Flowering Time Pathway (Oryza sativa)

From WikiPathways

Jump to: navigation, search
FLOWERINGNF-YA6NF-YA5NF-YA10bNF-YA10aNF-YA1NF-YA3NF-YA2NF-YA8NF-YA4 26, 92FACPR COMPLEXSDVNo orthologs in riceLDSDNF-YA subunit80, 145Co-regulationExpression is alteredVernalizationInhibition; Down-regulationActivation; Up-regulationNo orthologs foundComplexShort DayKEYBindTo be moved into PathwayParalogsTranscript to ProteinPIE1OsMADS6NF-YC2OsMADS14VIP4aCDC73PIE1OsCRY1bPHYCFRL2ABH1OsPRP3OsMFT1GISRT2OsMADS51OsMADS3NF-YB11OsbZIP10OsCO3FVEFIEUV-DDBNDPK2ESD4aFD1PAF1LUXELF5LEC1AOsCDF1bhlh105Hd1HAP3FFLGAMybELF9EZ3LHP1ELF3aELF4NF-YC10ID1VIL2SLR1OsMADS8FPF1NF-YC8TOC1SPL13Dof12VIL2bhlh102GIELF3bZnF36FTL1COP1SPYMADS18MAF1TICCKB1FYPP3TCPL1GF14cRAV1-like1ZOS9-19WNK4NF-YB1GF14bPRR59NF-YC2aHAP3ISDG25EFSFCACDF5Ghd7OsLDSLR1COP1CKA1OSE2LKP2FBO10FRIOsMADS7RCN1CSD2REC14VRN5aCOL5OsAREB3COL5ELF7LHP1SRR1FBX77FRL1OsHB1aVEFNF-YC11bZIP23LFL1HFR1Hd2VRN1PHYARBX1Gal1HOS1SEF1OsMADS27SDG26RFT1FUS9ZTLaOsMADS22FBO10ZOS1-20OsMADS50?NF-YC13OsMADS1ZTLaEDM2EZ1ATL6lLEC1BFLXFYELF8Ehd1SPA1DPBF3HAP3DOsPEPJMJ706OsMADS56PHYB/PHYDROC5CRY2FLCDCAF1VIP2LHYPCFS4Hd1SPA2NF-YB4DI19-2JARID1CRCN2SINAT5PIN1OSOsSPL14NF-YB13CUL4BEMFAGL9LDL3miRNAPFT1LUXTOE1ESP4ES43aOsHUA2bZIP72LHP1MAF3FPAGAGID1OsCam2CDF3AP2OsMADS31FIO1OsMADS29LWDFLKGF14eARP6EZ3NF-YB3ActinOsABF2JMJ703MSI1CDF2aCKB4MAF2ATX-1DET1OsMADS5PPR73bhlh102PRMT5CPS1miRNAVRN2JMJ704COL9aPHYBNF-YC1bhlh7924153157972497, 11824, 2997159724538, 10386, 979813429, 9753, 97, 11353, 97368243753, 97534, 1243516424, 29OsMADS15113, 15010253, 15724532218, 5329242424, 292414, 39502424, 299733, 47, 1439716024, 2926, 49, 76, 79Hd3aFD1GF14cLDSDHd3a35, 53, 92, 105ZTLaGI24, 2953, 97CIRCADIAN CLOCKNF-YB subunitNF-YB2NF-YC subunitMAF424MAF524PHYE4PIF7SMZ7024SNZU2AF24LTPL112CRPBZR1POLE1POLA1DPNPaseMYB29 ZOS1-05FAS2SUS2SFR6PHDfLWNK8UV-DDB2WNK1DREB1GDREB1FGibberellic Acid SNF2LHd194OsMADS50Hd3aAutonomous PathwayTo be moved into pathwayDH1140MADS47MADS72MADS61BrassinosteroidSNB91LRK1POLE1ES43bES43aES43bEZ1ZOS9-03EMFZOS9-03Sugar MetabolismMYBHd2Photoperiod CKA2HD6CK2alphaCpWNK8aWNK8b


Description

No description

Quality Tags

Ontology Terms

 

Bibliography

View all...
  1. Jiang D, Yang W, He Y, Amasino RM; ''Arabidopsis relatives of the human lysine-specific Demethylase1 repress the expression of FWA and FLOWERING LOCUS C and thus promote the floral transition.''; Plant Cell, 2007 PubMed Europe PMC
  2. Bommert P, Satoh-Nagasawa N, Jackson D, Hirano HY; ''Genetics and evolution of inflorescence and flower development in grasses.''; Plant Cell Physiol, 2005 PubMed Europe PMC
  3. Schmitz RJ, Sung S, Amasino RM; ''Histone arginine methylation is required for vernalization-induced epigenetic silencing of FLC in winter-annual Arabidopsis thaliana.''; Proc Natl Acad Sci U S A, 2008 PubMed Europe PMC
  4. Higgins JA, Bailey PC, Laurie DA; ''Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.''; PLoS One, 2010 PubMed Europe PMC
  5. Kim SK, Yun CH, Lee JH, Jang YH, Park HY, Kim JK; ''OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice.''; Planta, 2008 PubMed Europe PMC
  6. Morris K, Thornber S, Codrai L, Richardson C, Craig A, Sadanandom A, Thomas B, Jackson S; ''DAY NEUTRAL FLOWERING represses CONSTANS to prevent Arabidopsis flowering early in short days.''; Plant Cell, 2010 PubMed Europe PMC
  7. Nakamichi N, Murakami-Kojima M, Sato E, Kishi Y, Yamashino T, Mizuno T; ''Compilation and characterization of a novel WNK family of protein kinases in Arabiodpsis thaliana with reference to circadian rhythms.''; Biosci Biotechnol Biochem, 2002 PubMed Europe PMC
  8. Yu X, Li L, Guo M, Chory J, Yin Y; ''Modulation of brassinosteroid-regulated gene expression by Jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis.''; Proc Natl Acad Sci U S A, 2008 PubMed Europe PMC
  9. Salinas P, Fuentes D, Vidal E, Jordana X, Echeverria M, Holuigue L; ''An extensive survey of CK2 alpha and beta subunits in Arabidopsis: multiple isoforms exhibit differential subcellular localization.''; Plant Cell Physiol, 2006 PubMed Europe PMC
  10. Fornara F, Panigrahi KC, Gissot L, Sauerbrunn N, R��hl M, Jarillo JA, Coupland G; ''Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response.''; Dev Cell, 2009 PubMed Europe PMC
  11. Pien S, Fleury D, Mylne JS, Crevillen P, Inz�� D, Avramova Z, Dean C, Grossniklaus U; ''ARABIDOPSIS TRITHORAX1 dynamically regulates FLOWERING LOCUS C activation via histone 3 lysine 4 trimethylation.''; Plant Cell, 2008 PubMed Europe PMC
  12. Knight H, Thomson AJ, McWatters HG; ''Sensitive to freezing6 integrates cellular and environmental inputs to the plant circadian clock.''; Plant Physiol, 2008 PubMed Europe PMC
  13. Gawienowski MC, Szymanski D, Perera IY, Zielinski RE; ''Calmodulin isoforms in Arabidopsis encoded by multiple divergent mRNAs.''; Plant Mol Biol, 1993 PubMed Europe PMC
