant Physiology, third edition, 2002
  2. Karve A, Rauh BL, Xia X, Kandasamy M, Meagher RB, Sheen J, Moore BD; ''Expression and evolutionary features of the hexokinase gene family in Arabidopsis.''; Planta, 2008 PubMed Europe PMC
  3. Karve A, Rauh BL, Xia X, Kandasamy M, Meagher RB, Sheen J, Moore BD; ''Expression and evolutionary features of the hexokinase gene family in Arabidopsis.''; Planta, 2008 PubMed Europe PMC

History

View all...
CompareRevisionActionTimeUserComment
105900view11:36, 16 August 2019MkutmonHMDB identifier normalization
78381view10:22, 7 January 2015MaintBotadded missing graphIds
76229view12:05, 19 June 2014SbohlerAll protein noder are now annotated with UNIPROT IDs. Information about protein isoforms was added. Subcellular location of hexokinase 2 was verified by litterature, since the information is stated wrongly in UNIPROT.
75324view13:31, 19 May 2014SbohlerAdded cell border, added RNAs for GAPC1, GAPC2, NADP-ME 1, 2 and 3.
73929view11:13, 4 March 2014AnweshaModified description
73928view11:08, 4 March 2014SbohlerModified description
73927view11:05, 4 March 2014AnweshaAdded metabolite identifiers
73926view11:03, 4 March 2014AnweshaAdded metabolite identifiers
73925view10:58, 4 March 2014AnweshaAdded pathway identifiers
73878view21:50, 26 February 2014MaintBotOntology Term : 'glycolysis pathway' added !
73680view08:28, 15 February 2014EgonwAdded a bunch of missing metabolite identifiers.
73621view11:19, 6 February 2014SbohlerPeriodical save, work in progress
73620view10:54, 6 February 2014SbohlerAdded organelle labels
73605view13:22, 4 February 2014AnweshaNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
ADPMetabolite
ADPMetaboliteCHEBI:16761 (ChEBI)
ATP-dependent phosphofructokinase 1ProteinQ9M0F9 (Uniprot-TrEMBL)
ATP-dependent phosphofructokinase 2ProteinQ9FIK0 (Uniprot-TrEMBL)
ATP-dependent phosphofructokinase 3ProteinQ94AA4 (Uniprot-TrEMBL)
ATP-dependent phosphofructokinase 6ProteinQ9M076 (Uniprot-TrEMBL)
ATP-dependent phosphofructokinase 7ProteinQ9C5J7 (Uniprot-TrEMBL)
ATPMetaboliteHMDB0000538 (HMDB)
Calvin-Benson CyclePathwayWP2624 (WikiPathways)
Cysteine and Methionine BiosynthesisPathway
Dihydroxyacetone phosphateMetaboliteHMDB0001473 (HMDB)
H2OMetabolite
HCO3-Metabolite
Lysine BiosynthesisPathway
NAD+MetaboliteHMDB0000902 (HMDB)
NADHMetaboliteHMDB0001487 (HMDB)
NADP+MetaboliteHMDB0000217 (HMDB)
NADPHMetaboliteHMDB0000221 (HMDB)
PPi-dependent phosphofructokinase alpha 1ProteinQ9SYP2 (Uniprot-TrEMBL)
PPi-dependent phosphofructokinase alpha 2ProteinQ9C9K3 (Uniprot-TrEMBL)
PPi-dependent phosphofructokinase beta 1ProteinQ8W4M5 (Uniprot-TrEMBL)
PPi-dependent phosphofructokinase beta 2ProteinF4JGR5 (Uniprot-TrEMBL)
PPiMetaboliteCHEBI:35782 (ChEBI)
PiMetabolite
PiMetaboliteCHEBI:18367 (ChEBI)
Starch Metabolism PathwayWP2622 (WikiPathways)
Sucrose Metabolism PathwayWP2622 (WikiPathways)
TCA Cycle (Krebs Cycle)PathwayWP2624 (WikiPathways)
Valine and Isoleucine BiosynthesisPathway
enolase 2ProteinP25696 (Uniprot-TrEMBL)
enolase 3ProteinQ9ZW34 (Uniprot-TrEMBL)
fructose 1,6-bisphosphate aldolaseProteinP22197 (Uniprot-TrEMBL)
fructose 1,6-bisphosphateMetaboliteHMDB0001058 (HMDB)
fructose 6-phosphateMetaboliteHMDB0000124 (HMDB)
glucose 6-phosphateMetaboliteHMDB0001401 (HMDB)
glucose-6-phosphate isomeraseProteinP34795 (Uniprot-TrEMBL)
glucoseMetaboliteHMDB0000122 (HMDB)
glyceraldahyde-3-phosphateMetaboliteC00118 (KEGG Compound)
glyceraldehyde 3-phosphate dehydrogenase 1ProteinP25858 (Uniprot-TrEMBL)
glyceraldehyde 3-phosphate dehydrogenase 2ProteinQ9FX54 (Uniprot-TrEMBL)
glycerate 1,3-bisphosphateMetaboliteCHEBI:16001 (ChEBI)
glycerate 2-phosphateMetaboliteCHEBI:58289 (ChEBI)
glycerate 3-phosphateMetaboliteCHEBI:58272 (ChEBI)
hexokinase 2ProteinP93834 (Uniprot-TrEMBL)
malate dehydrogenase 1ProteinP93819 (Uniprot-TrEMBL)
malate dehydrogenase 2ProteinP57106 (Uniprot-TrEMBL)
malateMetaboliteCHEBI:15595 (ChEBI)
malic enzyme 1ProteinO82191 (Uniprot-TrEMBL)
malic enzyme 2ProteinQ9LYG3 (Uniprot-TrEMBL)
malic enzyme 3ProteinQ9XGZ0 (Uniprot-TrEMBL)
oxaloacetateMetaboliteCHEBI:16452 (ChEBI)
phosphoenolpyruvate carboxylase 1ProteinQ9MAH0 (Uniprot-TrEMBL)
phosphoenolpyruvate carboxylase 2ProteinQ5GM68 (Uniprot-TrEMBL)
phosphoenolpyruvate carboxylase 3ProteinQ84VW9 (Uniprot-TrEMBL)
phosphoenolpyruvate carboxylase 4ProteinQ8GVE8 (Uniprot-TrEMBL)
phosphoenolpyruvateMetaboliteC00074 (KEGG Compound)
phosphoglycerate kinaseProteinQ9SAJ4 (Uniprot-TrEMBL)
phosphoglycerate mutase 1ProteinO04499 (Uniprot-TrEMBL)
phosphoglycerate mutase 2ProteinQ9M9K1 (Uniprot-TrEMBL)
pyruvate kinaseProteinQ94KE3 (Uniprot-TrEMBL)
pyruvate kinaseProteinQ9FFP6 (Uniprot-TrEMBL)
pyruvate kinaseProteinQ9FNN1 (Uniprot-TrEMBL)
pyruvate kinaseProteinQ9LU95 (Uniprot-TrEMBL)
pyruvate kinaseProteinQ9M044 (Uniprot-TrEMBL)
pyruvate kinaseProteinQ9M057 (Uniprot-TrEMBL)
pyruvate kinaseProteinQ9SJQ0 (Uniprot-TrEMBL)
pyruvate kinaseProteinQ9SQQ7 (Uniprot-TrEMBL)
pyruvateMetaboliteCHEBI:15361 (ChEBI)
triose phosphate isomeraseProteinP48491 (Uniprot-TrEMBL)

Annotated Interactions

No annotated interactions

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