  14. Jeon JS, Jang S, Lee S, Nam J, Kim C, Lee SH, Chung YY, Kim SR, Lee YH, Cho YG, An G; ''leafy hull sterile1 is a homeotic mutation in a rice MADS box gene affecting rice flower development.''; Plant Cell, 2000 PubMed Europe PMC
  15. Yamashino T, Matsushika A, Fujimori T, Sato S, Kato T, Tabata S, Mizuno T; ''A Link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana.''; Plant Cell Physiol, 2003 PubMed Europe PMC
  16. Noble SM, French S, Kohn LA, Chen V, Johnson AD; ''Systematic screens of a Candida albicans homozygous deletion library decouple morphogenetic switching and pathogenicity.''; Nat Genet, 2010 PubMed Europe PMC
  17. Kim DH, Kang JG, Yang SS, Chung KS, Song PS, Park CM; ''A phytochrome-associated protein phosphatase 2A modulates light signals in flowering time control in Arabidopsis.''; Plant Cell, 2002 PubMed Europe PMC
  18. Peng LT, Shi ZY, Li L, Shen GZ, Zhang JL; ''Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter.''; Biochem Biophys Res Commun, 2007 PubMed Europe PMC
  19. Zhang H, Ransom C, Ludwig P, van Nocker S; ''Genetic analysis of early flowering mutants in Arabidopsis defines a class of pleiotropic developmental regulator required for expression of the flowering-time switch flowering locus C.''; Genetics, 2003 PubMed Europe PMC
  20. Xu L, Zhao Z, Dong A, Soubigou-Taconnat L, Renou JP, Steinmetz A, Shen WH; ''Di- and tri- but not monomethylation on histone H3 lysine 36 marks active transcription of genes involved in flowering time regulation and other processes in Arabidopsis thaliana.''; Mol Cell Biol, 2008 PubMed Europe PMC
  21. Chen H, Shen Y, Tang X, Yu L, Wang J, Guo L, Zhang Y, Zhang H, Feng S, Strickland E, Zheng N, Deng XW; ''Arabidopsis CULLIN4 Forms an E3 Ubiquitin Ligase with RBX1 and the CDD Complex in Mediating Light Control of Development.''; Plant Cell, 2006 PubMed Europe PMC
  22. Park BS, Eo HJ, Jang IC, Kang HG, Song JT, Seo HS; ''Ubiquitination of LHY by SINAT5 regulates flowering time and is inhibited by DET1.''; Biochem Biophys Res Commun, 2010 PubMed Europe PMC
  23. Xing D, Zhao H, Xu R, Li QQ; ''Arabidopsis PCFS4, a homologue of yeast polyadenylation factor Pcf11p, regulates FCA alternative processing and promotes flowering time.''; Plant J, 2008 PubMed Europe PMC
  24. Higgins JA, Bailey PC, Laurie DA; ''Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.''; PLoS One, 2010 PubMed Europe PMC
  25. Agarwal, P., Jha, B.; ''Transcription factors in plants and ABA dependent and independent abiotic stress signalling''; Biologia Plantarum, 2010
  26. Taoka K, Ohki I, Tsuji H, Furuita K, Hayashi K, Yanase T, Yamaguchi M, Nakashima C, Purwestri YA, Tamaki S, Ogaki Y, Shimada C, Nakagawa A, Kojima C, Shimamoto K; ''14-3-3 proteins act as intracellular receptors for rice Hd3a florigen.''; Nature, 2011 PubMed Europe PMC
  27. Cheng XF, Wang ZY; ''Overexpression of COL9, a CONSTANS-LIKE gene, delays flowering by reducing expression of CO and FT in Arabidopsis thaliana.''; Plant J, 2005 PubMed Europe PMC
  28. Wang X, Zhang Y, Ma Q, Zhang Z, Xue Y, Bao S, Chong K; ''SKB1-mediated symmetric dimethylation of histone H4R3 controls flowering time in Arabidopsis.''; EMBO J, 2007 PubMed Europe PMC
  29. Murakami M, Tago Y, Yamashino T, Mizuno T; ''Comparative overviews of clock-associated genes of Arabidopsis thaliana and Oryza sativa.''; Plant Cell Physiol, 2007 PubMed Europe PMC
  30. Bernhardt A, Lechner E, Hano P, Schade V, Dieterle M, Anders M, Dubin MJ, Benvenuto G, Bowler C, Genschik P, Hellmann H; ''CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana.''; Plant J, 2006 PubMed Europe PMC
  31. Eulgem T, Tsuchiya T, Wang XJ, Beasley B, Cuzick A, T��r M, Zhu T, McDowell JM, Holub E, Dangl JL; ''EDM2 is required for RPP7-dependent disease resistance in Arabidopsis and affects RPP7 transcript levels.''; Plant J, 2007 PubMed Europe PMC
  32. Yu X, Li L, Guo M, Chory J, Yin Y; ''Modulation of brassinosteroid-regulated gene expression by Jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis.''; Proc Natl Acad Sci U S A, 2008 PubMed Europe PMC
  33. de Folter S, Immink RG, Kieffer M, Parenicov�� L, Henz SR, Weigel D, Busscher M, Kooiker M, Colombo L, Kater MM, Davies B, Angenent GC; ''Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.''; Plant Cell, 2005 PubMed Europe PMC
  34. Yamaguchi A, Wu MF, Yang L, Wu G, Poethig RS, Wagner D; ''The microRNA-regulated SBP-Box transcription factor SPL3 is a direct upstream activator of LEAFY, FRUITFULL, and APETALA1.''; Dev Cell, 2009 PubMed Europe PMC
  35. Kojima S, Takahashi Y, Kobayashi Y, Monna L, Sasaki T, Araki T, Yano M; ''Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions.''; Plant Cell Physiol, 2002 PubMed Europe PMC
  36. Wang Y, Liu K, Liao H, Zhuang C, Ma H, Yan X; ''The plant WNK gene family and regulation of flowering time in Arabidopsis.''; Plant Biol (Stuttg), 2008 PubMed Europe PMC
  37. Ishikawa R, Aoki M, Kurotani K, Yokoi S, Shinomura T, Takano M, Shimamoto K; ''Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice.''; Mol Genet Genomics, 2011 PubMed Europe PMC
  38. Zhang Y, Feng S, Chen F, Chen H, Wang J, McCall C, Xiong Y, Deng XW; ''Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes.''; Plant Cell, 2008 PubMed Europe PMC
  39. Wang K, Tang D, Hong L, Xu W, Huang J, Li M, Gu M, Xue Y, Cheng Z; ''DEP and AFO regulate reproductive habit in rice.''; PLoS Genet, 2010 PubMed Europe PMC
  40. Farinas B, Mas P; ''Functional implication of the MYB transcription factor RVE8/LCL5 in the circadian control of histone acetylation.''; Plant J, 2011 PubMed Europe PMC
  41. Rawat R, Takahashi N, Hsu PY, Jones MA, Schwartz J, Salemi MR, Phinney BS, Harmer SL; ''REVEILLE8 and PSEUDO-REPONSE REGULATOR5 form a negative feedback loop within the Arabidopsis circadian clock.''; PLoS Genet, 2011 PubMed Europe PMC
  42. Mouhu K, Hyt��nen T, Folta K, Rantanen M, Paulin L, Auvinen P, Elomaa P; ''Identification of flowering genes in strawberry, a perennial SD plant.''; BMC Plant Biol, 2009 PubMed Europe PMC
  43. Fornara F, Coupland G; ''Plant phase transitions make a SPLash.''; Cell, 2009 PubMed Europe PMC
  44. Herr AJ, Moln��r A, Jones A, Baulcombe DC; ''Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis.''; Proc Natl Acad Sci U S A, 2006 PubMed Europe PMC
  45. Knight H, Thomson AJ, McWatters HG; ''''; , PubMed Europe PMC
  46. Jiang D, Wang Y, He Y; ''Repression of FLOWERING LOCUS C and FLOWERING LOCUS T by the Arabidopsis Polycomb repressive complex 2 components.''; PLoS One, 2008 PubMed Europe PMC
  47. Ohmori S, Kimizu M, Sugita M, Miyao A, Hirochika H, Uchida E, Nagato Y, Yoshida H; ''MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice.''; Plant Cell, 2009 PubMed Europe PMC
  48. Shi Y, Zhang X, Xu ZY, Li L, Zhang C, Schl��ppi M, Xu ZQ; ''Influence of EARLI1-like genes on flowering time and lignin synthesis of Arabidopsis thaliana.''; Plant Biol (Stuttg), 2011 PubMed Europe PMC
  49. Wang BB, Brendel V; ''Molecular characterization and phylogeny of U2AF35 homologs in plants.''; Plant Physiol, 2006 PubMed Europe PMC
  50. Scortecci KC, Michaels SD, Amasino RM; ''Identification of a MADS-box gene, FLOWERING LOCUS M, that represses flowering.''; Plant J, 2001 PubMed Europe PMC
  51. Kang X, Zhou Y, Sun X, Ni M; ''HYPERSENSITIVE TO RED AND BLUE 1 and its C-terminal regulatory function control FLOWERING LOCUS T expression.''; Plant J, 2007 PubMed Europe PMC
  52. Chrost B, Kolukisaoglu U, Schulz B, Krupinska K; ''''; , PubMed Europe PMC
  53. Ryu CH, Lee S, Cho LH, Kim SL, Lee YS, Choi SC, Jeong HJ, Yi J, Park SJ, Han CD, An G; ''OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice.''; Plant Cell Environ, 2009 PubMed Europe PMC
  54. Chanvivattana Y, Bishopp A, Schubert D, Stock C, Moon YH, Sung ZR, Goodrich J; ''Interaction of Polycomb-group proteins controlling flowering in Arabidopsis.''; Development, 2004 PubMed Europe PMC
  55. Bond DM, Dennis ES, Pogson BJ, Finnegan EJ; ''Histone acetylation, VERNALIZATION INSENSITIVE 3, FLOWERING LOCUS C, and the vernalization response.''; Mol Plant, 2009 PubMed Europe PMC
  56. Choi K, Park C, Lee J, Oh M, Noh B, Lee I; ''Arabidopsis homologs of components of the SWR1 complex regulate flowering and plant development.''; Development, 2007 PubMed Europe PMC
  57. Ni M, Tepperman JM, Quail PH; ''PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein.''; Cell, 1998 PubMed Europe PMC
  58. Higgins JA, Bailey PC, Laurie DA; ''Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.''; PLoS One, 2010 PubMed Europe PMC
  59. Yu X, Michaels SD; ''The Arabidopsis Paf1c complex component CDC73 participates in the modification of FLOWERING LOCUS C chromatin.''; Plant Physiol, 2010 PubMed Europe PMC
  60. Kumimoto RW, Zhang Y, Siefers N, Holt BF 3rd; ''NF-YC3, NF-YC4 and NF-YC9 are required for CONSTANS-mediated, photoperiod-dependent flowering in Arabidopsis thaliana.''; Plant J, 2010 PubMed Europe PMC
  61. Koo SC, Bracko O, Park MS, Schwab R, Chun HJ, Park KM, Seo JS, Grbic V, Balasubramanian S, Schmid M, Godard F, Yun DJ, Lee SY, Cho MJ, Weigel D, Kim MC; ''Control of lateral organ development and flowering time by the Arabidopsis thaliana MADS-box Gene AGAMOUS-LIKE6.''; Plant J, 2010 PubMed Europe PMC
  62. Seo PJ, Ryu J, Kang SK, Park CM; ''Modulation of sugar metabolism by an INDETERMINATE DOMAIN transcription factor contributes to photoperiodic flowering in Arabidopsis.''; Plant J, 2011 PubMed Europe PMC
  63. Franklin KA, Whitelam GC; ''Light-quality regulation of freezing tolerance in Arabidopsis thaliana.''; Nat Genet, 2007 PubMed Europe PMC
  64. Hong-Hermesdorf A, Br��x A, Gr��ber A, Gr��ber G, Schumacher K; ''A WNK kinase binds and phosphorylates V-ATPase subunit C.''; FEBS Lett, 2006 PubMed Europe PMC
  65. Gillmor CS, Park MY, Smith MR, Pepitone R, Kerstetter RA, Poethig RS; ''The MED12-MED13 module of Mediator regulates the timing of embryo patterning in Arabidopsis.''; Development, 2010 PubMed Europe PMC
  66. Wang Y, Liu K, Liao H, Zhuang C, Ma H, Yan X; ''The plant WNK gene family and regulation of flowering time in Arabidopsis.''; Plant Biol (Stuttg), 2008 PubMed Europe PMC
  67. Scortecci KC, Michaels SD, Amasino RM; ''Identification of a MADS-box gene, FLOWERING LOCUS M, that represses flowering.''; Plant J, 2001 PubMed Europe PMC
  68. Purwestri YA, Ogaki Y, Tamaki S, Tsuji H, Shimamoto K; ''The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a.''; Plant Cell Physiol, 2009 PubMed Europe PMC
  69. Magome H, Yamaguchi S, Hanada A, Kamiya Y, Oda K; ''dwarf and delayed-flowering 1, a novel Arabidopsis mutant deficient in gibberellin biosynthesis because of overexpression of a putative AP2 transcription factor.''; Plant J, 2004 PubMed Europe PMC
  70. Yamashino T, Matsushika A, Fujimori T, Sato S, Kato T, Tabata S, Mizuno T; ''A Link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana.''; Plant Cell Physiol, 2003 PubMed Europe PMC
  71. Proveniers M, Rutjens B, Brand M, Smeekens S; ''The Arabidopsis TALE homeobox gene ATH1 controls floral competency through positive regulation of FLC.''; Plant J, 2007 PubMed Europe PMC
  72. Peng M, Cui Y, Bi YM, Rothstein SJ; ''AtMBD9: a protein with a methyl-CpG-binding domain regulates flowering time and shoot branching in Arabidopsis.''; Plant J, 2006 PubMed Europe PMC
  73. Colombo M, Brambilla V, Marcheselli R, Caporali E, Kater MM, Colombo L; ''A new role for the SHATTERPROOF genes during Arabidopsis gynoecium development.''; Dev Biol, 2010 PubMed Europe PMC
  74. Krichevsky A, Kozlovsky SV, Gutgarts H, Citovsky V; ''Arabidopsis co-repressor complexes containing polyamine oxidase-like proteins and plant-specific histone methyltransferases.''; Plant Signal Behav, 2007 PubMed Europe PMC
  75. He Y, Doyle MR, Amasino RM; ''PAF1-complex-mediated histone methylation of FLOWERING LOCUS C chromatin is required for the vernalization-responsive, winter-annual habit in Arabidopsis.''; Genes Dev, 2004 PubMed Europe PMC
  76. Lim J, Moon YH, An G, Jang SK; ''Two rice MADS domain proteins interact with OsMADS1.''; Plant Mol Biol, 2000 PubMed Europe PMC
  77. Kandasamy MK, Deal RB, McKinney EC, Meagher RB; ''Silencing the nuclear actin-related protein AtARP4 in Arabidopsis has multiple effects on plant development, including early flowering and delayed floral senescence.''; Plant J, 2005 PubMed Europe PMC
  78. Mizukami Y, Ma H; ''Determination of Arabidopsis floral meristem identity by AGAMOUS.''; Plant Cell, 1997 PubMed Europe PMC
  79. Wang K, Tang D, Hong L, Xu W, Huang J, Li M, Gu M, Xue Y, Cheng Z; ''DEP and AFO regulate reproductive habit in rice.''; PLoS Genet, 2010 PubMed Europe PMC
  80. Jiang D, Wang Y, He Y; ''Repression of FLOWERING LOCUS C and FLOWERING LOCUS T by the Arabidopsis Polycomb repressive complex 2 components.''; PLoS One, 2008 PubMed Europe PMC
  81. Lu SX, Knowles SM, Andronis C, Ong MS, Tobin EM; ''CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL function synergistically in the circadian clock of Arabidopsis.''; Plant Physiol, 2009 PubMed Europe PMC
  82. Ma H, Yanofsky MF, Meyerowitz EM; ''AGL1-AGL6, an Arabidopsis gene family with similarity to floral homeotic and transcription factor genes.''; Genes Dev, 1991 PubMed Europe PMC
  83. Peng M, Cui Y, Bi YM, Rothstein SJ; ''AtMBD9: a protein with a methyl-CpG-binding domain regulates flowering time and shoot branching in Arabidopsis.''; Plant J, 2006 PubMed Europe PMC
  84. Berr A, Xu L, Gao J, Cognat V, Steinmetz A, Dong A, Shen WH; ''SET DOMAIN GROUP25 encodes a histone methyltransferase and is involved in FLOWERING LOCUS C activation and repression of flowering.''; Plant Physiol, 2009 PubMed Europe PMC
  85. Murakami-Kojima M, Nakamichi N, Yamashino T, Mizuno T; ''The APRR3 component of the clock-associated APRR1/TOC1 quintet is phosphorylated by a novel protein kinase belonging to the WNK family, the gene for which is also transcribed rhythmically in Arabidopsis thaliana.''; Plant Cell Physiol, 2002 PubMed Europe PMC
  86. Doi K, Izawa T, Fuse T, Yamanouchi U, Kubo T, Shimatani Z, Yano M, Yoshimura A; ''Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1.''; Genes Dev, 2004 PubMed Europe PMC
  87. Benschop JJ, Mohammed S, O'Flaherty M, Heck AJ, Slijper M, Menke FL; ''Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.''; Mol Cell Proteomics, 2007 PubMed Europe PMC
  88. Pi��eiro M, G��mez-Mena C, Schaffer R, Mart��nez-Zapater JM, Coupland G; ''EARLY BOLTING IN SHORT DAYS is related to chromatin remodeling factors and regulates flowering in Arabidopsis by repressing FT.''; Plant Cell, 2003 PubMed Europe PMC
  89. Farinas B, Mas P; ''Histone acetylation and the circadian clock: a role for the MYB transcription factor RVE8/LCL5.''; Plant Signal Behav, 2011 PubMed Europe PMC
  90. Han P, Garc��a-Ponce B, Fonseca-Salazar G, Alvarez-Buylla ER, Yu H; ''AGAMOUS-LIKE 17, a novel flowering promoter, acts in a FT-independent photoperiod pathway.''; Plant J, 2008 PubMed Europe PMC
  91. Lee DY, Lee J, Moon S, Park SY, An G; ''The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem.''; Plant J, 2007 PubMed Europe PMC
  92. ''''; , PubMed Europe PMC
  93. Balasubramanian S, Sureshkumar S, Agrawal M, Michael TP, Wessinger C, Maloof JN, Clark R, Warthmann N, Chory J, Weigel D; ''The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana.''; Nat Genet, 2006 PubMed Europe PMC
  94. Farrona S, Hurtado L, March-D��az R, Schmitz RJ, Florencio FJ, Turck F, Amasino RM, Reyes JC; ''Brahma is required for proper expression of the floral repressor FLC in Arabidopsis.''; PLoS One, 2011 PubMed Europe PMC
  95. Higgins JA, Bailey PC, Laurie DA; ''Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.''; PLoS One, 2010 PubMed Europe PMC
  96. Bezerra IC, Michaels SD, Schomburg FM, Amasino RM; ''Lesions in the mRNA cap-binding gene ABA HYPERSENSITIVE 1 suppress FRIGIDA-mediated delayed flowering in Arabidopsis.''; Plant J, 2004 PubMed Europe PMC
  97. Itoh H, Nonoue Y, Yano M, Izawa T; ''A pair of floral regulators sets critical day length for Hd3a florigen expression in rice.''; Nat Genet, 2010 PubMed Europe PMC
  98. Kang HG, Jang S, Chung JE, Cho YG, An G; ''Characterization of two rice MADS box genes that control flowering time.''; Mol Cells, 1997 PubMed Europe PMC
  99. Flowers JM, Hanzawa Y, Hall MC, Moore RC, Purugganan MD; ''Population genomics of the Arabidopsis thaliana flowering time gene network.''; Mol Biol Evol, 2009 PubMed Europe PMC
  100. Andersson CR, Helliwell CA, Bagnall DJ, Hughes TP, Finnegan EJ, Peacock WJ, Dennis ES; ''The FLX gene of Arabidopsis is required for FRI-dependent activation of FLC expression.''; Plant Cell Physiol, 2008 PubMed Europe PMC
  101. Yoshida N, Yanai Y, Chen L, Kato Y, Hiratsuka J, Miwa T, Sung ZR, Takahashi S; ''EMBRYONIC FLOWER2, a novel polycomb group protein homolog, mediates shoot development and flowering in Arabidopsis.''; Plant Cell, 2001 PubMed Europe PMC
  102. Kang HG, An G; ''Isolation and characterization of a rice MADS box gene belonging to the AGL2 gene family.''; Mol Cells, 1997 PubMed Europe PMC
  103. Chen H, Huang X, Gusmaroli G, Terzaghi W, Lau OS, Yanagawa Y, Zhang Y, Li J, Lee JH, Zhu D, Deng XW; ''Arabidopsis CULLIN4-damaged DNA binding protein 1 interacts with CONSTITUTIVELY PHOTOMORPHOGENIC1-SUPPRESSOR OF PHYA complexes to regulate photomorphogenesis and flowering time.''; Plant Cell, 2010 PubMed Europe PMC
  104. Ding Z, Millar AJ, Davis AM, Davis SJ; ''TIME FOR COFFEE encodes a nuclear regulator in the Arabidopsis thaliana circadian clock.''; Plant Cell, 2007 PubMed Europe PMC
  105. Komiya R, Yokoi S, Shimamoto K; ''A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice.''; Development, 2009 PubMed Europe PMC
  106. Park S, Oh S, Ek-Ramos J, van Nocker S; ''PLANT HOMOLOGOUS TO PARAFIBROMIN is a component of the PAF1 complex and assists in regulating expression of genes within H3K27ME3-enriched chromatin.''; Plant Physiol, 2010 PubMed Europe PMC
  107. Higgins JA, Bailey PC, Laurie DA; ''Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.''; PLoS One, 2010 PubMed Europe PMC
  108. Bernhardt A, Lechner E, Hano P, Schade V, Dieterle M, Anders M, Dubin MJ, Benvenuto G, Bowler C, Genschik P, Hellmann H; ''CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana.''; Plant J, 2006 PubMed Europe PMC
  109. Tamaki S, Matsuo S, Wong HL, Yokoi S, Shimamoto K; ''Hd3a protein is a mobile flowering signal in rice.''; Science, 2007 PubMed Europe PMC
  110. Noh B, Lee SH, Kim HJ, Yi G, Shin EA, Lee M, Jung KJ, Doyle MR, Amasino RM, Noh YS; ''Divergent roles of a pair of homologous jumonji/zinc-finger-class transcription factor proteins in the regulation of Arabidopsis flowering time.''; Plant Cell, 2004 PubMed Europe PMC
  111. Ratcliffe OJ, Kumimoto RW, Wong BJ, Riechmann JL; ''Analysis of the Arabidopsis MADS AFFECTING FLOWERING gene family: MAF2 prevents vernalization by short periods of cold.''; Plant Cell, 2003 PubMed Europe PMC
  112. Wang Y, Liu K, Liao H, Zhuang C, Ma H, Yan X; ''The plant WNK gene family and regulation of flowering time in Arabidopsis.''; Plant Biol (Stuttg), 2008 PubMed Europe PMC
  113. Kim SL, Lee S, Kim HJ, Nam HG, An G; ''OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.''; Plant Physiol, 2007 PubMed Europe PMC
  114. Staiger D, Allenbach L, Salathia N, Fiechter V, Davis SJ, Millar AJ, Chory J, Fankhauser C; ''The Arabidopsis SRR1 gene mediates phyB signaling and is required for normal circadian clock function.''; Genes Dev, 2003 PubMed Europe PMC
  115. Ito S, Nakamichi N, Nakamura Y, Niwa Y, Kato T, Murakami M, Kita M, Mizoguchi T, Niinuma K, Yamashino T, Mizuno T; ''Genetic linkages between circadian clock-associated components and phytochrome-dependent red light signal transduction in Arabidopsis thaliana.''; Plant Cell Physiol, 2007 PubMed Europe PMC
  116. Higgins JA, Bailey PC, Laurie DA; ''Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.''; PLoS One, 2010 PubMed Europe PMC
  117. Chen M, Ni M; ''RFI2, a RING-domain zinc finger protein, negatively regulates CONSTANS expression and photoperiodic flowering.''; Plant J, 2006 PubMed Europe PMC
  118. Higgins JA, Bailey PC, Laurie DA; ''''; , PubMed Europe PMC
  119. Mathieu J, Yant LJ, M��rdter F, K��ttner F, Schmid M; ''Repression of flowering by the miR172 target SMZ.''; PLoS Biol, 2009 PubMed Europe PMC
  120. Higgins JA, Bailey PC, Laurie DA; ''Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.''; PLoS One, 2010 PubMed Europe PMC
  121. Taoka KI, Ohki I, Tsuji H, Furuita K, Hayashi K, Yanase T, Yamaguchi M, Nakashima C, Purwestri YA, Tamaki S, Ogaki Y, Shimada C, Nakagawa A, Kojima C, Shimamoto K; ''14-3-3 proteins act as intracellular receptors for rice Hd3a florigen.''; Nature, 2011 PubMed Europe PMC
  122. Teper-Bamnolker P, Samach A; ''The flowering integrator FT regulates SEPALLATA3 and FRUITFULL accumulation in Arabidopsis leaves.''; Plant Cell, 2005 PubMed Europe PMC
  123. Mayfield JD, Folta KM, Paul AL, Ferl RJ; ''The 14-3-3 Proteins mu and upsilon influence transition to flowering and early phytochrome response.''; Plant Physiol, 2007 PubMed Europe PMC
  124. Farrona S, Hurtado L, March-D��az R, Schmitz RJ, Florencio FJ, Turck F, Amasino RM, Reyes JC; ''Brahma is required for proper expression of the floral repressor FLC in Arabidopsis.''; PLoS One, 2011 PubMed Europe PMC
  125. Kandasamy MK, Deal RB, McKinney EC, Meagher RB; ''''; , PubMed Europe PMC
  126. Mylne JS, Barrett L, Tessadori F, Mesnage S, Johnson L, Bernatavichute YV, Jacobsen SE, Fransz P, Dean C; ''LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC.''; Proc Natl Acad Sci U S A, 2006 PubMed Europe PMC
  127. Iuchi S, Suzuki H, Kim YC, Iuchi A, Kuromori T, Ueguchi-Tanaka M, Asami T, Yamaguchi I, Matsuoka M, Kobayashi M, Nakajima M; ''Multiple loss-of-function of Arabidopsis gibberellin receptor AtGID1s completely shuts down a gibberellin signal.''; Plant J, 2007 PubMed Europe PMC
  128. Pouteau S, Carr�� I, Gaudin V, Ferret V, Lefebvre D, Wilson M; ''Diversification of photoperiodic response patterns in a collection of early-flowering mutants of Arabidopsis.''; Plant Physiol, 2008 PubMed Europe PMC
  129. Kim J, Kim Y, Yeom M, Kim JH, Nam HG; ''FIONA1 is essential for regulating period length in the Arabidopsis circadian clock.''; Plant Cell, 2008 PubMed Europe PMC
  130. Jiang D, Wang Y, He Y; ''Repression of FLOWERING LOCUS C and FLOWERING LOCUS T by the Arabidopsis Polycomb repressive complex 2 components.''; PLoS One, 2008 PubMed Europe PMC
  131. Wu JF, Wang Y, Wu SH; ''Two new clock proteins, LWD1 and LWD2, regulate Arabidopsis photoperiodic flowering.''; Plant Physiol, 2008 PubMed Europe PMC
  132. Sugano S, Andronis C, Green RM, Wang ZY, Tobin EM; ''Protein kinase CK2 interacts with and phosphorylates the Arabidopsis circadian clock-associated 1 protein.''; Proc Natl Acad Sci U S A, 1998 PubMed Europe PMC
  133. Datta S, Hettiarachchi GH, Deng XW, Holm M; ''Arabidopsis CONSTANS-LIKE3 is a positive regulator of red light signaling and root growth.''; Plant Cell, 2006 PubMed Europe PMC
  134. Kang X, Chong J, Ni M; ''HYPERSENSITIVE TO RED AND BLUE 1, a ZZ-type zinc finger protein, regulates phytochrome B-mediated red and cryptochrome-mediated blue light responses.''; Plant Cell, 2005 PubMed Europe PMC
  135. Ikeda Y, Kobayashi Y, Yamaguchi A, Abe M, Araki T; ''Molecular basis of late-flowering phenotype caused by dominant epi-alleles of the FWA locus in Arabidopsis.''; Plant Cell Physiol, 2007 PubMed Europe PMC
  136. Brock MT, Maloof JN, Weinig C; ''Genes underlying quantitative variation in ecologically important traits: PIF4 (phytochrome interacting factor 4) is associated with variation in internode length, flowering time, and fruit set in Arabidopsis thaliana.''; Mol Ecol, 2010 PubMed Europe PMC
  137. Seo E, Yu J, Ryu KH, Lee MM, Lee I; ''WEREWOLF, a Regulator of Root Hair Pattern Formation, Controls Flowering Time through the Regulation of FT mRNA Stability.''; Plant Physiol, 2011 PubMed Europe PMC
  138. Chanvivattana Y, Bishopp A, Schubert D, Stock C, Moon YH, Sung ZR, Goodrich J; ''Interaction of Polycomb-group proteins controlling flowering in Arabidopsis.''; Development, 2004 PubMed Europe PMC
  139. Yaish MW, Peng M, Rothstein SJ; ''AtMBD9 modulates Arabidopsis development through the dual epigenetic pathways of DNA methylation and histone acetylation.''; Plant J, 2009 PubMed Europe PMC
  140. Sun Q, Zhou DX; ''Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development.''; Proc Natl Acad Sci U S A, 2008 PubMed Europe PMC
  141. Pouteau S, Carr�� I, Gaudin V, Ferret V, Lefebvre D, Wilson M; ''Diversification of photoperiodic response patterns in a collection of early-flowering mutants of Arabidopsis.''; Plant Physiol, 2008 PubMed Europe PMC
  142. Adamczyk BJ, Lehti-Shiu MD, Fernandez DE; ''The MADS domain factors AGL15 and AGL18 act redundantly as repressors of the floral transition in Arabidopsis.''; Plant J, 2007 PubMed Europe PMC
  143. Li H, Liang W, Jia R, Yin C, Zong J, Kong H, Zhang D; ''The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice.''; Cell Res, 2010 PubMed Europe PMC
  144. Cui H, Benfey PN; ''Interplay between SCARECROW, GA and LIKE HETEROCHROMATIN PROTEIN 1 in ground tissue patterning in the Arabidopsis root.''; Plant J, 2009 PubMed Europe PMC
  145. Chanvivattana Y, Bishopp A, Schubert D, Stock C, Moon YH, Sung ZR, Goodrich J; ''Interaction of Polycomb-group proteins controlling flowering in Arabidopsis.''; Development, 2004 PubMed Europe PMC
  146. Wang BB, Brendel V; ''Molecular characterization and phylogeny of U2AF35 homologs in plants.''; Plant Physiol, 2006 PubMed Europe PMC
  147. Zhang H, van Nocker S; ''The VERNALIZATION INDEPENDENCE 4 gene encodes a novel regulator of FLOWERING LOCUS C.''; Plant J, 2002 PubMed Europe PMC
  148. Amasino R; ''Seasonal and developmental timing of flowering.''; Plant J, 2010 PubMed Europe PMC
  149. Bond DM, Dennis ES, Pogson BJ, Finnegan EJ; ''Histone acetylation, VERNALIZATION INSENSITIVE 3, FLOWERING LOCUS C, and the vernalization response.''; Mol Plant, 2009 PubMed Europe PMC
  150. Greenup AG, Sasani S, Oliver SN, Talbot MJ, Dennis ES, Hemming MN, Trevaskis B; ''ODDSOC2 is a MADS box floral repressor that is down-regulated by vernalization in temperate cereals.''; Plant Physiol, 2010 PubMed Europe PMC
  151. Kim BH, von Arnim AG; ''FIERY1 regulates light-mediated repression of cell elongation and flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity.''; Plant J, 2009 PubMed Europe PMC
  152. Griffiths J, Murase K, Rieu I, Zentella R, Zhang ZL, Powers SJ, Gong F, Phillips AL, Hedden P, Sun TP, Thomas SG; ''Genetic characterization and functional analysis of the GID1 gibberellin receptors in Arabidopsis.''; Plant Cell, 2006 PubMed Europe PMC
  153. Sun Q, Zhou DX; ''Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development.''; Proc Natl Acad Sci U S A, 2008 PubMed Europe PMC
  154. Barrero JM, Gonz��lez-Bay��n R, del Pozo JC, Ponce MR, Micol JL; ''INCURVATA2 encodes the catalytic subunit of DNA Polymerase alpha and interacts with genes involved in chromatin-mediated cellular memory in Arabidopsis thaliana.''; Plant Cell, 2007 PubMed Europe PMC
  155. del Olmo I, L��pez-Gonz��lez L, Mart��n-Trillo MM, Mart��nez-Zapater JM, Pi��eiro M, Jarillo JA; ''EARLY IN SHORT DAYS 7 (ESD7) encodes the catalytic subunit of DNA polymerase epsilon and is required for flowering repression through a mechanism involving epigenetic gene silencing.''; Plant J, 2010 PubMed Europe PMC
  156. Wang Y, Liu C, Yang D, Yu H, Liou YC; ''Pin1At encoding a peptidyl-prolyl cis/trans isomerase regulates flowering time in Arabidopsis.''; Mol Cell, 2010 PubMed Europe PMC
  157. Komiya R, Yokoi S, Shimamoto K; ''A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice.''; Development, 2009 PubMed Europe PMC
  158. Yang W, Jiang D, Jiang J, He Y; ''A plant-specific histone H3 lysine 4 demethylase represses the floral transition in Arabidopsis.''; Plant J, 2010 PubMed Europe PMC
  159. Tamada Y, Yun JY, Woo SC, Amasino RM; ''ARABIDOPSIS TRITHORAX-RELATED7 is required for methylation of lysine 4 of histone H3 and for transcriptional activation of FLOWERING LOCUS C.''; Plant Cell, 2009 PubMed Europe PMC
  160. Gothandam KM, Nalini E, Karthikeyan S, Shin JS; ''OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance.''; Plant Mol Biol, 2010 PubMed Europe PMC
  161. Fukamatsu Y, Mitsui S, Yasuhara M, Tokioka Y, Ihara N, Fujita S, Kiyosue T; ''Identification of LOV KELCH PROTEIN2 (LKP2)-interacting factors that can recruit LKP2 to nuclear bodies.''; Plant Cell Physiol, 2005 PubMed Europe PMC
  162. Portol��s S, M��s P; ''Altered oscillator function affects clock resonance and is responsible for the reduced day-length sensitivity of CKB4 overexpressing plants.''; Plant J, 2007 PubMed Europe PMC
  163. Nakamichi N, Kita M, Niinuma K, Ito S, Yamashino T, Mizoguchi T, Mizuno T; ''Arabidopsis clock-associated pseudo-response regulators PRR9, PRR7 and PRR5 coordinately and positively regulate flowering time through the canonical CONSTANS-dependent photoperiodic pathway.''; Plant Cell Physiol, 2007 PubMed Europe PMC
  164. Kang HG, Noh YS, Chung YY, Costa MA, An K, An G; ''Phenotypic alterations of petal and sepal by ectopic expression of a rice MADS box gene in tobacco.''; Plant Mol Biol, 1995 PubMed Europe PMC

History

View all...
CompareRevisionActionTimeUserComment
87501view01:46, 25 July 2016AlexanderPicoOntology Term : 'signaling pathway' added !
85054view10:44, 10 April 2016EgonwReplaced a Wikipedia ID with a ChEBI ID.
78366view10:07, 7 January 2015MaintBotadded missing graphIds
74454view17:58, 21 April 2014MaintBotfixed width and height on unrotated shapes
74453view17:55, 21 April 2014MaintBotremoved inconsistent rotation of labeled shapes
74452view17:50, 21 April 2014MaintBotremoved extra line feed characters from label and ID fields
74436view06:34, 20 April 2014EgonwUniform PubMed IDs: only numbers.
72182view23:15, 25 October 2013AlexanderPicoAdded missing xrefs and a lit ref
72074view18:40, 24 October 2013KhanspersUpdated data sources
72073view18:32, 24 October 2013Khanspersfixed empty data sources
72072view18:25, 24 October 2013KhanspersPeriodical save, work in progress
71967view00:08, 24 October 2013MaintBotremoved data source from nodes without identifier
70136view20:53, 12 July 2013MaintBotupdated to 2013 schema
68780view21:51, 7 July 2013EgonwFixed a data source.
58407view22:14, 12 February 2013MaintBotModified categories
47686view23:55, 2 April 2012MamathaNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
?GeneProductNo FLC ortholog. FLC/MAF group of MADS box genes likely evolved after dicot/monocot divergence.
ABH1GeneProductLOC_Os03g22570 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
AGL9GeneProduct4325533 (Entrez Gene)
AP2GeneProductLOC_Os04g55560 (Rice Ensembl Gene)
ARP6GeneProductLOC_Os01g16414 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
ATL6lGeneProductLOC_Os09g29310 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
ATX-1GeneProductLOC_Os09g04890 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
ActinGeneProductLOC_Os08g04280 (Rice Ensembl Gene)
BZR1GeneProductLOC_Os07g39220 (Rice Ensembl Gene)
CDC73GeneProductLOC_Os03g46190 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
CDF2aGeneProductLOC_Os01g15900 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
CDF3GeneProductLOC_Os07g48570 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
CDF5GeneProductLOC_Os01g15900 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
CK2alphaCpGeneProductLOC_Os03g55490 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • LOC_Os07g02350 is the ID that InParanoid retrieved, but homology was already done in the lab
CKA1GeneProductLOC_Os03g55389 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • LOC_Os07g02350 is the ID that InParanoid retrieved, but homology was already done in the lab
CKA2GeneProductLOC_Os03g10940 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • LOC_Os07g02350 is the ID that InParanoid retrieved, but homology was already done in the lab
CKB1GeneProductLOC_Os10g41520 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • See Flowering Time Orthos Clean-25mar10 (Sheet4)
CKB4GeneProductLOC_Os07g31280 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
COL5GeneProductLOC_Os04g42020 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
COL9aGeneProductLOC_Os06g19444 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/RAPDB (August 25, 2010)
COP1GeneProductLOC_Os02g53140 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
CPS1GeneProductLOC_Os02g17780 (Rice Ensembl Gene)
CRPGeneProductLOC_Os07g45400 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, 16-Nov-2011
CRY2GeneProductLOC_Os02g41550 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
CSD2GeneProductLOC_Os08g44770 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
CUL4BGeneProductLOC_Os03g57290 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
DCAF1GeneProductLOC_Os04g59460 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
DET1GeneProductLOC_Os01g01484 (Rice Ensembl Gene)
DH1GeneProduct
  • Retrieved through NCBI (August 25, 2010); Could not find identifier, but found lit reference (see associated bibliography recored)
  • Type your comment here
DI19-2GeneProductLOC_Os05g28980 (Rice Ensembl Gene)
  • Retrieved through Gramene/NCBI
  • HRB1 represents a signaling step that regulates FLOWERING LOCUS T (FT) expression downstream of red and blue light perception.
DPBF3GeneProductLOC_Os01g59760 (Rice Ensembl Gene) Retrieved through Gramene/NCBI
DPNPaseGeneProductLOC_Os12g08280 (Rice Ensembl Gene)
DREB1FGeneProductLOC_Os01g73770 (Rice Ensembl Gene)
DREB1GGeneProductLOC_Os02g45450 (Rice Ensembl Gene)
Dof12GeneProductLOC_Os02g47810 (Rice Ensembl Gene)
EDM2GeneProductLOC_Os08g24946 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
EFSGeneProductLOC_Os02g34850 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
ELF3aGeneProductLOC_Os06g05060 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
ELF3bGeneProduct